RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 CWC27Q6UX04 472 aaKnown RBP10.41□□□□□ -0.74
VCL-207ENST00000624354 PTPRUQ92729 1446 aa10.41□□□□□ -0.74
VCL-207ENST00000624354 F13A1P00488 732 aa10.4□□□□□ -0.74
VCL-207ENST00000624354 HOXC9P31274 260 aa10.4□□□□□ -0.74
VCL-207ENST00000624354 RASEFQ8IZ41 740 aa10.4□□□□□ -0.74
VCL-207ENST00000624354 CHMP4AQ9BY43 222 aa10.4□□□□□ -0.74
VCL-207ENST00000624354 RIMS1Q86UR5 1692 aaKnown RBP10.4□□□□□ -0.74
VCL-207ENST00000624354 FIBPO43427 364 aa10.4□□□□□ -0.74
VCL-207ENST00000624354 ADCY5O95622 1261 aa10.4□□□□□ -0.74
VCL-207ENST00000624354 HCLS1P14317 486 aaPredicted RBP10.4□□□□□ -0.74
VCL-207ENST00000624354 EIF2S2P20042 333 aaKnown RBP10.4□□□□□ -0.74
VCL-207ENST00000624354 RUFY3Q7L099 469 aa10.4□□□□□ -0.74
VCL-207ENST00000624354 IPO4Q8TEX9 1081 aaKnown RBP10.4□□□□□ -0.74
VCL-207ENST00000624354 RUFY2Q8WXA3 655 aa10.4□□□□□ -0.74
VCL-207ENST00000624354 GLRX3O76003 335 aaKnown RBP10.4□□□□□ -0.75
VCL-207ENST00000624354 OS9Q13438 667 aaPredicted RBP10.4□□□□□ -0.75
VCL-207ENST00000624354 PIBF1Q8WXW3 757 aa10.4□□□□□ -0.75
VCL-207ENST00000624354 LTV1Q96GA3 475 aaPredicted RBP10.4□□□□□ -0.75
VCL-207ENST00000624354 LARP6Q9BRS8 491 aaKnown RBP10.4□□□□□ -0.75
VCL-207ENST00000624354 DIAPH3Q9NSV4 1193 aa10.4□□□□□ -0.75
VCL-207ENST00000624354 SPG7Q9UQ90 795 aa10.4□□□□□ -0.75
VCL-207ENST00000624354 KIF3AQ9Y496 699 aa10.4□□□□□ -0.75
VCL-207ENST00000624354 XRN1Q8IZH2 1706 aaKnown RBP10.39□□□□□ -0.75
VCL-207ENST00000624354 NBPF7P0C2Y1 421 aaPredicted RBP10.39□□□□□ -0.75
VCL-207ENST00000624354 CASTP20810 708 aaKnown RBP10.39□□□□□ -0.75
VCL-207ENST00000624354 ANKLE2Q86XL3 938 aa10.39□□□□□ -0.75
VCL-207ENST00000624354 TUBGCP6Q96RT7 1819 aa10.39□□□□□ -0.75
VCL-207ENST00000624354 FAM208AQ9UK61 1670 aaKnown RBP10.39□□□□□ -0.75
VCL-207ENST00000624354 GTF2F1P35269 517 aaKnown RBP eCLIP10.39□□□□□ -0.758e-7■■■■■ 61.7
VCL-207ENST00000624354 KLHL34Q8N239 644 aa10.39□□□□□ -0.75
VCL-207ENST00000624354 TTC41PQ6P2S7 1318 aa10.39□□□□□ -0.75
VCL-207ENST00000624354 SPDYE4A6NLX3 237 aa10.38□□□□□ -0.75
VCL-207ENST00000624354 DNAAF4Q8WXU2 420 aa10.38□□□□□ -0.75
VCL-207ENST00000624354 NOLC1Q14978 699 aaKnown RBP eCLIP10.38□□□□□ -0.75
VCL-207ENST00000624354 CLASRPQ8N2M8 674 aaKnown RBP10.38□□□□□ -0.75
VCL-207ENST00000624354 PDCL2Q8N4E4 241 aa10.38□□□□□ -0.75
VCL-207ENST00000624354 ZSCAN31Q96LW9 406 aaPredicted RBP10.38□□□□□ -0.75
VCL-207ENST00000624354 ZNF830Q96NB3 372 aaPredicted RBP10.38□□□□□ -0.75
VCL-207ENST00000624354 LRRC37A3O60309 1634 aa10.38□□□□□ -0.75
VCL-207ENST00000624354 PI4KAP2A4QPH2 592 aa10.38□□□□□ -0.75
VCL-207ENST00000624354 KDM4AO75164 1064 aa10.38□□□□□ -0.75
VCL-207ENST00000624354 GJB2P29033 226 aa10.38□□□□□ -0.75
VCL-207ENST00000624354 PLCB2Q00722 1185 aa10.38□□□□□ -0.75
VCL-207ENST00000624354 CCDC83Q8IWF9 413 aa10.38□□□□□ -0.75
VCL-207ENST00000624354 PI4KAP1Q8N8J0 262 aa10.38□□□□□ -0.75
VCL-207ENST00000624354 SH2B1Q9NRF2 756 aaPredicted RBP10.38□□□□□ -0.75
VCL-207ENST00000624354 PDRG1Q9NUG6 133 aa10.38□□□□□ -0.75
VCL-207ENST00000624354 CDK11BP21127 795 aaKnown RBP10.37□□□□□ -0.75
VCL-207ENST00000624354 BEND3Q5T5X7 828 aa10.37□□□□□ -0.75
VCL-207ENST00000624354 VPS53Q5VIR6 699 aa10.37□□□□□ -0.75
VCL-207ENST00000624354 JAKMIP1Q96N16 626 aaKnown RBP10.37□□□□□ -0.75
VCL-207ENST00000624354 TTC12Q9H892 705 aaPredicted RBP10.37□□□□□ -0.75
VCL-207ENST00000624354 HYPKQ9NX55 129 aa10.37□□□□□ -0.75
VCL-207ENST00000624354 FMN2Q9NZ56 1722 aa10.37□□□□□ -0.75
VCL-207ENST00000624354 HOXB7P09629 217 aa10.37□□□□□ -0.75
VCL-207ENST00000624354 CPA1P15085 419 aa10.37□□□□□ -0.75
VCL-207ENST00000624354 ZNF771Q7L3S4 317 aaPredicted RBP10.37□□□□□ -0.75
VCL-207ENST00000624354 GPATCH3Q96I76 525 aa10.37□□□□□ -0.75
VCL-207ENST00000624354 CGNQ9P2M7 1197 aaKnown RBP10.37□□□□□ -0.75
VCL-207ENST00000624354 CYP46A1Q9Y6A2 500 aa10.37□□□□□ -0.75
VCL-207ENST00000624354 USP42Q9H9J4 1324 aaKnown RBP10.37□□□□□ -0.75
VCL-207ENST00000624354 FAM177BA6PVY3 158 aa10.36□□□□□ -0.75
VCL-207ENST00000624354 DNM1Q05193 864 aaKnown RBP10.36□□□□□ -0.75
VCL-207ENST00000624354 GIMAP6Q6P9H5 292 aa10.36□□□□□ -0.75
VCL-207ENST00000624354 CHPF2Q9P2E5 772 aa10.36□□□□□ -0.75
VCL-207ENST00000624354 LARGE1O95461 756 aa10.36□□□□□ -0.75
VCL-207ENST00000624354 ZKSCAN1P17029 563 aaPredicted RBP10.36□□□□□ -0.75
VCL-207ENST00000624354 EIF4A1P60842 406 aaKnown RBP10.36□□□□□ -0.75
VCL-207ENST00000624354 TM6SF1Q9BZW5 370 aa10.36□□□□□ -0.75
VCL-207ENST00000624354 BCL2L12Q9HB09 334 aa10.36□□□□□ -0.75
VCL-207ENST00000624354 ECHDC1Q9NTX5 307 aa10.36□□□□□ -0.75
VCL-207ENST00000624354 MTMR6Q9Y217 621 aa10.36□□□□□ -0.75
VCL-207ENST00000624354 IGSF3O75054 1194 aa10.36□□□□□ -0.75
VCL-207ENST00000624354 PRPF40BQ6NWY9 871 aaKnown RBP10.36□□□□□ -0.75
VCL-207ENST00000624354 AEBP2Q6ZN18 517 aaPredicted RBP10.36□□□□□ -0.75
VCL-207ENST00000624354 ABTB2Q8N961 1025 aa10.36□□□□□ -0.75
VCL-207ENST00000624354 UBR1Q8IWV7 1749 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 VPS37CA5D8V6 355 aaPredicted RBP10.35□□□□□ -0.75
VCL-207ENST00000624354 VGLL3A8MV65 326 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 IFIT2P09913 472 aaKnown RBP10.35□□□□□ -0.75
VCL-207ENST00000624354 PROSER2Q86WR7 435 aaPredicted RBP10.35□□□□□ -0.75
VCL-207ENST00000624354 USHBP1Q8N6Y0 703 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 FUCA2Q9BTY2 467 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 ZSWIM6Q9HCJ5 1215 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 TBX22Q9Y458 520 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 PTH1RQ03431 593 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 ADCK5Q3MIX3 580 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 TPM3P06753 285 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 KCNJ4P48050 445 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 ERC1Q8IUD2 1116 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 HDAC5Q9UQL6 1122 aa10.35□□□□□ -0.75
VCL-207ENST00000624354 CEMIPQ8WUJ3 1361 aa10.34□□□□□ -0.75
VCL-207ENST00000624354 CACNA1FO60840 1977 aa10.34□□□□□ -0.75
VCL-207ENST00000624354 CCDC192P0DO97 292 aa10.34□□□□□ -0.75
VCL-207ENST00000624354 MTX1Q13505 466 aa10.34□□□□□ -0.75
VCL-207ENST00000624354 EVI5LQ96CN4 794 aa10.34□□□□□ -0.75
VCL-207ENST00000624354 C9orf78Q9NZ63 289 aaPredicted RBP10.34□□□□□ -0.75
VCL-207ENST00000624354 TEFQ10587 303 aa10.34□□□□□ -0.75
VCL-207ENST00000624354 ESCO1Q5FWF5 840 aa10.34□□□□□ -0.75
VCL-207ENST00000624354 SPTLC3Q9NUV7 552 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 209.4 ms