RNA–Protein interactions for RNA: YML112W

CTK3, Transcript of Gamma subunit of C-terminal domain kinase I, yeast

Gene CTK3, Length 891 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK3	YML112W	TUB2	P02557	457 aa	Known RBP	4.19	□□□□□ -1.74
CTK3	YML112W	HSF1	P10961	833 aa		4.19	□□□□□ -1.74
CTK3	YML112W	HCM1	P25364	564 aa		4.19	□□□□□ -1.74
CTK3	YML112W	SRP101	P32916	621 aa		4.19	□□□□□ -1.74
CTK3	YML112W	PBY1	P38254	753 aa		4.19	□□□□□ -1.74
CTK3	YML112W	SPF1	P39986	1215 aa	Known RBP	4.19	□□□□□ -1.74
CTK3	YML112W	IRR1	P40541	1150 aa		4.19	□□□□□ -1.74
CTK3	YML112W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
CTK3	YML112W	GYP7	P48365	746 aa		4.19	□□□□□ -1.74
CTK3	YML112W	GSF2	Q04697	403 aa	Known RBP	4.19	□□□□□ -1.74
CTK3	YML112W	TDA5	Q06417	326 aa	Known RBP	4.19	□□□□□ -1.74
CTK3	YML112W	ADE8	P04161	214 aa		4.18	□□□□□ -1.74
CTK3	YML112W	RPP2A	P05319	106 aa	Known RBP	4.18	□□□□□ -1.74
CTK3	YML112W	PPH3	P32345	308 aa		4.18	□□□□□ -1.74
CTK3	YML112W	AAR2	P32357	355 aa	Predicted RBP	4.18	□□□□□ -1.74
CTK3	YML112W	STE5	P32917	917 aa		4.18	□□□□□ -1.74
CTK3	YML112W	PSP2	P50109	593 aa	Known RBP	4.18	□□□□□ -1.74
CTK3	YML112W	SPE1	P08432	466 aa		4.17	□□□□□ -1.74
CTK3	YML112W	GRX1	P25373	110 aa	Known RBP	4.17	□□□□□ -1.74
CTK3	YML112W	RPC82	P32349	654 aa		4.17	□□□□□ -1.74
CTK3	YML112W	TRM2	P33753	639 aa		4.17	□□□□□ -1.74
CTK3	YML112W	YBR184W	P38299	523 aa		4.17	□□□□□ -1.74
CTK3	YML112W	CCC2	P38995	1004 aa		4.17	□□□□□ -1.74
CTK3	YML112W	PHO23	P50947	330 aa		4.17	□□□□□ -1.74
CTK3	YML112W	YPR196W	Q06595	470 aa		4.17	□□□□□ -1.74
CTK3	YML112W	WRS1	Q12109	432 aa	Known RBP	4.17	□□□□□ -1.74
CTK3	YML112W	DCG1	P32460	244 aa		4.16	□□□□□ -1.74
CTK3	YML112W	YKR078W	P36158	585 aa	Known RBP	4.16	□□□□□ -1.74
CTK3	YML112W	YRO2	P38079	344 aa		4.16	□□□□□ -1.74
CTK3	YML112W	TSL1	P38427	1098 aa	Known RBP	4.16	□□□□□ -1.74
CTK3	YML112W	YER158C	P40095	573 aa		4.16	□□□□□ -1.74
CTK3	YML112W	NTO1	Q12311	748 aa		4.16	□□□□□ -1.74
CTK3	YML112W	PMA1	P05030	918 aa	Known RBP	4.15	□□□□□ -1.75
CTK3	YML112W	NPP1	P25353	742 aa		4.15	□□□□□ -1.75
CTK3	YML112W	ATG19	P35193	415 aa		4.15	□□□□□ -1.75
CTK3	YML112W	CDC48	P25694	835 aa	Known RBP	4.14	□□□□□ -1.75
CTK3	YML112W	AFR1	P33304	620 aa		4.14	□□□□□ -1.75
CTK3	YML112W	SIT1	P39980	628 aa		4.14	□□□□□ -1.75
CTK3	YML112W	URM1	P40554	99 aa	Predicted RBP	4.14	□□□□□ -1.75
CTK3	YML112W	IOC3	P43596	787 aa		4.14	□□□□□ -1.75
CTK3	YML112W	YKE2	P52553	114 aa		4.14	□□□□□ -1.75
CTK3	YML112W	TPO2	P53283	614 aa		4.14	□□□□□ -1.75
CTK3	YML112W	WHI4	Q07655	649 aa	Known RBP	4.14	□□□□□ -1.75
CTK3	YML112W	PUS9	Q12069	462 aa		4.14	□□□□□ -1.75
CTK3	YML112W	PNS1	Q12412	539 aa		4.14	□□□□□ -1.75
CTK3	YML112W	KCS1	Q12494	1050 aa		4.14	□□□□□ -1.75
CTK3	YML112W	NOT3	P06102	836 aa	Known RBP	4.13	□□□□□ -1.75
CTK3	YML112W	PRP9	P19736	530 aa	Known RBP	4.13	□□□□□ -1.75
CTK3	YML112W	HBS1	P32769	611 aa	Known RBP	4.13	□□□□□ -1.75
CTK3	YML112W	EXG2	P52911	562 aa		4.13	□□□□□ -1.75
CTK3	YML112W	RAI1	P53063	387 aa	Known RBP	4.13	□□□□□ -1.75
CTK3	YML112W	NCS6	P53088	359 aa		4.13	□□□□□ -1.75
CTK3	YML112W	FMP25	Q08023	583 aa		4.13	□□□□□ -1.75
CTK3	YML112W	SSF2	Q12153	453 aa	Predicted RBP	4.13	□□□□□ -1.75
CTK3	YML112W	PMI40	P29952	429 aa	Known RBP	4.12	□□□□□ -1.75
CTK3	YML112W	YBR238C	P38330	731 aa	Known RBP	4.12	□□□□□ -1.75
CTK3	YML112W	ALR2	P43553	858 aa		4.12	□□□□□ -1.75
CTK3	YML112W	PFD1	P46988	109 aa		4.12	□□□□□ -1.75
CTK3	YML112W	MSE1	P48525	536 aa		4.12	□□□□□ -1.75
CTK3	YML112W	NOP7	P53261	605 aa	Known RBP	4.12	□□□□□ -1.75
CTK3	YML112W	UTP8	P53276	713 aa	Known RBP	4.12	□□□□□ -1.75
CTK3	YML112W	SUN4	P53616	420 aa		4.12	□□□□□ -1.75
CTK3	YML112W	SPO75	Q07798	868 aa		4.12	□□□□□ -1.75
CTK3	YML112W	NPC2	Q12408	173 aa		4.12	□□□□□ -1.75
CTK3	YML112W	PFK1	P16861	987 aa	Known RBP	4.11	□□□□□ -1.75
CTK3	YML112W	RPL8B	P29453	256 aa	Known RBP	4.11	□□□□□ -1.75
CTK3	YML112W	CDC11	P32458	415 aa		4.11	□□□□□ -1.75
CTK3	YML112W	DEF1	P35732	738 aa	Known RBP	4.11	□□□□□ -1.75
CTK3	YML112W	CCM1	P48237	864 aa	Predicted RBP	4.11	□□□□□ -1.75
CTK3	YML112W	LCD1	Q04377	747 aa		4.11	□□□□□ -1.75
CTK3	YML112W	EAF1	Q06337	982 aa		4.11	□□□□□ -1.75
CTK3	YML112W	URN1	Q06525	465 aa	Known RBP	4.11	□□□□□ -1.75
CTK3	YML112W	UPC2	Q12151	913 aa		4.11	□□□□□ -1.75
CTK3	YML112W	YPR071W	Q12346	211 aa		4.11	□□□□□ -1.75
CTK3	YML112W	STE13	P33894	931 aa		4.1	□□□□□ -1.75
CTK3	YML112W	ERT1	P38140	529 aa		4.1	□□□□□ -1.75
CTK3	YML112W	YBR284W	P38150	797 aa		4.1	□□□□□ -1.75
CTK3	YML112W	TOK1	P40310	691 aa		4.1	□□□□□ -1.75
CTK3	YML112W	NAN1	Q02931	896 aa	Known RBP	4.1	□□□□□ -1.75
CTK3	YML112W	BUL2	Q03758	920 aa	Known RBP	4.1	□□□□□ -1.75
CTK3	YML112W	SSL1	Q04673	461 aa	Predicted RBP	4.1	□□□□□ -1.75
CTK3	YML112W	GUP2	Q08929	609 aa		4.1	□□□□□ -1.75
CTK3	YML112W	RFA1	P22336	621 aa	Known RBP	4.09	□□□□□ -1.75
CTK3	YML112W	SED4	P25365	1065 aa		4.09	□□□□□ -1.75
CTK3	YML112W	KAR4	P25583	335 aa		4.09	□□□□□ -1.75
CTK3	YML112W	SCT1	P32784	759 aa		4.09	□□□□□ -1.75
CTK3	YML112W	REC104	P33323	182 aa		4.09	□□□□□ -1.75
CTK3	YML112W	MSS4	P38994	779 aa		4.09	□□□□□ -1.75
CTK3	YML112W	AIM21	P40563	679 aa		4.09	□□□□□ -1.75
CTK3	YML112W	VPS30	Q02948	557 aa		4.09	□□□□□ -1.75
CTK3	YML112W	UBX5	Q06682	500 aa		4.09	□□□□□ -1.75
CTK3	YML112W	AIM39	Q08223	395 aa		4.09	□□□□□ -1.75
CTK3	YML112W	ENB1	Q08299	606 aa		4.09	□□□□□ -1.75
CTK3	YML112W	RAD4	P14736	754 aa		4.08	□□□□□ -1.76
CTK3	YML112W	CAD1	P24813	409 aa	Known RBP	4.08	□□□□□ -1.76
CTK3	YML112W	ARE1	P25628	610 aa		4.08	□□□□□ -1.76
CTK3	YML112W	RPD3	P32561	433 aa		4.08	□□□□□ -1.76
CTK3	YML112W	STE14	P32584	239 aa		4.08	□□□□□ -1.76
CTK3	YML112W	ERP6	P53198	216 aa		4.08	□□□□□ -1.76
CTK3	YML112W	SLI1	P53304	468 aa		4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 26.6 ms