RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 PLBD2Q8NHP8 589 aa18.53■□□□□ 0.56
VRK3-212ENST00000596814 PPP4R2Q9NY27 417 aa18.53■□□□□ 0.56
VRK3-212ENST00000596814 AAMPQ13685 434 aa18.52■□□□□ 0.56
VRK3-212ENST00000596814 KIF6Q6ZMV9 814 aa18.52■□□□□ 0.56
VRK3-212ENST00000596814 CHMP4BQ9H444 224 aaKnown RBP18.52■□□□□ 0.56
VRK3-212ENST00000596814 PLSCR1O15162 318 aa18.52■□□□□ 0.55
VRK3-212ENST00000596814 RC3H1Q5TC82 1133 aaKnown RBP18.52■□□□□ 0.55
VRK3-212ENST00000596814 EIF5P55010 431 aaKnown RBP18.51■□□□□ 0.55
VRK3-212ENST00000596814 BEND3Q5T5X7 828 aa18.51■□□□□ 0.55
VRK3-212ENST00000596814 SRCIN1Q9C0H9 1055 aa18.51■□□□□ 0.55
VRK3-212ENST00000596814 LRRC4BQ9NT99 713 aa18.51■□□□□ 0.55
VRK3-212ENST00000596814 AFDNP55196 1824 aaKnown RBP18.51■□□□□ 0.55
VRK3-212ENST00000596814 NEXNQ0ZGT2 675 aa18.5■□□□□ 0.55
VRK3-212ENST00000596814 METTL22Q9BUU2 404 aaPredicted RBP18.5■□□□□ 0.55
VRK3-212ENST00000596814 COL15A1P39059 1388 aa18.5■□□□□ 0.55
VRK3-212ENST00000596814 ZBTB7BO15156 539 aaPredicted RBP18.49■□□□□ 0.55
VRK3-212ENST00000596814 TXNRD1Q16881 649 aa18.49■□□□□ 0.55
VRK3-212ENST00000596814 ZBTB3Q9H5J0 574 aa18.49■□□□□ 0.55
VRK3-212ENST00000596814 BCORQ6W2J9 1755 aa18.49■□□□□ 0.55
VRK3-212ENST00000596814 HMGB2P26583 209 aaKnown RBP18.49■□□□□ 0.55
VRK3-212ENST00000596814 ARXQ96QS3 562 aa18.49■□□□□ 0.55
VRK3-212ENST00000596814 ZBTB40Q9NUA8 1239 aa18.49■□□□□ 0.55
VRK3-212ENST00000596814 MAP3K15Q6ZN16 1313 aa18.49■□□□□ 0.55
VRK3-212ENST00000596814 ANKRD36CQ5JPF3 1778 aa18.48■□□□□ 0.55
VRK3-212ENST00000596814 GNPATO15228 680 aa18.48■□□□□ 0.55
VRK3-212ENST00000596814 DZIP3Q86Y13 1208 aaKnown RBP18.48■□□□□ 0.55
VRK3-212ENST00000596814 LINS1Q8NG48 757 aa18.48■□□□□ 0.55
VRK3-212ENST00000596814 MYD88Q99836 296 aa18.48■□□□□ 0.55
VRK3-212ENST00000596814 ALDH1L1O75891 902 aa18.47■□□□□ 0.55
VRK3-212ENST00000596814 MEIS3Q99687 375 aa18.47■□□□□ 0.55
VRK3-212ENST00000596814 UBR3Q6ZT12 1888 aa18.47■□□□□ 0.55
VRK3-212ENST00000596814 NUP98P52948 1817 aa18.47■□□□□ 0.55
VRK3-212ENST00000596814 SCN7AQ01118 1682 aa18.47■□□□□ 0.55
VRK3-212ENST00000596814 RPS6KA4O75676 772 aa18.46■□□□□ 0.55
VRK3-212ENST00000596814 PROM2Q8N271 834 aa18.46■□□□□ 0.55
VRK3-212ENST00000596814 AK7Q96M32 723 aa18.46■□□□□ 0.55
VRK3-212ENST00000596814 IBTKQ9P2D0 1353 aaPredicted RBP18.46■□□□□ 0.55
VRK3-212ENST00000596814 A0A087WZG4 1122 aa18.46■□□□□ 0.55
VRK3-212ENST00000596814 IGKV5-2P06315 115 aa18.46■□□□□ 0.55
VRK3-212ENST00000596814 CWF19L2Q2TBE0 894 aaKnown RBP18.46■□□□□ 0.55
VRK3-212ENST00000596814 CCDC136Q96JN2 1154 aa18.46■□□□□ 0.55
VRK3-212ENST00000596814 TBC1D2BQ9UPU7 963 aa18.46■□□□□ 0.55
VRK3-212ENST00000596814 RTCBQ9Y3I0 505 aaKnown RBP18.46■□□□□ 0.55
VRK3-212ENST00000596814 C4AP0C0L4 1744 aa18.45■□□□□ 0.54
VRK3-212ENST00000596814 NEURL1BA8MQ27 555 aa18.45■□□□□ 0.54
VRK3-212ENST00000596814 ERVV-1B6SEH8 477 aa18.45■□□□□ 0.54
VRK3-212ENST00000596814 SF3B2Q13435 895 aaKnown RBP18.45■□□□□ 0.54
VRK3-212ENST00000596814 B4GALNT3Q6L9W6 998 aa18.45■□□□□ 0.54
VRK3-212ENST00000596814 GNAI3P08754 354 aa18.44■□□□□ 0.54
VRK3-212ENST00000596814 GIGYF2Q6Y7W6 1299 aaKnown RBP18.43■□□□□ 0.54
VRK3-212ENST00000596814 C1orf115Q9H7X2 142 aa18.43■□□□□ 0.54
VRK3-212ENST00000596814 ATP5J2-PTCD1G3V325 749 aa18.43■□□□□ 0.54
VRK3-212ENST00000596814 HSP90AB3PQ58FF7 597 aa18.43■□□□□ 0.54
VRK3-212ENST00000596814 USP44Q9H0E7 712 aa18.43■□□□□ 0.54
VRK3-212ENST00000596814 CAMTA2O94983 1202 aa18.42■□□□□ 0.54
VRK3-212ENST00000596814 UBTFL1P0CB47 393 aaPredicted RBP18.42■□□□□ 0.54
VRK3-212ENST00000596814 TCIRG1Q13488 830 aa18.42■□□□□ 0.54
VRK3-212ENST00000596814 HLFQ16534 295 aa18.42■□□□□ 0.54
VRK3-212ENST00000596814 C9orf78Q9NZ63 289 aaPredicted RBP18.42■□□□□ 0.54
VRK3-212ENST00000596814 PCDHB15Q9Y5E8 787 aa18.42■□□□□ 0.54
VRK3-212ENST00000596814 BAG6P46379 1132 aa18.41■□□□□ 0.54
VRK3-212ENST00000596814 EN1Q05925 392 aaPredicted RBP18.41■□□□□ 0.54
VRK3-212ENST00000596814 GCKRQ14397 625 aa18.41■□□□□ 0.54
VRK3-212ENST00000596814 ISCA1Q9BUE6 129 aa18.41■□□□□ 0.54
VRK3-212ENST00000596814 GRM8O00222 908 aa18.4■□□□□ 0.54
VRK3-212ENST00000596814 GNAI2P04899 355 aa18.4■□□□□ 0.54
VRK3-212ENST00000596814 ADRA2BP18089 450 aa18.4■□□□□ 0.54
VRK3-212ENST00000596814 AMIGO3Q86WK7 504 aa18.4■□□□□ 0.54
VRK3-212ENST00000596814 CAMKK2Q96RR4 588 aa18.4■□□□□ 0.54
VRK3-212ENST00000596814 TUBGCP6Q96RT7 1819 aa18.4■□□□□ 0.54
VRK3-212ENST00000596814 PHF14O94880 888 aa18.4■□□□□ 0.54
VRK3-212ENST00000596814 SMIM5Q71RC9 77 aa18.4■□□□□ 0.54
VRK3-212ENST00000596814 CCDC191Q8NCU4 936 aa18.4■□□□□ 0.54
VRK3-212ENST00000596814 CWC25Q9NXE8 425 aaPredicted RBP18.4■□□□□ 0.54
VRK3-212ENST00000596814 ZNF652Q9Y2D9 606 aa18.4■□□□□ 0.54
VRK3-212ENST00000596814 NBPF7P0C2Y1 421 aaPredicted RBP18.39■□□□□ 0.53
VRK3-212ENST00000596814 EZH2Q15910 746 aaKnown RBP18.39■□□□□ 0.53
VRK3-212ENST00000596814 TRAPPC3LQ5T215 181 aa18.39■□□□□ 0.53
VRK3-212ENST00000596814 NARFQ9UHQ1 456 aa18.39■□□□□ 0.53
VRK3-212ENST00000596814 UTYO14607 1347 aa18.39■□□□□ 0.53
VRK3-212ENST00000596814 RGL2O15211 777 aa18.38■□□□□ 0.53
VRK3-212ENST00000596814 SSFA2P28290 1259 aa18.38■□□□□ 0.53
VRK3-212ENST00000596814 TRIM28Q13263 835 aaKnown RBP18.38■□□□□ 0.53
VRK3-212ENST00000596814 ARHGEF1Q92888 912 aaKnown RBP18.38■□□□□ 0.53
VRK3-212ENST00000596814 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.37■□□□□ 0.53
VRK3-212ENST00000596814 GPTP24298 496 aa18.37■□□□□ 0.53
VRK3-212ENST00000596814 ZNF827Q17R98 1081 aa18.37■□□□□ 0.53
VRK3-212ENST00000596814 CCDC125Q86Z20 511 aa18.37■□□□□ 0.53
VRK3-212ENST00000596814 AKT1S1Q96B36 256 aa18.37■□□□□ 0.53
VRK3-212ENST00000596814 HDAC5Q9UQL6 1122 aa18.37■□□□□ 0.53
VRK3-212ENST00000596814 LRRFIP2Q9Y608 721 aaKnown RBP18.37■□□□□ 0.53
VRK3-212ENST00000596814 ZPR1O75312 459 aa18.37■□□□□ 0.53
VRK3-212ENST00000596814 CLEC4GQ6UXB4 293 aa18.37■□□□□ 0.53
VRK3-212ENST00000596814 USP42Q9H9J4 1324 aaKnown RBP18.36■□□□□ 0.53
VRK3-212ENST00000596814 RFC4P35249 363 aa18.36■□□□□ 0.53
VRK3-212ENST00000596814 USPL1Q5W0Q7 1092 aa18.36■□□□□ 0.53
VRK3-212ENST00000596814 CEP85Q6P2H3 762 aa18.36■□□□□ 0.53
VRK3-212ENST00000596814 DEFB132Q7Z7B7 95 aa18.36■□□□□ 0.53
VRK3-212ENST00000596814 NLRP10Q86W26 655 aa18.36■□□□□ 0.53
VRK3-212ENST00000596814 ZNF34Q8IZ26 560 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms