RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 HTRA3P83110 453 aa23.34■■□□□ 1.33
SHKBP1-203ENST00000594298 JMYQ8N9B5 988 aa23.34■■□□□ 1.33
SHKBP1-203ENST00000594298 CNKSR1Q969H4 720 aa23.34■■□□□ 1.33
SHKBP1-203ENST00000594298 COL11A2P13942 1736 aaPredicted RBP23.33■■□□□ 1.33
SHKBP1-203ENST00000594298 BCORQ6W2J9 1755 aa23.33■■□□□ 1.33
SHKBP1-203ENST00000594298 DDX10Q13206 875 aaKnown RBP23.33■■□□□ 1.33
SHKBP1-203ENST00000594298 NPHP1O15259 732 aa23.32■■□□□ 1.32
SHKBP1-203ENST00000594298 DPY19L2Q6NUT2 758 aa23.32■■□□□ 1.32
SHKBP1-203ENST00000594298 MASTLQ96GX5 879 aa23.32■■□□□ 1.32
SHKBP1-203ENST00000594298 ZNF652Q9Y2D9 606 aa23.32■■□□□ 1.32
SHKBP1-203ENST00000594298 TIAM2Q8IVF5 1701 aa23.32■■□□□ 1.32
SHKBP1-203ENST00000594298 PIP4K2AP48426 406 aaPredicted RBP23.31■■□□□ 1.32
SHKBP1-203ENST00000594298 SOGA3Q5TF21 947 aa23.31■■□□□ 1.32
SHKBP1-203ENST00000594298 POTECB2RU33 542 aa23.3■■□□□ 1.32
SHKBP1-203ENST00000594298 DCTN1Q14203 1278 aa23.3■■□□□ 1.32
SHKBP1-203ENST00000594298 ERFEQ4G0M1 354 aa23.3■■□□□ 1.32
SHKBP1-203ENST00000594298 PRPF40BQ6NWY9 871 aaKnown RBP23.3■■□□□ 1.32
SHKBP1-203ENST00000594298 TAOK3Q9H2K8 898 aa23.3■■□□□ 1.32
SHKBP1-203ENST00000594298 ZNF219Q9P2Y4 722 aaPredicted RBP23.3■■□□□ 1.32
SHKBP1-203ENST00000594298 NBPF5PQ86XG9 351 aaPredicted RBP23.29■■□□□ 1.32
SHKBP1-203ENST00000594298 NBPF26B4DH59 902 aa23.28■■□□□ 1.32
SHKBP1-203ENST00000594298 TAF7Q15545 349 aaPredicted RBP23.28■■□□□ 1.32
SHKBP1-203ENST00000594298 NBPF10Q6P3W6 841 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-203ENST00000594298 NBPF15Q8N660 670 aa23.28■■□□□ 1.32
SHKBP1-203ENST00000594298 FER1L6Q2WGJ9 1857 aa23.28■■□□□ 1.32
SHKBP1-203ENST00000594298 KLRG2A4D1S0 409 aaPredicted RBP23.27■■□□□ 1.32
SHKBP1-203ENST00000594298 TPTE2Q6XPS3 522 aa23.26■■□□□ 1.31
SHKBP1-203ENST00000594298 C7orf43Q8WVR3 580 aa23.26■■□□□ 1.31
SHKBP1-203ENST00000594298 NPR1P16066 1061 aa23.24■■□□□ 1.31
SHKBP1-203ENST00000594298 NIP7Q9Y221 180 aaKnown RBP eCLIP23.24■■□□□ 1.31
SHKBP1-203ENST00000594298 ARFGEF2Q9Y6D5 1785 aa23.23■■□□□ 1.31
SHKBP1-203ENST00000594298 RALBP1Q15311 655 aa23.23■■□□□ 1.31
SHKBP1-203ENST00000594298 PNISRQ8TF01 805 aaKnown RBP23.23■■□□□ 1.31
SHKBP1-203ENST00000594298 SLX4Q8IY92 1834 aa23.23■■□□□ 1.31
SHKBP1-203ENST00000594298 CCDC88AQ3V6T2 1871 aa23.23■■□□□ 1.31
SHKBP1-203ENST00000594298 ZNF316A6NFI3 1004 aaPredicted RBP23.22■■□□□ 1.31
SHKBP1-203ENST00000594298 NEFMP07197 916 aa23.22■■□□□ 1.31
SHKBP1-203ENST00000594298 CCDC93Q567U6 631 aa23.22■■□□□ 1.31
SHKBP1-203ENST00000594298 DICER1Q9UPY3 1922 aaKnown RBP23.21■■□□□ 1.31
SHKBP1-203ENST00000594298 PLEKHF1Q96S99 279 aa23.21■■□□□ 1.31
SHKBP1-203ENST00000594298 MIS18AQ9NYP9 233 aa23.21■■□□□ 1.31
SHKBP1-203ENST00000594298 DDNO94850 711 aaPredicted RBP23.2■■□□□ 1.3
SHKBP1-203ENST00000594298 HLFQ16534 295 aa23.2■■□□□ 1.3
SHKBP1-203ENST00000594298 ERVV-1B6SEH8 477 aa23.18■■□□□ 1.3
SHKBP1-203ENST00000594298 FKBP4Q02790 459 aaKnown RBP eCLIP23.18■■□□□ 1.3
SHKBP1-203ENST00000594298 LAMB4A4D0S4 1761 aa23.17■■□□□ 1.3
SHKBP1-203ENST00000594298 EIF4A1P60842 406 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-203ENST00000594298 CHADLQ6NUI6 762 aa23.17■■□□□ 1.3
SHKBP1-203ENST00000594298 RTKN2Q8IZC4 609 aa23.17■■□□□ 1.3
SHKBP1-203ENST00000594298 L3MBTL3Q96JM7 780 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-203ENST00000594298 IQCA1LA6NCM1 817 aa23.16■■□□□ 1.3
SHKBP1-203ENST00000594298 ALDH1B1P30837 517 aa23.16■■□□□ 1.3
SHKBP1-203ENST00000594298 NFE2L2Q16236 605 aa23.16■■□□□ 1.3
SHKBP1-203ENST00000594298 MAP3K15Q6ZN16 1313 aa23.15■■□□□ 1.3
SHKBP1-203ENST00000594298 FAM177BA6PVY3 158 aa23.15■■□□□ 1.3
SHKBP1-203ENST00000594298 CRY2Q49AN0 593 aa23.15■■□□□ 1.3
SHKBP1-203ENST00000594298 NYXQ9GZU5 481 aa23.15■■□□□ 1.3
SHKBP1-203ENST00000594298 PNNQ9H307 717 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-203ENST00000594298 KDM3BQ7LBC6 1761 aa23.14■■□□□ 1.3
SHKBP1-203ENST00000594298 GTF2E1P29083 439 aaPredicted RBP23.14■■□□□ 1.29
SHKBP1-203ENST00000594298 COL13A1Q5TAT6 717 aaPredicted RBP23.14■■□□□ 1.29
SHKBP1-203ENST00000594298 CACNA1SQ13698 1873 aa23.13■■□□□ 1.29
SHKBP1-203ENST00000594298 ZNF277Q9NRM2 450 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-203ENST00000594298 CREBZFQ9NS37 354 aa23.13■■□□□ 1.29
SHKBP1-203ENST00000594298 IBTKQ9P2D0 1353 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-203ENST00000594298 POTEIP0CG38 1075 aa23.12■■□□□ 1.29
SHKBP1-203ENST00000594298 POTEJP0CG39 1038 aa23.12■■□□□ 1.29
SHKBP1-203ENST00000594298 OLFM4Q6UX06 510 aa23.12■■□□□ 1.29
SHKBP1-203ENST00000594298 KIF6Q6ZMV9 814 aa23.12■■□□□ 1.29
SHKBP1-203ENST00000594298 NGEFQ8N5V2 710 aa23.12■■□□□ 1.29
SHKBP1-203ENST00000594298 THUMPD2Q9BTF0 503 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-203ENST00000594298 ABCC12Q96J65 1359 aa23.12■■□□□ 1.29
SHKBP1-203ENST00000594298 ERBB4Q15303 1308 aa23.11■■□□□ 1.29
SHKBP1-203ENST00000594298 RIC1Q4ADV7 1423 aa23.11■■□□□ 1.29
SHKBP1-203ENST00000594298 SNED1Q8TER0 1413 aa23.11■■□□□ 1.29
SHKBP1-203ENST00000594298 LDHDQ86WU2 507 aa23.11■■□□□ 1.29
SHKBP1-203ENST00000594298 TAF1DQ9H5J8 278 aaPredicted RBP23.11■■□□□ 1.29
SHKBP1-203ENST00000594298 RRP7AQ9Y3A4 280 aaKnown RBP23.11■■□□□ 1.29
SHKBP1-203ENST00000594298 MAPK8IP3Q9UPT6 1336 aa23.1■■□□□ 1.29
SHKBP1-203ENST00000594298 TTLL7Q6ZT98 887 aa23.1■■□□□ 1.29
SHKBP1-203ENST00000594298 ZNF541Q9H0D2 1346 aa23.09■■□□□ 1.29
SHKBP1-203ENST00000594298 FZD9O00144 591 aa23.09■■□□□ 1.29
SHKBP1-203ENST00000594298 HSPA1AP0DMV8 641 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-203ENST00000594298 HSPA1BP0DMV9 641 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-203ENST00000594298 IARSP41252 1262 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-203ENST00000594298 CC2D2BQ6DHV5 1058 aa23.09■■□□□ 1.29
SHKBP1-203ENST00000594298 NUTM1Q86Y26 1132 aa23.09■■□□□ 1.29
SHKBP1-203ENST00000594298 PSMD1Q99460 953 aa23.09■■□□□ 1.29
SHKBP1-203ENST00000594298 DLG5Q8TDM6 1919 aa23.09■■□□□ 1.29
SHKBP1-203ENST00000594298 UBN2Q6ZU65 1347 aa23.08■■□□□ 1.29
SHKBP1-203ENST00000594298 MYBBP1AQ9BQG0 1328 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-203ENST00000594298 MYL6BP14649 208 aa23.08■■□□□ 1.29
SHKBP1-203ENST00000594298 HOXA10P31260 410 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-203ENST00000594298 SYNE4Q8N205 404 aa23.08■■□□□ 1.29
SHKBP1-203ENST00000594298 PASKQ96RG2 1323 aa23.08■■□□□ 1.28
SHKBP1-203ENST00000594298 ZNF34Q8IZ26 560 aa23.07■■□□□ 1.28
SHKBP1-203ENST00000594298 ZBTB3Q9H5J0 574 aa23.07■■□□□ 1.28
SHKBP1-203ENST00000594298 SCN4AP35499 1836 aa23.07■■□□□ 1.28
SHKBP1-203ENST00000594298 GRIPAP1Q4V328 841 aa23.06■■□□□ 1.28
SHKBP1-203ENST00000594298 SUSD4Q5VX71 490 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms