RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 FLIIQ13045 1269 aa25.62■■□□□ 1.69
SHKBP1-222ENST00000600320 USPL1Q5W0Q7 1092 aa25.62■■□□□ 1.69
SHKBP1-222ENST00000600320 MAP3K15Q6ZN16 1313 aa25.62■■□□□ 1.69
SHKBP1-222ENST00000600320 SCN7AQ01118 1682 aa25.61■■□□□ 1.69
SHKBP1-222ENST00000600320 ZBTB3Q9H5J0 574 aa25.61■■□□□ 1.69
SHKBP1-222ENST00000600320 RCAN3Q9UKA8 241 aa25.61■■□□□ 1.69
SHKBP1-222ENST00000600320 BCORQ6W2J9 1755 aa25.61■■□□□ 1.69
SHKBP1-222ENST00000600320 HLFQ16534 295 aa25.6■■□□□ 1.69
SHKBP1-222ENST00000600320 KIF6Q6ZMV9 814 aa25.6■■□□□ 1.69
SHKBP1-222ENST00000600320 BRPF1P55201 1214 aaPredicted RBP25.59■■□□□ 1.69
SHKBP1-222ENST00000600320 ZPR1O75312 459 aa25.58■■□□□ 1.69
SHKBP1-222ENST00000600320 GYS1P13807 737 aa25.58■■□□□ 1.69
SHKBP1-222ENST00000600320 ADCY9O60503 1353 aa25.57■■□□□ 1.68
SHKBP1-222ENST00000600320 ANKRD13DQ6ZTN6 518 aa25.57■■□□□ 1.68
SHKBP1-222ENST00000600320 PLBD2Q8NHP8 589 aa25.57■■□□□ 1.68
SHKBP1-222ENST00000600320 NOB1Q9ULX3 412 aaKnown RBP25.57■■□□□ 1.68
SHKBP1-222ENST00000600320 ERVV-1B6SEH8 477 aa25.56■■□□□ 1.68
SHKBP1-222ENST00000600320 FKBP5Q13451 457 aaPredicted RBP25.56■■□□□ 1.68
SHKBP1-222ENST00000600320 FKBP8Q14318 412 aa25.56■■□□□ 1.68
SHKBP1-222ENST00000600320 MSL1Q68DK7 614 aa25.55■■□□□ 1.68
SHKBP1-222ENST00000600320 ARFGEF2Q9Y6D5 1785 aa25.54■■□□□ 1.68
SHKBP1-222ENST00000600320 PI4KAP2A4QPH2 592 aa25.54■■□□□ 1.68
SHKBP1-222ENST00000600320 DDX58O95786 925 aaKnown RBP25.54■■□□□ 1.68
SHKBP1-222ENST00000600320 KSR2Q6VAB6 950 aa25.54■■□□□ 1.68
SHKBP1-222ENST00000600320 GIGYF2Q6Y7W6 1299 aaKnown RBP25.54■■□□□ 1.68
SHKBP1-222ENST00000600320 RIC3Q7Z5B4 369 aa25.54■■□□□ 1.68
SHKBP1-222ENST00000600320 PI4KAP1Q8N8J0 262 aa25.54■■□□□ 1.68
SHKBP1-222ENST00000600320 MAP3K2Q9Y2U5 619 aa25.54■■□□□ 1.68
SHKBP1-222ENST00000600320 F6X3S4 739 aa25.53■■□□□ 1.68
SHKBP1-222ENST00000600320 ZBTB7AO95365 584 aa25.53■■□□□ 1.68
SHKBP1-222ENST00000600320 SLC16A10Q8TF71 515 aa25.53■■□□□ 1.68
SHKBP1-222ENST00000600320 PTPRCP08575 1304 aa25.53■■□□□ 1.68
SHKBP1-222ENST00000600320 NUP98P52948 1817 aa25.53■■□□□ 1.68
SHKBP1-222ENST00000600320 TBC1D9BQ66K14 1250 aa25.52■■□□□ 1.68
SHKBP1-222ENST00000600320 TNNQ9UQP3 1299 aa25.52■■□□□ 1.68
SHKBP1-222ENST00000600320 KIF16BQ96L93 1317 aa25.52■■□□□ 1.68
SHKBP1-222ENST00000600320 RGL2O15211 777 aa25.51■■□□□ 1.67
SHKBP1-222ENST00000600320 CLEC4GQ6UXB4 293 aa25.51■■□□□ 1.67
SHKBP1-222ENST00000600320 FRAT1Q92837 279 aaPredicted RBP25.51■■□□□ 1.67
SHKBP1-222ENST00000600320 DNAAF4Q8WXU2 420 aa25.5■■□□□ 1.67
SHKBP1-222ENST00000600320 ZNF652Q9Y2D9 606 aa25.5■■□□□ 1.67
SHKBP1-222ENST00000600320 ATP10DQ9P241 1426 aa25.49■■□□□ 1.67
SHKBP1-222ENST00000600320 TCIRG1Q13488 830 aa25.49■■□□□ 1.67
SHKBP1-222ENST00000600320 NFIXQ14938 502 aa25.49■■□□□ 1.67
SHKBP1-222ENST00000600320 BICDL1Q6ZP65 573 aa25.49■■□□□ 1.67
SHKBP1-222ENST00000600320 NLGN1Q8N2Q7 840 aa25.49■■□□□ 1.67
SHKBP1-222ENST00000600320 METTL22Q9BUU2 404 aaPredicted RBP25.49■■□□□ 1.67
SHKBP1-222ENST00000600320 GPTP24298 496 aa25.48■■□□□ 1.67
SHKBP1-222ENST00000600320 TM4SF1P30408 202 aa25.48■■□□□ 1.67
SHKBP1-222ENST00000600320 MYD88Q99836 296 aa25.48■■□□□ 1.67
SHKBP1-222ENST00000600320 MTFR1LQ9H019 292 aa25.48■■□□□ 1.67
SHKBP1-222ENST00000600320 ATF5Q9Y2D1 282 aaPredicted RBP25.48■■□□□ 1.67
SHKBP1-222ENST00000600320 ANKRD36CQ5JPF3 1778 aa25.47■■□□□ 1.67
SHKBP1-222ENST00000600320 COL24A1Q17RW2 1714 aa25.47■■□□□ 1.67
SHKBP1-222ENST00000600320 ATP5J2-PTCD1G3V325 749 aa25.47■■□□□ 1.67
SHKBP1-222ENST00000600320 DDR1Q08345 913 aa25.47■■□□□ 1.67
SHKBP1-222ENST00000600320 ZNF34Q8IZ26 560 aa25.47■■□□□ 1.67
SHKBP1-222ENST00000600320 ARHGAP45Q92619 1136 aa25.47■■□□□ 1.67
SHKBP1-222ENST00000600320 ISCA1Q9BUE6 129 aa25.47■■□□□ 1.67
SHKBP1-222ENST00000600320 NIP7Q9Y221 180 aaKnown RBP eCLIP25.47■■□□□ 1.67
SHKBP1-222ENST00000600320 UBN2Q6ZU65 1347 aa25.46■■□□□ 1.67
SHKBP1-222ENST00000600320 TRIM27P14373 513 aa25.46■■□□□ 1.67
SHKBP1-222ENST00000600320 HSP90AB3PQ58FF7 597 aa25.46■■□□□ 1.67
SHKBP1-222ENST00000600320 ZKSCAN2Q63HK3 967 aa25.46■■□□□ 1.67
SHKBP1-222ENST00000600320 API5Q9BZZ5 524 aaKnown RBP25.46■■□□□ 1.67
SHKBP1-222ENST00000600320 IPO8O15397 1037 aaKnown RBP25.45■■□□□ 1.66
SHKBP1-222ENST00000600320 PLIN1O60240 522 aa25.45■■□□□ 1.66
SHKBP1-222ENST00000600320 IGKV5-2P06315 115 aa25.45■■□□□ 1.66
SHKBP1-222ENST00000600320 ATF7IPQ6VMQ6 1270 aa25.45■■□□□ 1.66
SHKBP1-222ENST00000600320 MMP10P09238 476 aa25.44■■□□□ 1.66
SHKBP1-222ENST00000600320 SLC4A10Q6U841 1118 aa25.44■■□□□ 1.66
SHKBP1-222ENST00000600320 BEND3Q5T5X7 828 aa25.43■■□□□ 1.66
SHKBP1-222ENST00000600320 POLRMTO00411 1230 aaKnown RBP25.42■■□□□ 1.66
SHKBP1-222ENST00000600320 CWF19L2Q2TBE0 894 aaKnown RBP25.42■■□□□ 1.66
SHKBP1-222ENST00000600320 SUSD4Q5VX71 490 aa25.42■■□□□ 1.66
SHKBP1-222ENST00000600320 NLRP10Q86W26 655 aa25.42■■□□□ 1.66
SHKBP1-222ENST00000600320 CLUAP1Q96AJ1 413 aa25.42■■□□□ 1.66
SHKBP1-222ENST00000600320 SETDB2Q96T68 719 aa25.42■■□□□ 1.66
SHKBP1-222ENST00000600320 SGIP1Q9BQI5 828 aa25.42■■□□□ 1.66
SHKBP1-222ENST00000600320 ABCC4O15439 1325 aa25.41■■□□□ 1.66
SHKBP1-222ENST00000600320 NEXNQ0ZGT2 675 aa25.41■■□□□ 1.66
SHKBP1-222ENST00000600320 TRIM28Q13263 835 aaKnown RBP25.41■■□□□ 1.66
SHKBP1-222ENST00000600320 PXDNLA1KZ92 1463 aa25.4■■□□□ 1.66
SHKBP1-222ENST00000600320 FAM177BA6PVY3 158 aa25.4■■□□□ 1.66
SHKBP1-222ENST00000600320 NEURL1BA8MQ27 555 aa25.4■■□□□ 1.66
SHKBP1-222ENST00000600320 PTGER2P43116 358 aa25.4■■□□□ 1.66
SHKBP1-222ENST00000600320 LINS1Q8NG48 757 aa25.4■■□□□ 1.66
SHKBP1-222ENST00000600320 CARMIL3Q8ND23 1372 aa25.4■■□□□ 1.66
SHKBP1-222ENST00000600320 SERPINB2P05120 415 aa25.39■■□□□ 1.66
SHKBP1-222ENST00000600320 RLBP1P12271 317 aa25.39■■□□□ 1.66
SHKBP1-222ENST00000600320 PARP10Q53GL7 1025 aa25.39■■□□□ 1.66
SHKBP1-222ENST00000600320 AFDNP55196 1824 aaKnown RBP25.38■■□□□ 1.65
SHKBP1-222ENST00000600320 RRP1P56182 461 aaKnown RBP25.38■■□□□ 1.65
SHKBP1-222ENST00000600320 SPON1Q9HCB6 807 aa25.38■■□□□ 1.65
SHKBP1-222ENST00000600320 N4BP2Q86UW6 1770 aaPredicted RBP25.37■■□□□ 1.65
SHKBP1-222ENST00000600320 NTSR2O95665 410 aa25.37■■□□□ 1.65
SHKBP1-222ENST00000600320 DZIP1LQ8IYY4 767 aaKnown RBP25.37■■□□□ 1.65
SHKBP1-222ENST00000600320 CCDC191Q8NCU4 936 aa25.37■■□□□ 1.65
SHKBP1-222ENST00000600320 SRCIN1Q9C0H9 1055 aa25.37■■□□□ 1.65
SHKBP1-222ENST00000600320 PARP3Q9Y6F1 533 aa25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms