RNA–Protein interactions for RNA: YBR278W

DPB3, Transcript of Third-largest subunit of DNA polymerase II (DNA polymerase epsilon), yeast

Gene DPB3, Length 606 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DPB3	YBR278W	TSL1	P38427	1098 aa	Known RBP	4.16	□□□□□ -1.74
DPB3	YBR278W	PIK1	P39104	1066 aa		4.16	□□□□□ -1.74
DPB3	YBR278W	YER158C	P40095	573 aa		4.16	□□□□□ -1.74
DPB3	YBR278W	UME1	Q03010	460 aa		4.16	□□□□□ -1.74
DPB3	YBR278W	EAR1	Q03212	550 aa		4.16	□□□□□ -1.74
DPB3	YBR278W	THI73	Q07904	523 aa		4.16	□□□□□ -1.74
DPB3	YBR278W	MDM38	Q08179	573 aa		4.16	□□□□□ -1.74
DPB3	YBR278W	EMC3	P36039	253 aa		4.15	□□□□□ -1.75
DPB3	YBR278W	YHL012W	P38709	493 aa		4.15	□□□□□ -1.75
DPB3	YBR278W	GIC1	P38785	314 aa		4.15	□□□□□ -1.75
DPB3	YBR278W	NPP2	P39997	493 aa		4.15	□□□□□ -1.75
DPB3	YBR278W	MGS1	P40151	587 aa		4.15	□□□□□ -1.75
DPB3	YBR278W	GYP7	P48365	746 aa		4.15	□□□□□ -1.75
DPB3	YBR278W	GPG1	P53130	126 aa		4.15	□□□□□ -1.75
DPB3	YBR278W	YGR283C	P53336	341 aa	Predicted RBP	4.15	□□□□□ -1.75
DPB3	YBR278W	RCL1	Q08096	367 aa	Predicted RBP	4.15	□□□□□ -1.75
DPB3	YBR278W	YOL057W	Q08225	711 aa		4.15	□□□□□ -1.75
DPB3	YBR278W	MED7	Q08278	222 aa		4.15	□□□□□ -1.75
DPB3	YBR278W	ENV7	Q12003	364 aa		4.15	□□□□□ -1.75
DPB3	YBR278W	TOP1	P04786	769 aa		4.14	□□□□□ -1.75
DPB3	YBR278W	RAD18	P10862	487 aa		4.14	□□□□□ -1.75
DPB3	YBR278W	SAM35	P14693	329 aa		4.14	□□□□□ -1.75
DPB3	YBR278W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
DPB3	YBR278W	MTC2	P34246	357 aa		4.14	□□□□□ -1.75
DPB3	YBR278W	YBR238C	P38330	731 aa	Known RBP	4.14	□□□□□ -1.75
DPB3	YBR278W	ENP1	P38333	483 aa	Known RBP	4.14	□□□□□ -1.75
DPB3	YBR278W	IRC24	P40580	263 aa		4.14	□□□□□ -1.75
DPB3	YBR278W	ATP25	Q03153	612 aa		4.14	□□□□□ -1.75
DPB3	YBR278W	TMA17	Q12513	150 aa		4.14	□□□□□ -1.75
DPB3	YBR278W	CHS2	P14180	963 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	SRO9	P25567	434 aa	Known RBP	4.13	□□□□□ -1.75
DPB3	YBR278W	PCL2	P25693	308 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	CDC48	P25694	835 aa	Known RBP	4.13	□□□□□ -1.75
DPB3	YBR278W	FUN30	P31380	1131 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	LIP5	P32875	414 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	YEL1	P34225	687 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	WHI3	P34761	661 aa	Known RBP	4.13	□□□□□ -1.75
DPB3	YBR278W	GRX7	P38068	203 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	RRT14	P40470	206 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	TY4A-J	P47023	414 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	NIT3	P49954	291 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	DAM1	P53267	343 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	FOL1	P53848	824 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	SRT1	Q03175	343 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	RSC3	Q06639	885 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	MET7	Q08645	548 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	FAP7	Q12055	197 aa	Predicted RBP	4.13	□□□□□ -1.75
DPB3	YBR278W	YVC1	Q12324	675 aa		4.13	□□□□□ -1.75
DPB3	YBR278W	MPH2	P0CD99	609 aa		4.12	□□□□□ -1.75
DPB3	YBR278W	ACE2	P21192	770 aa		4.12	□□□□□ -1.75
DPB3	YBR278W	STO1	P34160	861 aa	Known RBP	4.12	□□□□□ -1.75
DPB3	YBR278W	SAF1	P38352	637 aa		4.12	□□□□□ -1.75
DPB3	YBR278W	AKR1	P39010	764 aa		4.12	□□□□□ -1.75
DPB3	YBR278W	NUG1	P40010	520 aa	Known RBP	4.12	□□□□□ -1.75
DPB3	YBR278W	TPM2	P40414	161 aa		4.12	□□□□□ -1.75
DPB3	YBR278W	MMM1	P41800	426 aa		4.12	□□□□□ -1.75
DPB3	YBR278W	YJR120W	P47157	116 aa		4.12	□□□□□ -1.75
DPB3	YBR278W	YKE2	P52553	114 aa		4.12	□□□□□ -1.75
DPB3	YBR278W	MTC3	P53077	123 aa		4.12	□□□□□ -1.75
DPB3	YBR278W	YLR122C	Q12312	125 aa		4.12	□□□□□ -1.75
DPB3	YBR278W	TRP3	P00937	484 aa		4.11	□□□□□ -1.75
DPB3	YBR278W	SFL1	P20134	766 aa		4.11	□□□□□ -1.75
DPB3	YBR278W	MDL2	P33311	773 aa		4.11	□□□□□ -1.75
DPB3	YBR278W	TYS1	P36421	394 aa	Known RBP	4.11	□□□□□ -1.75
DPB3	YBR278W	CIT3	P43635	486 aa		4.11	□□□□□ -1.75
DPB3	YBR278W	AVT1	P47082	602 aa		4.11	□□□□□ -1.75
DPB3	YBR278W	MET13	P53128	600 aa		4.11	□□□□□ -1.75
DPB3	YBR278W	SFB2	P53953	876 aa		4.11	□□□□□ -1.75
DPB3	YBR278W	SDH1	Q00711	640 aa		4.11	□□□□□ -1.75
DPB3	YBR278W	REH1	Q06709	432 aa		4.11	□□□□□ -1.75
DPB3	YBR278W	NBA1	Q08229	501 aa	Known RBP	4.11	□□□□□ -1.75
DPB3	YBR278W	PER1	P25625	357 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	RPC82	P32349	654 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	HOG1	P32485	435 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	MCD4	P36051	919 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	YKR073C	P36153	106 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	TOS1	P38288	455 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	NOP2	P40991	618 aa	Known RBP	4.1	□□□□□ -1.75
DPB3	YBR278W	GPP1	P41277	250 aa	Known RBP	4.1	□□□□□ -1.75
DPB3	YBR278W	CAF16	P43569	289 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	HFM1	P51979	1187 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	PEX8	P53248	589 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	YGR130C	P53278	816 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	SNP1	Q00916	300 aa	Predicted RBP	4.1	□□□□□ -1.75
DPB3	YBR278W	MTQ2	Q03920	221 aa	Predicted RBP	4.1	□□□□□ -1.75
DPB3	YBR278W	YDR514C	Q04408	483 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	COG8	Q04632	607 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	YPR196W	Q06595	470 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	not detected
DPB3	YBR278W	RSC58	Q07979	502 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	RSB1	Q08417	382 aa		4.1	□□□□□ -1.75
DPB3	YBR278W	YOR059C	Q08448	450 aa	Known RBP	4.1	□□□□□ -1.75
DPB3	YBR278W	HMG1	P12683	1054 aa		4.09	□□□□□ -1.75
DPB3	YBR278W	NAM7	P30771	971 aa	Known RBP	4.09	□□□□□ -1.75
DPB3	YBR278W	PCM1	P38628	557 aa	Known RBP	4.09	□□□□□ -1.75
DPB3	YBR278W	NIT1	P40447	199 aa		4.09	□□□□□ -1.75
DPB3	YBR278W	OYE3	P41816	400 aa	Predicted RBP	4.09	□□□□□ -1.75
DPB3	YBR278W	HFD1	Q04458	532 aa		4.09	□□□□□ -1.75
DPB3	YBR278W	XYL2	Q07993	356 aa		4.09	□□□□□ -1.75
DPB3	YBR278W	SVS1	Q12254	260 aa		4.09	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 95.6 ms