RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 EPB41L2O43491 1005 aaKnown RBP14.2□□□□□ -0.14
TPM3-223ENST00000611659 TPD52L1Q16890 204 aaPredicted RBP14.2□□□□□ -0.14
TPM3-223ENST00000611659 ME3Q16798 604 aa14.2□□□□□ -0.14
TPM3-223ENST00000611659 CDC37L1Q7L3B6 337 aa14.2□□□□□ -0.14
TPM3-223ENST00000611659 CBX8Q9HC52 389 aa14.2□□□□□ -0.14
TPM3-223ENST00000611659 CCDC112Q8NEF3 446 aa14.19□□□□□ -0.14
TPM3-223ENST00000611659 SSH3Q8TE77 659 aa14.19□□□□□ -0.14
TPM3-223ENST00000611659 FEZ1Q99689 392 aa14.19□□□□□ -0.14
TPM3-223ENST00000611659 PHAXQ9H814 394 aaKnown RBP14.19□□□□□ -0.14
TPM3-223ENST00000611659 DIP2CQ9Y2E4 1556 aa14.19□□□□□ -0.14
TPM3-223ENST00000611659 RAB11FIP3O75154 756 aa14.19□□□□□ -0.14
TPM3-223ENST00000611659 KIF1BPQ96EK5 621 aa14.19□□□□□ -0.14
TPM3-223ENST00000611659 TCEANC2Q96MN5 208 aa14.19□□□□□ -0.14
TPM3-223ENST00000611659 OGFRQ9NZT2 677 aa14.19□□□□□ -0.14
TPM3-223ENST00000611659 TTC21BQ7Z4L5 1316 aa14.19□□□□□ -0.14
TPM3-223ENST00000611659 SMTNL1A8MU46 457 aa14.18□□□□□ -0.14
TPM3-223ENST00000611659 VPS53Q5VIR6 699 aa14.18□□□□□ -0.14
TPM3-223ENST00000611659 PRR36Q9H6K5 1346 aa14.18□□□□□ -0.14
TPM3-223ENST00000611659 EIF2S2P20042 333 aaKnown RBP14.18□□□□□ -0.14
TPM3-223ENST00000611659 ZSCAN25Q6NSZ9 544 aa14.18□□□□□ -0.14
TPM3-223ENST00000611659 ZSCAN31Q96LW9 406 aaPredicted RBP14.18□□□□□ -0.14
TPM3-223ENST00000611659 ESF1Q9H501 851 aaKnown RBP14.18□□□□□ -0.14
TPM3-223ENST00000611659 SH2B1Q9NRF2 756 aaPredicted RBP14.18□□□□□ -0.14
TPM3-223ENST00000611659 CGNQ9P2M7 1197 aaKnown RBP14.18□□□□□ -0.14
TPM3-223ENST00000611659 RUFY2Q8WXA3 655 aa14.17□□□□□ -0.14
TPM3-223ENST00000611659 SPATA32Q96LK8 384 aa14.17□□□□□ -0.14
TPM3-223ENST00000611659 CLIP2Q9UDT6 1046 aa14.17□□□□□ -0.14
TPM3-223ENST00000611659 NBPF7P0C2Y1 421 aaPredicted RBP14.17□□□□□ -0.14
TPM3-223ENST00000611659 ZKSCAN1P17029 563 aaPredicted RBP14.17□□□□□ -0.14
TPM3-223ENST00000611659 ST3GAL1Q11201 340 aa14.17□□□□□ -0.14
TPM3-223ENST00000611659 BICD2Q8TD16 824 aa14.17□□□□□ -0.14
TPM3-223ENST00000611659 DNAJC25Q9H1X3 360 aa14.17□□□□□ -0.14
TPM3-223ENST00000611659 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.17□□□□□ -0.14
TPM3-223ENST00000611659 V9GYY5 206 aaPredicted RBP14.17□□□□□ -0.14
TPM3-223ENST00000611659 METP08581 1390 aa14.17□□□□□ -0.14
TPM3-223ENST00000611659 ZNF75DP51815 510 aa14.17□□□□□ -0.14
TPM3-223ENST00000611659 HDGFL1Q5TGJ6 251 aa14.17□□□□□ -0.14
TPM3-223ENST00000611659 TPCN1Q9ULQ1 816 aa14.17□□□□□ -0.14
TPM3-223ENST00000611659 ACEP12821 1306 aa14.17□□□□□ -0.14
TPM3-223ENST00000611659 DLC1Q96QB1 1528 aa14.16□□□□□ -0.14
TPM3-223ENST00000611659 PREX1Q8TCU6 1659 aa14.16□□□□□ -0.14
TPM3-223ENST00000611659 ZNF165P49910 485 aa14.16□□□□□ -0.14
TPM3-223ENST00000611659 STK3Q13188 491 aa14.16□□□□□ -0.14
TPM3-223ENST00000611659 CTNNA3Q9UI47 895 aa14.16□□□□□ -0.14
TPM3-223ENST00000611659 AMPHP49418 695 aa14.16□□□□□ -0.14
TPM3-223ENST00000611659 CACTINQ8WUQ7 758 aaKnown RBP14.15□□□□□ -0.14
TPM3-223ENST00000611659 ZSWIM6Q9HCJ5 1215 aa14.15□□□□□ -0.14
TPM3-223ENST00000611659 ARHGEF10O15013 1369 aa14.15□□□□□ -0.14
TPM3-223ENST00000611659 GLRX3O76003 335 aaKnown RBP14.15□□□□□ -0.14
TPM3-223ENST00000611659 COL9A3Q14050 684 aaPredicted RBP14.15□□□□□ -0.14
TPM3-223ENST00000611659 EYA1Q99502 592 aa14.15□□□□□ -0.14
TPM3-223ENST00000611659 PAXBP1Q9Y5B6 917 aa14.15□□□□□ -0.14
TPM3-223ENST00000611659 NEO1Q92859 1461 aa14.14□□□□□ -0.15
TPM3-223ENST00000611659 NR1I2O75469 434 aa14.14□□□□□ -0.15
TPM3-223ENST00000611659 CEP135Q66GS9 1140 aa14.14□□□□□ -0.15
TPM3-223ENST00000611659 CCDC144BQ3MJ40 725 aa14.14□□□□□ -0.15
TPM3-223ENST00000611659 CCDC144CPQ8IYA2 1237 aa14.14□□□□□ -0.15
TPM3-223ENST00000611659 CLASRPQ8N2M8 674 aaKnown RBP14.14□□□□□ -0.15
TPM3-223ENST00000611659 RBM8AQ9Y5S9 174 aaKnown RBP14.14□□□□□ -0.15
TPM3-223ENST00000611659 TUBGCP6Q96RT7 1819 aa14.14□□□□□ -0.15
TPM3-223ENST00000611659 GNAT3A8MTJ3 354 aa14.13□□□□□ -0.15
TPM3-223ENST00000611659 POLA2Q14181 598 aa14.13□□□□□ -0.15
TPM3-223ENST00000611659 SCAND2PQ9GZW5 306 aaPredicted RBP14.13□□□□□ -0.15
TPM3-223ENST00000611659 GOLGA6L19H0YKK7 550 aa14.13□□□□□ -0.15
TPM3-223ENST00000611659 NPHP1O15259 732 aa14.13□□□□□ -0.15
TPM3-223ENST00000611659 PDCP20941 246 aa14.13□□□□□ -0.15
TPM3-223ENST00000611659 ARID5BQ14865 1188 aa14.13□□□□□ -0.15
TPM3-223ENST00000611659 TAF7Q15545 349 aaPredicted RBP14.13□□□□□ -0.15
TPM3-223ENST00000611659 NUTM2GQ5VZR2 741 aa14.13□□□□□ -0.15
TPM3-223ENST00000611659 LARP1Q6PKG0 1096 aaKnown RBP14.13□□□□□ -0.15
TPM3-223ENST00000611659 PLA2G4DQ86XP0 818 aa14.13□□□□□ -0.15
TPM3-223ENST00000611659 PPP6R1Q9UPN7 881 aa14.13□□□□□ -0.15
TPM3-223ENST00000611659 IFIT2P09913 472 aaKnown RBP14.13□□□□□ -0.15
TPM3-223ENST00000611659 CEBPZQ03701 1054 aaKnown RBP14.13□□□□□ -0.15
TPM3-223ENST00000611659 CREB3L3Q68CJ9 461 aa14.13□□□□□ -0.15
TPM3-223ENST00000611659 LTV1Q96GA3 475 aaPredicted RBP14.13□□□□□ -0.15
TPM3-223ENST00000611659 SLC26A8Q96RN1 970 aa14.13□□□□□ -0.15
TPM3-223ENST00000611659 DDX19AQ9NUU7 478 aaKnown RBP14.13□□□□□ -0.15
TPM3-223ENST00000611659 TRMT1Q9NXH9 659 aaKnown RBP14.13□□□□□ -0.15
TPM3-223ENST00000611659 DDX41Q9UJV9 622 aaKnown RBP14.13□□□□□ -0.15
TPM3-223ENST00000611659 LEO1Q8WVC0 666 aaPredicted RBP14.12□□□□□ -0.15
TPM3-223ENST00000611659 FAM227BQ96M60 508 aa14.12□□□□□ -0.15
TPM3-223ENST00000611659 USP27XA6NNY8 438 aa14.12□□□□□ -0.15
TPM3-223ENST00000611659 ANXA1P04083 346 aa14.12□□□□□ -0.15
TPM3-223ENST00000611659 FILIP1Q7Z7B0 1213 aa14.12□□□□□ -0.15
TPM3-223ENST00000611659 CCDC171Q6TFL3 1326 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 NPHP3Q7Z494 1330 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 TM6SF1Q9BZW5 370 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 CLSTN2Q9H4D0 955 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 ELP1O95163 1332 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 RIMS1Q86UR5 1692 aaKnown RBP14.11□□□□□ -0.15
TPM3-223ENST00000611659 NECTIN1Q15223 517 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 HSP90AB4PQ58FF6 505 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 BLOC1S2Q6QNY1 142 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 KLHL34Q8N239 644 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 TDRD7Q8NHU6 1098 aaKnown RBP14.11□□□□□ -0.15
TPM3-223ENST00000611659 KIF18AQ8NI77 898 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 DDX11Q96FC9 970 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 ECHDC1Q9NTX5 307 aa14.11□□□□□ -0.15
TPM3-223ENST00000611659 ZNF215Q9UL58 517 aaPredicted RBP14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms