RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 NBPF15Q8N660 670 aa22.43■■□□□ 1.18
HDGFL3-203ENST00000563404 FER1L6Q2WGJ9 1857 aa22.43■■□□□ 1.18
HDGFL3-203ENST00000563404 VEGFAP15692 232 aaPredicted RBP22.42■■□□□ 1.18
HDGFL3-203ENST00000563404 SMC1BQ8NDV3 1235 aa22.42■■□□□ 1.18
HDGFL3-203ENST00000563404 KLRG1Q96E93 195 aa22.42■■□□□ 1.18
HDGFL3-203ENST00000563404 SLX4Q8IY92 1834 aa22.41■■□□□ 1.18
HDGFL3-203ENST00000563404 SRGNP10124 158 aa22.41■■□□□ 1.18
HDGFL3-203ENST00000563404 HTATSF1O43719 755 aaKnown RBP22.4■■□□□ 1.18
HDGFL3-203ENST00000563404 ST5P78524 1137 aa22.4■■□□□ 1.18
HDGFL3-203ENST00000563404 STYK1Q6J9G0 422 aa22.4■■□□□ 1.18
HDGFL3-203ENST00000563404 CLEC4GQ6UXB4 293 aa22.4■■□□□ 1.18
HDGFL3-203ENST00000563404 PRPF40BQ6NWY9 871 aaKnown RBP22.39■■□□□ 1.17
HDGFL3-203ENST00000563404 CNKSR1Q969H4 720 aa22.39■■□□□ 1.17
HDGFL3-203ENST00000563404 MIS18AQ9NYP9 233 aa22.39■■□□□ 1.17
HDGFL3-203ENST00000563404 LTBP3Q9NS15 1303 aa22.38■■□□□ 1.17
HDGFL3-203ENST00000563404 NPHP1O15259 732 aa22.38■■□□□ 1.17
HDGFL3-203ENST00000563404 ERFEQ4G0M1 354 aa22.38■■□□□ 1.17
HDGFL3-203ENST00000563404 JMYQ8N9B5 988 aa22.38■■□□□ 1.17
HDGFL3-203ENST00000563404 MASTLQ96GX5 879 aa22.38■■□□□ 1.17
HDGFL3-203ENST00000563404 DICER1Q9UPY3 1922 aaKnown RBP22.37■■□□□ 1.17
HDGFL3-203ENST00000563404 TAF7Q15545 349 aaPredicted RBP22.37■■□□□ 1.17
HDGFL3-203ENST00000563404 NBPF5PQ86XG9 351 aaPredicted RBP22.37■■□□□ 1.17
HDGFL3-203ENST00000563404 TAOK3Q9H2K8 898 aa22.37■■□□□ 1.17
HDGFL3-203ENST00000563404 CACNA1SQ13698 1873 aa22.37■■□□□ 1.17
HDGFL3-203ENST00000563404 ARFGEF2Q9Y6D5 1785 aa22.36■■□□□ 1.17
HDGFL3-203ENST00000563404 C7orf43Q8WVR3 580 aa22.36■■□□□ 1.17
HDGFL3-203ENST00000563404 PCNTO95613 3336 aa22.36■■□□□ 1.17
HDGFL3-203ENST00000563404 KLRG2A4D1S0 409 aaPredicted RBP22.35■■□□□ 1.17
HDGFL3-203ENST00000563404 HLFQ16534 295 aa22.35■■□□□ 1.17
HDGFL3-203ENST00000563404 ZNF652Q9Y2D9 606 aa22.35■■□□□ 1.17
HDGFL3-203ENST00000563404 DPY19L2Q6NUT2 758 aa22.34■■□□□ 1.17
HDGFL3-203ENST00000563404 PLEKHF1Q96S99 279 aa22.34■■□□□ 1.17
HDGFL3-203ENST00000563404 NIP7Q9Y221 180 aaKnown RBP eCLIP22.34■■□□□ 1.17
HDGFL3-203ENST00000563404 RGL2O15211 777 aa22.33■■□□□ 1.17
HDGFL3-203ENST00000563404 DLG5Q8TDM6 1919 aa22.32■■□□□ 1.16
HDGFL3-203ENST00000563404 FAM177BA6PVY3 158 aa22.32■■□□□ 1.16
HDGFL3-203ENST00000563404 DDNO94850 711 aaPredicted RBP22.32■■□□□ 1.16
HDGFL3-203ENST00000563404 NPR1P16066 1061 aa22.32■■□□□ 1.16
HDGFL3-203ENST00000563404 LAMB4A4D0S4 1761 aa22.31■■□□□ 1.16
HDGFL3-203ENST00000563404 KDM3BQ7LBC6 1761 aa22.31■■□□□ 1.16
HDGFL3-203ENST00000563404 SOGA3Q5TF21 947 aa22.31■■□□□ 1.16
HDGFL3-203ENST00000563404 OLFM4Q6UX06 510 aa22.31■■□□□ 1.16
HDGFL3-203ENST00000563404 TPTE2Q6XPS3 522 aa22.31■■□□□ 1.16
HDGFL3-203ENST00000563404 THUMPD2Q9BTF0 503 aaKnown RBP22.31■■□□□ 1.16
HDGFL3-203ENST00000563404 POTEIP0CG38 1075 aa22.29■■□□□ 1.16
HDGFL3-203ENST00000563404 POTEJP0CG39 1038 aa22.29■■□□□ 1.16
HDGFL3-203ENST00000563404 NGEFQ8N5V2 710 aa22.29■■□□□ 1.16
HDGFL3-203ENST00000563404 EIF4A1P60842 406 aaKnown RBP22.28■■□□□ 1.16
HDGFL3-203ENST00000563404 NFE2L2Q16236 605 aa22.28■■□□□ 1.16
HDGFL3-203ENST00000563404 CCDC93Q567U6 631 aa22.28■■□□□ 1.16
HDGFL3-203ENST00000563404 PNISRQ8TF01 805 aaKnown RBP22.27■■□□□ 1.16
HDGFL3-203ENST00000563404 ABCC12Q96J65 1359 aa22.26■■□□□ 1.15
HDGFL3-203ENST00000563404 FKBP4Q02790 459 aaKnown RBP eCLIP22.26■■□□□ 1.15
HDGFL3-203ENST00000563404 COL13A1Q5TAT6 717 aaPredicted RBP22.26■■□□□ 1.15
HDGFL3-203ENST00000563404 TTLL7Q6ZT98 887 aa22.26■■□□□ 1.15
HDGFL3-203ENST00000563404 ZNF277Q9NRM2 450 aaPredicted RBP22.25■■□□□ 1.15
HDGFL3-203ENST00000563404 RRP7AQ9Y3A4 280 aaKnown RBP22.25■■□□□ 1.15
HDGFL3-203ENST00000563404 MAP3K15Q6ZN16 1313 aa22.25■■□□□ 1.15
HDGFL3-203ENST00000563404 ERVV-1B6SEH8 477 aa22.24■■□□□ 1.15
HDGFL3-203ENST00000563404 NEFMP07197 916 aa22.24■■□□□ 1.15
HDGFL3-203ENST00000563404 CHADLQ6NUI6 762 aa22.24■■□□□ 1.15
HDGFL3-203ENST00000563404 NUTM1Q86Y26 1132 aa22.24■■□□□ 1.15
HDGFL3-203ENST00000563404 ZNF541Q9H0D2 1346 aa22.24■■□□□ 1.15
HDGFL3-203ENST00000563404 SNED1Q8TER0 1413 aa22.23■■□□□ 1.15
HDGFL3-203ENST00000563404 MYL6BP14649 208 aa22.23■■□□□ 1.15
HDGFL3-203ENST00000563404 CRY2Q49AN0 593 aa22.23■■□□□ 1.15
HDGFL3-203ENST00000563404 L3MBTL3Q96JM7 780 aaPredicted RBP22.23■■□□□ 1.15
HDGFL3-203ENST00000563404 NUP98P52948 1817 aa22.22■■□□□ 1.15
HDGFL3-203ENST00000563404 GTF2E1P29083 439 aaPredicted RBP22.22■■□□□ 1.15
HDGFL3-203ENST00000563404 UBN2Q6ZU65 1347 aa22.22■■□□□ 1.15
HDGFL3-203ENST00000563404 ALDH1B1P30837 517 aa22.21■■□□□ 1.15
HDGFL3-203ENST00000563404 RTKN2Q8IZC4 609 aa22.21■■□□□ 1.15
HDGFL3-203ENST00000563404 ZBTB3Q9H5J0 574 aa22.21■■□□□ 1.15
HDGFL3-203ENST00000563404 GPTP24298 496 aa22.2■■□□□ 1.14
HDGFL3-203ENST00000563404 SLC51AQ86UW1 340 aa22.2■■□□□ 1.14
HDGFL3-203ENST00000563404 SYNE4Q8N205 404 aa22.2■■□□□ 1.14
HDGFL3-203ENST00000563404 NYXQ9GZU5 481 aa22.2■■□□□ 1.14
HDGFL3-203ENST00000563404 TAF1DQ9H5J8 278 aaPredicted RBP22.2■■□□□ 1.14
HDGFL3-203ENST00000563404 SUSD4Q5VX71 490 aa22.19■■□□□ 1.14
HDGFL3-203ENST00000563404 KIF6Q6ZMV9 814 aa22.19■■□□□ 1.14
HDGFL3-203ENST00000563404 MAPK8IP3Q9UPT6 1336 aa22.19■■□□□ 1.14
HDGFL3-203ENST00000563404 IQCA1LA6NCM1 817 aa22.18■■□□□ 1.14
HDGFL3-203ENST00000563404 HSPA1AP0DMV8 641 aaKnown RBP22.18■■□□□ 1.14
HDGFL3-203ENST00000563404 HSPA1BP0DMV9 641 aaKnown RBP22.18■■□□□ 1.14
HDGFL3-203ENST00000563404 IARSP41252 1262 aaKnown RBP22.18■■□□□ 1.14
HDGFL3-203ENST00000563404 LRP10Q7Z4F1 713 aa22.18■■□□□ 1.14
HDGFL3-203ENST00000563404 ZNF34Q8IZ26 560 aa22.18■■□□□ 1.14
HDGFL3-203ENST00000563404 CREBZFQ9NS37 354 aa22.18■■□□□ 1.14
HDGFL3-203ENST00000563404 SCN4AP35499 1836 aa22.17■■□□□ 1.14
HDGFL3-203ENST00000563404 RIC1Q4ADV7 1423 aa22.17■■□□□ 1.14
HDGFL3-203ENST00000563404 IBTKQ9P2D0 1353 aaPredicted RBP22.17■■□□□ 1.14
HDGFL3-203ENST00000563404 PASKQ96RG2 1323 aa22.17■■□□□ 1.14
HDGFL3-203ENST00000563404 FZD9O00144 591 aa22.17■■□□□ 1.14
HDGFL3-203ENST00000563404 C3orf67Q6ZVT6 689 aa22.17■■□□□ 1.14
HDGFL3-203ENST00000563404 LDHDQ86WU2 507 aa22.17■■□□□ 1.14
HDGFL3-203ENST00000563404 COL4A5P29400 1685 aa22.17■■□□□ 1.14
HDGFL3-203ENST00000563404 NTSR2O95665 410 aa22.16■■□□□ 1.14
HDGFL3-203ENST00000563404 HOXA10P31260 410 aaPredicted RBP22.16■■□□□ 1.14
HDGFL3-203ENST00000563404 PDIA6Q15084 440 aa22.16■■□□□ 1.14
HDGFL3-203ENST00000563404 GIGYF2Q6Y7W6 1299 aaKnown RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms