RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 HYPKQ9NX55 129 aa11.59□□□□□ -0.55
SS18-220ENST00000582092 F6X3S4 739 aa11.58□□□□□ -0.56
SS18-220ENST00000582092 KCNQ3O43525 872 aa11.58□□□□□ -0.56
SS18-220ENST00000582092 GIGYF1O75420 1035 aaPredicted RBP11.58□□□□□ -0.56
SS18-220ENST00000582092 GNAI2P04899 355 aa11.58□□□□□ -0.56
SS18-220ENST00000582092 PTGER2P43116 358 aa11.58□□□□□ -0.56
SS18-220ENST00000582092 ANKRD45Q5TZF3 282 aa11.58□□□□□ -0.56
SS18-220ENST00000582092 ZNF790Q6PG37 636 aa11.58□□□□□ -0.56
SS18-220ENST00000582092 ERICH6Q7L0X2 663 aa11.58□□□□□ -0.56
SS18-220ENST00000582092 NPM2Q86SE8 214 aaKnown RBP11.58□□□□□ -0.56
SS18-220ENST00000582092 COL23A1Q86Y22 540 aaPredicted RBP11.58□□□□□ -0.56
SS18-220ENST00000582092 FMNL2Q96PY5 1086 aa11.58□□□□□ -0.56
SS18-220ENST00000582092 BACH2Q9BYV9 841 aa11.58□□□□□ -0.56
SS18-220ENST00000582092 RTCBQ9Y3I0 505 aaKnown RBP11.58□□□□□ -0.56
SS18-220ENST00000582092 COL24A1Q17RW2 1714 aa11.57□□□□□ -0.56
SS18-220ENST00000582092 GNPATO15228 680 aa11.57□□□□□ -0.56
SS18-220ENST00000582092 PTCD1O75127 700 aaKnown RBP11.57□□□□□ -0.56
SS18-220ENST00000582092 PHF14O94880 888 aa11.57□□□□□ -0.56
SS18-220ENST00000582092 SNRPA1P09661 255 aaKnown RBP11.57□□□□□ -0.56
SS18-220ENST00000582092 RC3H1Q5TC82 1133 aaKnown RBP11.57□□□□□ -0.56
SS18-220ENST00000582092 SRCIN1Q9C0H9 1055 aa11.57□□□□□ -0.56
SS18-220ENST00000582092 UPF2Q9HAU5 1272 aaKnown RBP11.57□□□□□ -0.56
SS18-220ENST00000582092 CHPF2Q9P2E5 772 aa11.57□□□□□ -0.56
SS18-220ENST00000582092 CACNA1FO60840 1977 aa11.57□□□□□ -0.56
SS18-220ENST00000582092 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.56□□□□□ -0.56
SS18-220ENST00000582092 ADRA2BP18089 450 aa11.56□□□□□ -0.56
SS18-220ENST00000582092 COL5A3P25940 1745 aaPredicted RBP11.56□□□□□ -0.56
SS18-220ENST00000582092 SLC39A6Q13433 755 aa11.56□□□□□ -0.56
SS18-220ENST00000582092 TRAPPC3LQ5T215 181 aa11.56□□□□□ -0.56
SS18-220ENST00000582092 SKAP1Q86WV1 359 aa11.56□□□□□ -0.56
SS18-220ENST00000582092 SMC5Q8IY18 1101 aa11.56□□□□□ -0.56
SS18-220ENST00000582092 KLHL34Q8N239 644 aa11.56□□□□□ -0.56
SS18-220ENST00000582092 LINC00116Q8NCU8 138 aa11.56□□□□□ -0.56
SS18-220ENST00000582092 SGIP1Q9BQI5 828 aa11.56□□□□□ -0.56
SS18-220ENST00000582092 FHDC1Q9C0D6 1143 aaPredicted RBP11.56□□□□□ -0.56
SS18-220ENST00000582092 UBTFL1P0CB47 393 aaPredicted RBP11.55□□□□□ -0.56
SS18-220ENST00000582092 NUCB1Q02818 461 aa11.55□□□□□ -0.56
SS18-220ENST00000582092 NEXNQ0ZGT2 675 aa11.55□□□□□ -0.56
SS18-220ENST00000582092 ITPK1Q13572 414 aa11.55□□□□□ -0.56
SS18-220ENST00000582092 CHD1LQ86WJ1 897 aa11.55□□□□□ -0.56
SS18-220ENST00000582092 ANKRD44Q8N8A2 993 aa11.55□□□□□ -0.56
SS18-220ENST00000582092 DNAAF4Q8WXU2 420 aa11.55□□□□□ -0.56
SS18-220ENST00000582092 SYT17Q9BSW7 474 aa11.55□□□□□ -0.56
SS18-220ENST00000582092 PHAXQ9H814 394 aaKnown RBP11.55□□□□□ -0.56
SS18-220ENST00000582092 DAXXQ9UER7 740 aaPredicted RBP11.55□□□□□ -0.56
SS18-220ENST00000582092 ADAMTS7Q9UKP4 1686 aa11.55□□□□□ -0.56
SS18-220ENST00000582092 CNTNAP4Q9C0A0 1308 aa11.55□□□□□ -0.56
SS18-220ENST00000582092 SRCAPQ6ZRS2 3230 aa11.54□□□□□ -0.56
SS18-220ENST00000582092 RFC4P35249 363 aa11.54□□□□□ -0.56
SS18-220ENST00000582092 RIC3Q7Z5B4 369 aa11.54□□□□□ -0.56
SS18-220ENST00000582092 MEIS3Q99687 375 aa11.54□□□□□ -0.56
SS18-220ENST00000582092 BCL11AQ9H165 835 aa11.54□□□□□ -0.56
SS18-220ENST00000582092 DDX21Q9NR30 783 aaKnown RBP eCLIP11.54□□□□□ -0.56
SS18-220ENST00000582092 C9orf78Q9NZ63 289 aaPredicted RBP11.54□□□□□ -0.56
SS18-220ENST00000582092 MRC1P22897 1456 aa11.54□□□□□ -0.56
SS18-220ENST00000582092 MYH14Q7Z406 1995 aaKnown RBP11.54□□□□□ -0.56
SS18-220ENST00000582092 PI4KAP2A4QPH2 592 aa11.53□□□□□ -0.56
SS18-220ENST00000582092 EIF5BO60841 1220 aaKnown RBP11.53□□□□□ -0.56
SS18-220ENST00000582092 RPS6KA4O75676 772 aa11.53□□□□□ -0.56
SS18-220ENST00000582092 AIMP1Q12904 312 aaKnown RBP11.53□□□□□ -0.56
SS18-220ENST00000582092 KSR2Q6VAB6 950 aa11.53□□□□□ -0.56
SS18-220ENST00000582092 VSIG10Q8N0Z9 540 aa11.53□□□□□ -0.56
SS18-220ENST00000582092 PI4KAP1Q8N8J0 262 aa11.53□□□□□ -0.56
SS18-220ENST00000582092 TEX13AQ9BXU3 409 aaPredicted RBP11.53□□□□□ -0.56
SS18-220ENST00000582092 LNPKQ9C0E8 428 aa11.53□□□□□ -0.56
SS18-220ENST00000582092 KDM3BQ7LBC6 1761 aa11.53□□□□□ -0.56
SS18-220ENST00000582092 CICQ96RK0 1608 aaPredicted RBP11.53□□□□□ -0.56
SS18-220ENST00000582092 CHD4Q14839 1912 aa11.52□□□□□ -0.56
SS18-220ENST00000582092 ALDH1L1O75891 902 aa11.52□□□□□ -0.57
SS18-220ENST00000582092 MYL6BP14649 208 aa11.52□□□□□ -0.57
SS18-220ENST00000582092 MSL1Q68DK7 614 aa11.52□□□□□ -0.57
SS18-220ENST00000582092 CEP85Q6P2H3 762 aa11.52□□□□□ -0.57
SS18-220ENST00000582092 NLGN1Q8N2Q7 840 aa11.52□□□□□ -0.57
SS18-220ENST00000582092 DDRGK1Q96HY6 314 aa11.52□□□□□ -0.57
SS18-220ENST00000582092 ZNF496Q96IT1 587 aaPredicted RBP11.52□□□□□ -0.57
SS18-220ENST00000582092 MAP3K2Q9Y2U5 619 aa11.52□□□□□ -0.57
SS18-220ENST00000582092 SIPA1L3O60292 1781 aaPredicted RBP11.51□□□□□ -0.57
SS18-220ENST00000582092 STARD3NLO95772 234 aa11.51□□□□□ -0.57
SS18-220ENST00000582092 ANXA1P04083 346 aa11.51□□□□□ -0.57
SS18-220ENST00000582092 CRKLP46109 303 aaKnown RBP11.51□□□□□ -0.57
SS18-220ENST00000582092 SLC4A9Q96Q91 983 aa11.51□□□□□ -0.57
SS18-220ENST00000582092 DCTPP1Q9H773 170 aa11.51□□□□□ -0.57
SS18-220ENST00000582092 TJP1Q07157 1748 aa11.51□□□□□ -0.57
SS18-220ENST00000582092 UBR2Q8IWV8 1755 aa11.51□□□□□ -0.57
SS18-220ENST00000582092 PXDNLA1KZ92 1463 aa11.51□□□□□ -0.57
SS18-220ENST00000582092 ATP8B2P98198 1209 aa11.5□□□□□ -0.57
SS18-220ENST00000582092 GPR162Q16538 588 aa11.5□□□□□ -0.57
SS18-220ENST00000582092 CCDC87Q9NVE4 849 aa11.5□□□□□ -0.57
SS18-220ENST00000582092 CD2APQ9Y5K6 639 aa11.5□□□□□ -0.57
SS18-220ENST00000582092 APBB1O00213 710 aa11.49□□□□□ -0.57
SS18-220ENST00000582092 ZPR1O75312 459 aa11.49□□□□□ -0.57
SS18-220ENST00000582092 ANKRD13DQ6ZTN6 518 aa11.49□□□□□ -0.57
SS18-220ENST00000582092 DNAJC10Q8IXB1 793 aa11.49□□□□□ -0.57
SS18-220ENST00000582092 ARHGEF1Q92888 912 aaKnown RBP11.49□□□□□ -0.57
SS18-220ENST00000582092 LRRFIP2Q9Y608 721 aaKnown RBP11.49□□□□□ -0.57
SS18-220ENST00000582092 HEG1Q9ULI3 1381 aa11.49□□□□□ -0.57
SS18-220ENST00000582092 PRAMEF22A3QJZ6 481 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 OS9Q13438 667 aaPredicted RBP11.48□□□□□ -0.57
SS18-220ENST00000582092 C8orf34Q49A92 452 aa11.48□□□□□ -0.57
SS18-220ENST00000582092 HSP90AB4PQ58FF6 505 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms