RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 CHAF1AQ13111 956 aaPredicted RBP21.98■■□□□ 1.11
UPF1-210ENST00000600689 PTGS1P23219 599 aa21.97■■□□□ 1.11
UPF1-210ENST00000600689 UBE2HP62256 183 aa21.97■■□□□ 1.11
UPF1-210ENST00000600689 TCEANC2Q96MN5 208 aa21.97■■□□□ 1.11
UPF1-210ENST00000600689 PHF8Q9UPP1 1060 aa21.97■■□□□ 1.11
UPF1-210ENST00000600689 ANKARQ7Z5J8 1434 aa21.97■■□□□ 1.11
UPF1-210ENST00000600689 TCHHQ07283 1943 aa21.96■■□□□ 1.11
UPF1-210ENST00000600689 F13A1P00488 732 aa21.96■■□□□ 1.11
UPF1-210ENST00000600689 GJB2P29033 226 aa21.96■■□□□ 1.11
UPF1-210ENST00000600689 ANAPC15P60006 121 aa21.96■■□□□ 1.11
UPF1-210ENST00000600689 MARF1Q9Y4F3 1742 aaKnown RBP21.96■■□□□ 1.11
UPF1-210ENST00000600689 UBTFL1P0CB47 393 aaPredicted RBP21.95■■□□□ 1.11
UPF1-210ENST00000600689 EIF2S2P20042 333 aaKnown RBP21.95■■□□□ 1.11
UPF1-210ENST00000600689 HSPA4P34932 840 aa21.95■■□□□ 1.11
UPF1-210ENST00000600689 ATP8B2P98198 1209 aa21.95■■□□□ 1.11
UPF1-210ENST00000600689 UVSSAQ2YD98 709 aa21.95■■□□□ 1.11
UPF1-210ENST00000600689 C16orf45Q96MC5 204 aaPredicted RBP21.95■■□□□ 1.11
UPF1-210ENST00000600689 LRMPQ12912 555 aa21.95■■□□□ 1.1
UPF1-210ENST00000600689 OS9Q13438 667 aaPredicted RBP21.95■■□□□ 1.1
UPF1-210ENST00000600689 NAA30Q147X3 362 aaPredicted RBP21.95■■□□□ 1.1
UPF1-210ENST00000600689 LUZP1Q86V48 1076 aa21.95■■□□□ 1.1
UPF1-210ENST00000600689 SETD1BQ9UPS6 1966 aaKnown RBP21.95■■□□□ 1.1
UPF1-210ENST00000600689 DMTNQ08495 405 aa21.95■■□□□ 1.1
UPF1-210ENST00000600689 KIAA0232Q92628 1395 aa21.95■■□□□ 1.1
UPF1-210ENST00000600689 ESCO1Q5FWF5 840 aa21.94■■□□□ 1.1
UPF1-210ENST00000600689 SALL3Q9BXA9 1300 aa21.94■■□□□ 1.1
UPF1-210ENST00000600689 GNAI3P08754 354 aa21.94■■□□□ 1.1
UPF1-210ENST00000600689 ZNF592Q92610 1267 aa21.94■■□□□ 1.1
UPF1-210ENST00000600689 JAKMIP1Q96N16 626 aaKnown RBP21.94■■□□□ 1.1
UPF1-210ENST00000600689 PRPF40BQ6NWY9 871 aaKnown RBP21.93■■□□□ 1.1
UPF1-210ENST00000600689 PPP1R42Q7Z4L9 355 aa21.93■■□□□ 1.1
UPF1-210ENST00000600689 TFIP11Q9UBB9 837 aaKnown RBP21.93■■□□□ 1.1
UPF1-210ENST00000600689 LIMCH1Q9UPQ0 1083 aa21.93■■□□□ 1.1
UPF1-210ENST00000600689 ADCK5Q3MIX3 580 aa21.93■■□□□ 1.1
UPF1-210ENST00000600689 PHAXQ9H814 394 aaKnown RBP21.93■■□□□ 1.1
UPF1-210ENST00000600689 NRBP1Q9UHY1 535 aa21.92■■□□□ 1.1
UPF1-210ENST00000600689 SRGAP3O43295 1099 aa21.92■■□□□ 1.1
UPF1-210ENST00000600689 KCNJ4P48050 445 aa21.92■■□□□ 1.1
UPF1-210ENST00000600689 ANXA1P04083 346 aa21.91■■□□□ 1.1
UPF1-210ENST00000600689 KIAA1524Q8TCG1 905 aa21.91■■□□□ 1.1
UPF1-210ENST00000600689 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.91■■□□□ 1.1
UPF1-210ENST00000600689 CHD2O14647 1828 aaKnown RBP21.91■■□□□ 1.1
UPF1-210ENST00000600689 CCDC186Q7Z3E2 898 aa21.91■■□□□ 1.1
UPF1-210ENST00000600689 COL9A3Q14050 684 aaPredicted RBP21.9■■□□□ 1.1
UPF1-210ENST00000600689 USP44Q9H0E7 712 aa21.9■■□□□ 1.1
UPF1-210ENST00000600689 NWD1Q149M9 1564 aa21.9■■□□□ 1.1
UPF1-210ENST00000600689 GNAT3A8MTJ3 354 aa21.9■■□□□ 1.1
UPF1-210ENST00000600689 PSME1Q06323 249 aa21.9■■□□□ 1.1
UPF1-210ENST00000600689 IL17REQ8NFR9 667 aa21.9■■□□□ 1.1
UPF1-210ENST00000600689 SGSM2O43147 1006 aa21.89■■□□□ 1.09
UPF1-210ENST00000600689 LIG1P18858 919 aa21.89■■□□□ 1.09
UPF1-210ENST00000600689 PTH1RQ03431 593 aa21.89■■□□□ 1.09
UPF1-210ENST00000600689 STK3Q13188 491 aa21.89■■□□□ 1.09
UPF1-210ENST00000600689 RHPN1Q8TCX5 695 aa21.88■■□□□ 1.09
UPF1-210ENST00000600689 DIAPH3Q9NSV4 1193 aa21.88■■□□□ 1.09
UPF1-210ENST00000600689 PDRG1Q9NUG6 133 aa21.88■■□□□ 1.09
UPF1-210ENST00000600689 ORAI2Q96SN7 254 aa21.88■■□□□ 1.09
UPF1-210ENST00000600689 RAD50Q92878 1312 aa21.88■■□□□ 1.09
UPF1-210ENST00000600689 SPTLC3Q9NUV7 552 aa21.88■■□□□ 1.09
UPF1-210ENST00000600689 MTMR6Q9Y217 621 aa21.88■■□□□ 1.09
UPF1-210ENST00000600689 GOLGA6L4A6NEF3 574 aa21.87■■□□□ 1.09
UPF1-210ENST00000600689 LETM1O95202 739 aaPredicted RBP21.87■■□□□ 1.09
UPF1-210ENST00000600689 CCDC192P0DO97 292 aa21.87■■□□□ 1.09
UPF1-210ENST00000600689 FOSBP53539 338 aa21.87■■□□□ 1.09
UPF1-210ENST00000600689 TRIM5Q9C035 493 aa21.87■■□□□ 1.09
UPF1-210ENST00000600689 CCDC30Q5VVM6 783 aa21.87■■□□□ 1.09
UPF1-210ENST00000600689 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.87■■□□□ 1.09
UPF1-210ENST00000600689 ATP6V1DQ9Y5K8 247 aa21.87■■□□□ 1.09
UPF1-210ENST00000600689 V9GYY5 206 aaPredicted RBP21.87■■□□□ 1.09
UPF1-210ENST00000600689 FBXW7Q969H0 707 aa21.86■■□□□ 1.09
UPF1-210ENST00000600689 TTC14Q96N46 770 aa21.86■■□□□ 1.09
UPF1-210ENST00000600689 LSG1Q9H089 658 aaKnown RBP21.86■■□□□ 1.09
UPF1-210ENST00000600689 NBPF7P0C2Y1 421 aaPredicted RBP21.86■■□□□ 1.09
UPF1-210ENST00000600689 SOS1Q07889 1333 aaPredicted RBP21.86■■□□□ 1.09
UPF1-210ENST00000600689 NBPF6Q5VWK0 638 aa21.86■■□□□ 1.09
UPF1-210ENST00000600689 LARP1BQ659C4 914 aaKnown RBP21.86■■□□□ 1.09
UPF1-210ENST00000600689 CNTROBQ8N137 903 aa21.86■■□□□ 1.09
UPF1-210ENST00000600689 NBPF4Q96M43 638 aa21.86■■□□□ 1.09
UPF1-210ENST00000600689 STAP2Q9UGK3 403 aa21.86■■□□□ 1.09
UPF1-210ENST00000600689 TTC6Q86TZ1 520 aa21.85■■□□□ 1.09
UPF1-210ENST00000600689 GOLGA6L6A8MZA4 724 aa21.85■■□□□ 1.09
UPF1-210ENST00000600689 FUCA2Q9BTY2 467 aa21.85■■□□□ 1.09
UPF1-210ENST00000600689 NPHP1O15259 732 aa21.84■■□□□ 1.09
UPF1-210ENST00000600689 CEBPZQ03701 1054 aaKnown RBP21.84■■□□□ 1.09
UPF1-210ENST00000600689 LMOD2Q6P5Q4 547 aa21.84■■□□□ 1.09
UPF1-210ENST00000600689 CDC37L1Q7L3B6 337 aa21.84■■□□□ 1.09
UPF1-210ENST00000600689 ZNF771Q7L3S4 317 aaPredicted RBP21.84■■□□□ 1.09
UPF1-210ENST00000600689 TMEM87AQ8NBN3 555 aa21.84■■□□□ 1.09
UPF1-210ENST00000600689 PI4K2BQ8TCG2 481 aa21.84■■□□□ 1.09
UPF1-210ENST00000600689 LTN1O94822 1766 aa21.84■■□□□ 1.09
UPF1-210ENST00000600689 GTF2F1P35269 517 aaKnown RBP eCLIP21.84■■□□□ 1.09
UPF1-210ENST00000600689 ANO6Q4KMQ2 910 aa21.84■■□□□ 1.09
UPF1-210ENST00000600689 LRRC59Q96AG4 307 aaKnown RBP21.84■■□□□ 1.09
UPF1-210ENST00000600689 NUP62CLQ9H1M0 184 aa21.84■■□□□ 1.09
UPF1-210ENST00000600689 DACT1Q9NYF0 836 aa21.84■■□□□ 1.09
UPF1-210ENST00000600689 ME3Q16798 604 aa21.83■■□□□ 1.09
UPF1-210ENST00000600689 HDGFL1Q5TGJ6 251 aa21.83■■□□□ 1.09
UPF1-210ENST00000600689 HYPKQ9NX55 129 aa21.83■■□□□ 1.09
UPF1-210ENST00000600689 A0A087WWV3 80 aa21.83■■□□□ 1.09
UPF1-210ENST00000600689 PPFIA3O75145 1194 aa21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms