RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ST5P78524 1137 aa28.1■■■□□ 2.09
VPS53-216ENST00000574029 HTRA3P83110 453 aa28.1■■■□□ 2.09
VPS53-216ENST00000574029 CLEC4GQ6UXB4 293 aa28.1■■■□□ 2.09
VPS53-216ENST00000574029 CACNA1SQ13698 1873 aa28.1■■■□□ 2.09
VPS53-216ENST00000574029 SLX4Q8IY92 1834 aa28.09■■■□□ 2.09
VPS53-216ENST00000574029 DCTN1Q14203 1278 aa28.09■■■□□ 2.09
VPS53-216ENST00000574029 STYK1Q6J9G0 422 aa28.09■■■□□ 2.09
VPS53-216ENST00000574029 NPHP1O15259 732 aa28.08■■■□□ 2.09
VPS53-216ENST00000574029 SRGNP10124 158 aa28.08■■■□□ 2.09
VPS53-216ENST00000574029 CNKSR1Q969H4 720 aa28.08■■■□□ 2.09
VPS53-216ENST00000574029 KLRG1Q96E93 195 aa28.08■■■□□ 2.09
VPS53-216ENST00000574029 ZNF219Q9P2Y4 722 aaPredicted RBP28.08■■■□□ 2.09
VPS53-216ENST00000574029 LTBP3Q9NS15 1303 aa28.08■■■□□ 2.09
VPS53-216ENST00000574029 NBPF26B4DH59 902 aa28.06■■■□□ 2.08
VPS53-216ENST00000574029 NBPF10Q6P3W6 841 aaKnown RBP28.06■■■□□ 2.08
VPS53-216ENST00000574029 NBPF15Q8N660 670 aa28.06■■■□□ 2.08
VPS53-216ENST00000574029 ZNF652Q9Y2D9 606 aa28.06■■■□□ 2.08
VPS53-216ENST00000574029 RGL2O15211 777 aa28.05■■■□□ 2.08
VPS53-216ENST00000574029 TAF7Q15545 349 aaPredicted RBP28.05■■■□□ 2.08
VPS53-216ENST00000574029 DPY19L2Q6NUT2 758 aa28.05■■■□□ 2.08
VPS53-216ENST00000574029 MASTLQ96GX5 879 aa28.05■■■□□ 2.08
VPS53-216ENST00000574029 DLG5Q8TDM6 1919 aa28.04■■■□□ 2.08
VPS53-216ENST00000574029 LAMB4A4D0S4 1761 aa28.04■■■□□ 2.08
VPS53-216ENST00000574029 POTECB2RU33 542 aa28.04■■■□□ 2.08
VPS53-216ENST00000574029 ERFEQ4G0M1 354 aa28.04■■■□□ 2.08
VPS53-216ENST00000574029 PRPF40BQ6NWY9 871 aaKnown RBP28.04■■■□□ 2.08
VPS53-216ENST00000574029 JMYQ8N9B5 988 aa28.04■■■□□ 2.08
VPS53-216ENST00000574029 TAOK3Q9H2K8 898 aa28.04■■■□□ 2.08
VPS53-216ENST00000574029 NBPF5PQ86XG9 351 aaPredicted RBP28.03■■■□□ 2.08
VPS53-216ENST00000574029 SOGA3Q5TF21 947 aa28.02■■■□□ 2.08
VPS53-216ENST00000574029 KDM3BQ7LBC6 1761 aa28.01■■■□□ 2.08
VPS53-216ENST00000574029 KLRG2A4D1S0 409 aaPredicted RBP28■■■□□ 2.07
VPS53-216ENST00000574029 C7orf43Q8WVR3 580 aa27.99■■■□□ 2.07
VPS53-216ENST00000574029 MIS18AQ9NYP9 233 aa27.99■■■□□ 2.07
VPS53-216ENST00000574029 NIP7Q9Y221 180 aaKnown RBP eCLIP27.99■■■□□ 2.07
VPS53-216ENST00000574029 TPTE2Q6XPS3 522 aa27.98■■■□□ 2.07
VPS53-216ENST00000574029 NPR1P16066 1061 aa27.97■■■□□ 2.07
VPS53-216ENST00000574029 PLEKHF1Q96S99 279 aa27.97■■■□□ 2.07
VPS53-216ENST00000574029 NEFMP07197 916 aa27.96■■■□□ 2.07
VPS53-216ENST00000574029 PNISRQ8TF01 805 aaKnown RBP27.96■■■□□ 2.07
VPS53-216ENST00000574029 HLFQ16534 295 aa27.95■■■□□ 2.06
VPS53-216ENST00000574029 CCDC93Q567U6 631 aa27.93■■■□□ 2.06
VPS53-216ENST00000574029 DDNO94850 711 aaPredicted RBP27.92■■■□□ 2.06
VPS53-216ENST00000574029 NUP98P52948 1817 aa27.92■■■□□ 2.06
VPS53-216ENST00000574029 EIF4A1P60842 406 aaKnown RBP27.91■■■□□ 2.06
VPS53-216ENST00000574029 NFE2L2Q16236 605 aa27.91■■■□□ 2.06
VPS53-216ENST00000574029 FAM177BA6PVY3 158 aa27.9■■■□□ 2.06
VPS53-216ENST00000574029 ERVV-1B6SEH8 477 aa27.9■■■□□ 2.06
VPS53-216ENST00000574029 FKBP4Q02790 459 aaKnown RBP eCLIP27.89■■■□□ 2.06
VPS53-216ENST00000574029 SCN4AP35499 1836 aa27.88■■■□□ 2.05
VPS53-216ENST00000574029 ALDH1B1P30837 517 aa27.88■■■□□ 2.05
VPS53-216ENST00000574029 THUMPD2Q9BTF0 503 aaKnown RBP27.88■■■□□ 2.05
VPS53-216ENST00000574029 CHADLQ6NUI6 762 aa27.87■■■□□ 2.05
VPS53-216ENST00000574029 NGEFQ8N5V2 710 aa27.87■■■□□ 2.05
VPS53-216ENST00000574029 PNNQ9H307 717 aaKnown RBP27.87■■■□□ 2.05
VPS53-216ENST00000574029 MAP3K15Q6ZN16 1313 aa27.87■■■□□ 2.05
VPS53-216ENST00000574029 GTF2E1P29083 439 aaPredicted RBP27.86■■■□□ 2.05
VPS53-216ENST00000574029 OLFM4Q6UX06 510 aa27.86■■■□□ 2.05
VPS53-216ENST00000574029 RTKN2Q8IZC4 609 aa27.86■■■□□ 2.05
VPS53-216ENST00000574029 L3MBTL3Q96JM7 780 aaPredicted RBP27.86■■■□□ 2.05
VPS53-216ENST00000574029 NYXQ9GZU5 481 aa27.86■■■□□ 2.05
VPS53-216ENST00000574029 POTEIP0CG38 1075 aa27.85■■■□□ 2.05
VPS53-216ENST00000574029 POTEJP0CG39 1038 aa27.85■■■□□ 2.05
VPS53-216ENST00000574029 CRY2Q49AN0 593 aa27.85■■■□□ 2.05
VPS53-216ENST00000574029 TTLL7Q6ZT98 887 aa27.85■■■□□ 2.05
VPS53-216ENST00000574029 ZNF277Q9NRM2 450 aaPredicted RBP27.85■■■□□ 2.05
VPS53-216ENST00000574029 RRP7AQ9Y3A4 280 aaKnown RBP27.85■■■□□ 2.05
VPS53-216ENST00000574029 ABCC12Q96J65 1359 aa27.85■■■□□ 2.05
VPS53-216ENST00000574029 IQCA1LA6NCM1 817 aa27.84■■■□□ 2.05
VPS53-216ENST00000574029 KIF6Q6ZMV9 814 aa27.84■■■□□ 2.05
VPS53-216ENST00000574029 MAPK8IP3Q9UPT6 1336 aa27.84■■■□□ 2.05
VPS53-216ENST00000574029 IBTKQ9P2D0 1353 aaPredicted RBP27.83■■■□□ 2.05
VPS53-216ENST00000574029 SNED1Q8TER0 1413 aa27.83■■■□□ 2.05
VPS53-216ENST00000574029 MYL6BP14649 208 aa27.82■■■□□ 2.04
VPS53-216ENST00000574029 COL13A1Q5TAT6 717 aaPredicted RBP27.82■■■□□ 2.04
VPS53-216ENST00000574029 NUTM1Q86Y26 1132 aa27.82■■■□□ 2.04
VPS53-216ENST00000574029 RIC1Q4ADV7 1423 aa27.82■■■□□ 2.04
VPS53-216ENST00000574029 TAF1DQ9H5J8 278 aaPredicted RBP27.81■■■□□ 2.04
VPS53-216ENST00000574029 ZNF541Q9H0D2 1346 aa27.81■■■□□ 2.04
VPS53-216ENST00000574029 IARSP41252 1262 aaKnown RBP27.8■■■□□ 2.04
VPS53-216ENST00000574029 SYNE4Q8N205 404 aa27.8■■■□□ 2.04
VPS53-216ENST00000574029 CREBZFQ9NS37 354 aa27.8■■■□□ 2.04
VPS53-216ENST00000574029 ERBB4Q15303 1308 aa27.8■■■□□ 2.04
VPS53-216ENST00000574029 UBN2Q6ZU65 1347 aa27.8■■■□□ 2.04
VPS53-216ENST00000574029 LDHDQ86WU2 507 aa27.79■■■□□ 2.04
VPS53-216ENST00000574029 ZBTB3Q9H5J0 574 aa27.79■■■□□ 2.04
VPS53-216ENST00000574029 GPTP24298 496 aa27.78■■■□□ 2.04
VPS53-216ENST00000574029 HOXA10P31260 410 aaPredicted RBP27.78■■■□□ 2.04
VPS53-216ENST00000574029 ZNF34Q8IZ26 560 aa27.78■■■□□ 2.04
VPS53-216ENST00000574029 PSMD1Q99460 953 aa27.78■■■□□ 2.04
VPS53-216ENST00000574029 FZD9O00144 591 aa27.77■■■□□ 2.04
VPS53-216ENST00000574029 SUSD4Q5VX71 490 aa27.77■■■□□ 2.04
VPS53-216ENST00000574029 ADAMTSL1Q8N6G6 1762 aa27.76■■■□□ 2.03
VPS53-216ENST00000574029 PASKQ96RG2 1323 aa27.76■■■□□ 2.03
VPS53-216ENST00000574029 HSPA1AP0DMV8 641 aaKnown RBP27.76■■■□□ 2.03
VPS53-216ENST00000574029 HSPA1BP0DMV9 641 aaKnown RBP27.76■■■□□ 2.03
VPS53-216ENST00000574029 CC2D2BQ6DHV5 1058 aa27.76■■■□□ 2.03
VPS53-216ENST00000574029 GIGYF2Q6Y7W6 1299 aaKnown RBP27.76■■■□□ 2.03
VPS53-216ENST00000574029 TSPYL4Q9UJ04 414 aa27.76■■■□□ 2.03
VPS53-216ENST00000574029 LRP10Q7Z4F1 713 aa27.75■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms