RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 PRKAR2BP31323 418 aa23.62■■□□□ 1.37
CLK3-221ENST00000568139 DZIP3Q86Y13 1208 aaKnown RBP23.62■■□□□ 1.37
CLK3-221ENST00000568139 USP16Q9Y5T5 823 aa23.62■■□□□ 1.37
CLK3-221ENST00000568139 PCNTO95613 3336 aa23.61■■□□□ 1.37
CLK3-221ENST00000568139 ST5P78524 1137 aa23.61■■□□□ 1.37
CLK3-221ENST00000568139 TAOK3Q9H2K8 898 aa23.61■■□□□ 1.37
CLK3-221ENST00000568139 MASTLQ96GX5 879 aa23.6■■□□□ 1.37
CLK3-221ENST00000568139 NPHP1O15259 732 aa23.59■■□□□ 1.37
CLK3-221ENST00000568139 PRPF40BQ6NWY9 871 aaKnown RBP23.59■■□□□ 1.37
CLK3-221ENST00000568139 CLEC4GQ6UXB4 293 aa23.59■■□□□ 1.37
CLK3-221ENST00000568139 SOGA3Q5TF21 947 aa23.58■■□□□ 1.37
CLK3-221ENST00000568139 CFAP53Q96M91 514 aa23.58■■□□□ 1.37
CLK3-221ENST00000568139 PRAMEF22A3QJZ6 481 aa23.57■■□□□ 1.36
CLK3-221ENST00000568139 PIP4K2AP48426 406 aaPredicted RBP23.57■■□□□ 1.36
CLK3-221ENST00000568139 SNRPA1P09661 255 aaKnown RBP23.56■■□□□ 1.36
CLK3-221ENST00000568139 C7orf43Q8WVR3 580 aa23.56■■□□□ 1.36
CLK3-221ENST00000568139 NUDCQ9Y266 331 aa23.56■■□□□ 1.36
CLK3-221ENST00000568139 DDNO94850 711 aaPredicted RBP23.55■■□□□ 1.36
CLK3-221ENST00000568139 HSPA1AP0DMV8 641 aaKnown RBP23.54■■□□□ 1.36
CLK3-221ENST00000568139 HSPA1BP0DMV9 641 aaKnown RBP23.54■■□□□ 1.36
CLK3-221ENST00000568139 CHADLQ6NUI6 762 aa23.54■■□□□ 1.36
CLK3-221ENST00000568139 MCM10Q7L590 875 aa23.54■■□□□ 1.36
CLK3-221ENST00000568139 NBPF5PQ86XG9 351 aaPredicted RBP23.54■■□□□ 1.36
CLK3-221ENST00000568139 RTF1Q92541 710 aaKnown RBP23.54■■□□□ 1.36
CLK3-221ENST00000568139 ZNF652Q9Y2D9 606 aa23.54■■□□□ 1.36
CLK3-221ENST00000568139 KLRG2A4D1S0 409 aaPredicted RBP23.53■■□□□ 1.36
CLK3-221ENST00000568139 RGL2O15211 777 aa23.53■■□□□ 1.36
CLK3-221ENST00000568139 TNS4Q8IZW8 715 aa23.53■■□□□ 1.36
CLK3-221ENST00000568139 U2AF1L5P0DN76 240 aaPredicted RBP23.52■■□□□ 1.36
CLK3-221ENST00000568139 U2AF1Q01081 240 aaKnown RBP eCLIP23.52■■□□□ 1.36
CLK3-221ENST00000568139 CREBZFQ9NS37 354 aa23.52■■□□□ 1.36
CLK3-221ENST00000568139 NBPF26B4DH59 902 aa23.51■■□□□ 1.35
CLK3-221ENST00000568139 HTATSF1O43719 755 aaKnown RBP23.51■■□□□ 1.35
CLK3-221ENST00000568139 POTEIP0CG38 1075 aa23.51■■□□□ 1.35
CLK3-221ENST00000568139 POTEJP0CG39 1038 aa23.51■■□□□ 1.35
CLK3-221ENST00000568139 NPR1P16066 1061 aa23.51■■□□□ 1.35
CLK3-221ENST00000568139 NBPF10Q6P3W6 841 aaKnown RBP23.51■■□□□ 1.35
CLK3-221ENST00000568139 NBPF15Q8N660 670 aa23.51■■□□□ 1.35
CLK3-221ENST00000568139 SCN4AP35499 1836 aa23.51■■□□□ 1.35
CLK3-221ENST00000568139 CCDC93Q567U6 631 aa23.5■■□□□ 1.35
CLK3-221ENST00000568139 TPTE2Q6XPS3 522 aa23.5■■□□□ 1.35
CLK3-221ENST00000568139 L3MBTL3Q96JM7 780 aaPredicted RBP23.5■■□□□ 1.35
CLK3-221ENST00000568139 PPP2R1AP30153 589 aa23.49■■□□□ 1.35
CLK3-221ENST00000568139 DCTN1Q14203 1278 aa23.49■■□□□ 1.35
CLK3-221ENST00000568139 NIP7Q9Y221 180 aaKnown RBP eCLIP23.49■■□□□ 1.35
CLK3-221ENST00000568139 IQCA1LA6NCM1 817 aa23.48■■□□□ 1.35
CLK3-221ENST00000568139 FKBP4Q02790 459 aaKnown RBP eCLIP23.48■■□□□ 1.35
CLK3-221ENST00000568139 TAF7Q15545 349 aaPredicted RBP23.46■■□□□ 1.35
CLK3-221ENST00000568139 LDHDQ86WU2 507 aa23.46■■□□□ 1.35
CLK3-221ENST00000568139 TAF1DQ9H5J8 278 aaPredicted RBP23.46■■□□□ 1.35
CLK3-221ENST00000568139 PASKQ96RG2 1323 aa23.45■■□□□ 1.34
CLK3-221ENST00000568139 HLFQ16534 295 aa23.45■■□□□ 1.34
CLK3-221ENST00000568139 RTKN2Q8IZC4 609 aa23.45■■□□□ 1.34
CLK3-221ENST00000568139 CAPN15O75808 1086 aa23.44■■□□□ 1.34
CLK3-221ENST00000568139 ZNF277Q9NRM2 450 aaPredicted RBP23.44■■□□□ 1.34
CLK3-221ENST00000568139 MKRN1Q9UHC7 482 aaKnown RBP23.44■■□□□ 1.34
CLK3-221ENST00000568139 LAMB4A4D0S4 1761 aa23.44■■□□□ 1.34
CLK3-221ENST00000568139 ALDH1B1P30837 517 aa23.43■■□□□ 1.34
CLK3-221ENST00000568139 OLFM4Q6UX06 510 aa23.43■■□□□ 1.34
CLK3-221ENST00000568139 ZNF541Q9H0D2 1346 aa23.42■■□□□ 1.34
CLK3-221ENST00000568139 FAM177BA6PVY3 158 aa23.42■■□□□ 1.34
CLK3-221ENST00000568139 CNTNAP1P78357 1384 aa23.41■■□□□ 1.34
CLK3-221ENST00000568139 DLG5Q8TDM6 1919 aa23.41■■□□□ 1.34
CLK3-221ENST00000568139 NUP98P52948 1817 aa23.41■■□□□ 1.34
CLK3-221ENST00000568139 MIS18AQ9NYP9 233 aa23.41■■□□□ 1.34
CLK3-221ENST00000568139 FZD9O00144 591 aa23.4■■□□□ 1.34
CLK3-221ENST00000568139 ITGBL1O95965 494 aaPredicted RBP23.4■■□□□ 1.34
CLK3-221ENST00000568139 SYNE4Q8N205 404 aa23.4■■□□□ 1.34
CLK3-221ENST00000568139 KDM3BQ7LBC6 1761 aa23.4■■□□□ 1.34
CLK3-221ENST00000568139 ADAMTSL1Q8N6G6 1762 aa23.4■■□□□ 1.34
CLK3-221ENST00000568139 ERVV-1B6SEH8 477 aa23.39■■□□□ 1.33
CLK3-221ENST00000568139 GTF2E1P29083 439 aaPredicted RBP23.39■■□□□ 1.33
CLK3-221ENST00000568139 IARSP41252 1262 aaKnown RBP23.39■■□□□ 1.33
CLK3-221ENST00000568139 CRY2Q49AN0 593 aa23.39■■□□□ 1.33
CLK3-221ENST00000568139 HACL1Q9UJ83 578 aa23.39■■□□□ 1.33
CLK3-221ENST00000568139 SNED1Q8TER0 1413 aa23.39■■□□□ 1.33
CLK3-221ENST00000568139 PNISRQ8TF01 805 aaKnown RBP23.38■■□□□ 1.33
CLK3-221ENST00000568139 NYXQ9GZU5 481 aa23.38■■□□□ 1.33
CLK3-221ENST00000568139 TMEM88BA6NKF7 163 aa23.37■■□□□ 1.33
CLK3-221ENST00000568139 EPHX2P34913 555 aa23.37■■□□□ 1.33
CLK3-221ENST00000568139 EAPPQ56P03 285 aaPredicted RBP23.37■■□□□ 1.33
CLK3-221ENST00000568139 PSMD1Q99460 953 aa23.37■■□□□ 1.33
CLK3-221ENST00000568139 MAP3K15Q6ZN16 1313 aa23.36■■□□□ 1.33
CLK3-221ENST00000568139 ABCC12Q96J65 1359 aa23.36■■□□□ 1.33
CLK3-221ENST00000568139 EIF4A1P60842 406 aaKnown RBP23.35■■□□□ 1.33
CLK3-221ENST00000568139 PNMA8AQ86V59 439 aaPredicted RBP23.35■■□□□ 1.33
CLK3-221ENST00000568139 NUTM1Q86Y26 1132 aa23.35■■□□□ 1.33
CLK3-221ENST00000568139 NGEFQ8N5V2 710 aa23.35■■□□□ 1.33
CLK3-221ENST00000568139 FOXN1O15353 648 aa23.34■■□□□ 1.33
CLK3-221ENST00000568139 CC2D2BQ6DHV5 1058 aa23.34■■□□□ 1.33
CLK3-221ENST00000568139 GPC2Q8N158 579 aa23.34■■□□□ 1.33
CLK3-221ENST00000568139 PLEKHF1Q96S99 279 aa23.34■■□□□ 1.33
CLK3-221ENST00000568139 CLEC11AQ9Y240 323 aa23.34■■□□□ 1.33
CLK3-221ENST00000568139 RNF123Q5XPI4 1314 aa23.33■■□□□ 1.33
CLK3-221ENST00000568139 RIC1Q4ADV7 1423 aa23.33■■□□□ 1.33
CLK3-221ENST00000568139 IBTKQ9P2D0 1353 aaPredicted RBP23.33■■□□□ 1.33
CLK3-221ENST00000568139 NEFMP07197 916 aa23.33■■□□□ 1.33
CLK3-221ENST00000568139 HOXA10P31260 410 aaPredicted RBP23.33■■□□□ 1.33
CLK3-221ENST00000568139 VEGFBP49765 207 aa23.33■■□□□ 1.33
CLK3-221ENST00000568139 TTLL7Q6ZT98 887 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms