RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 ERFEQ4G0M1 354 aa17.29■□□□□ 0.36
SF3B3-202ENST00000562722 NBPF5PQ86XG9 351 aaPredicted RBP17.29■□□□□ 0.36
SF3B3-202ENST00000562722 CNKSR1Q969H4 720 aa17.29■□□□□ 0.36
SF3B3-202ENST00000562722 ANKRD31Q8N7Z5 1873 aa17.29■□□□□ 0.36
SF3B3-202ENST00000562722 COL11A2P13942 1736 aaPredicted RBP17.28■□□□□ 0.36
SF3B3-202ENST00000562722 NEFMP07197 916 aa17.28■□□□□ 0.36
SF3B3-202ENST00000562722 STYK1Q6J9G0 422 aa17.28■□□□□ 0.36
SF3B3-202ENST00000562722 TAOK3Q9H2K8 898 aa17.28■□□□□ 0.36
SF3B3-202ENST00000562722 PRPF40BQ6NWY9 871 aaKnown RBP17.27■□□□□ 0.36
SF3B3-202ENST00000562722 MASTLQ96GX5 879 aa17.27■□□□□ 0.36
SF3B3-202ENST00000562722 SRGNP10124 158 aa17.26■□□□□ 0.35
SF3B3-202ENST00000562722 SOGA3Q5TF21 947 aa17.26■□□□□ 0.35
SF3B3-202ENST00000562722 CLEC4GQ6UXB4 293 aa17.26■□□□□ 0.35
SF3B3-202ENST00000562722 BCORQ6W2J9 1755 aa17.25■□□□□ 0.35
SF3B3-202ENST00000562722 FAM177BA6PVY3 158 aa17.25■□□□□ 0.35
SF3B3-202ENST00000562722 HTATSF1O43719 755 aaKnown RBP17.25■□□□□ 0.35
SF3B3-202ENST00000562722 NIP7Q9Y221 180 aaKnown RBP eCLIP17.25■□□□□ 0.35
SF3B3-202ENST00000562722 TAF7Q15545 349 aaPredicted RBP17.24■□□□□ 0.35
SF3B3-202ENST00000562722 MIS18AQ9NYP9 233 aa17.24■□□□□ 0.35
SF3B3-202ENST00000562722 LTBP3Q9NS15 1303 aa17.23■□□□□ 0.35
SF3B3-202ENST00000562722 CCDC88AQ3V6T2 1871 aa17.23■□□□□ 0.35
SF3B3-202ENST00000562722 NBPF26B4DH59 902 aa17.23■□□□□ 0.35
SF3B3-202ENST00000562722 GTF2E1P29083 439 aaPredicted RBP17.23■□□□□ 0.35
SF3B3-202ENST00000562722 NBPF10Q6P3W6 841 aaKnown RBP17.23■□□□□ 0.35
SF3B3-202ENST00000562722 TPTE2Q6XPS3 522 aa17.23■□□□□ 0.35
SF3B3-202ENST00000562722 NBPF15Q8N660 670 aa17.23■□□□□ 0.35
SF3B3-202ENST00000562722 JMYQ8N9B5 988 aa17.23■□□□□ 0.35
SF3B3-202ENST00000562722 NPR1P16066 1061 aa17.22■□□□□ 0.35
SF3B3-202ENST00000562722 NGEFQ8N5V2 710 aa17.22■□□□□ 0.35
SF3B3-202ENST00000562722 POTECB2RU33 542 aa17.21■□□□□ 0.35
SF3B3-202ENST00000562722 CCDC93Q567U6 631 aa17.21■□□□□ 0.35
SF3B3-202ENST00000562722 SLX4Q8IY92 1834 aa17.21■□□□□ 0.35
SF3B3-202ENST00000562722 CACNA1SQ13698 1873 aa17.2■□□□□ 0.34
SF3B3-202ENST00000562722 FER1L6Q2WGJ9 1857 aa17.2■□□□□ 0.34
SF3B3-202ENST00000562722 DDNO94850 711 aaPredicted RBP17.2■□□□□ 0.34
SF3B3-202ENST00000562722 PNISRQ8TF01 805 aaKnown RBP17.2■□□□□ 0.34
SF3B3-202ENST00000562722 HLFQ16534 295 aa17.19■□□□□ 0.34
SF3B3-202ENST00000562722 RGL2O15211 777 aa17.18■□□□□ 0.34
SF3B3-202ENST00000562722 CHADLQ6NUI6 762 aa17.18■□□□□ 0.34
SF3B3-202ENST00000562722 KIF6Q6ZMV9 814 aa17.18■□□□□ 0.34
SF3B3-202ENST00000562722 MAPK8IP3Q9UPT6 1336 aa17.18■□□□□ 0.34
SF3B3-202ENST00000562722 FKBP4Q02790 459 aaKnown RBP eCLIP17.17■□□□□ 0.34
SF3B3-202ENST00000562722 ZNF277Q9NRM2 450 aaPredicted RBP17.17■□□□□ 0.34
SF3B3-202ENST00000562722 RRP7AQ9Y3A4 280 aaKnown RBP17.17■□□□□ 0.34
SF3B3-202ENST00000562722 ARFGEF2Q9Y6D5 1785 aa17.17■□□□□ 0.34
SF3B3-202ENST00000562722 DICER1Q9UPY3 1922 aaKnown RBP17.16■□□□□ 0.34
SF3B3-202ENST00000562722 KLRG2A4D1S0 409 aaPredicted RBP17.16■□□□□ 0.34
SF3B3-202ENST00000562722 IQCA1LA6NCM1 817 aa17.16■□□□□ 0.34
SF3B3-202ENST00000562722 MYL6BP14649 208 aa17.16■□□□□ 0.34
SF3B3-202ENST00000562722 ALDH1B1P30837 517 aa17.16■□□□□ 0.34
SF3B3-202ENST00000562722 NFE2L2Q16236 605 aa17.16■□□□□ 0.34
SF3B3-202ENST00000562722 COL13A1Q5TAT6 717 aaPredicted RBP17.16■□□□□ 0.34
SF3B3-202ENST00000562722 OLFM4Q6UX06 510 aa17.16■□□□□ 0.34
SF3B3-202ENST00000562722 RTKN2Q8IZC4 609 aa17.16■□□□□ 0.34
SF3B3-202ENST00000562722 C7orf43Q8WVR3 580 aa17.16■□□□□ 0.34
SF3B3-202ENST00000562722 THUMPD2Q9BTF0 503 aaKnown RBP17.16■□□□□ 0.34
SF3B3-202ENST00000562722 NYXQ9GZU5 481 aa17.16■□□□□ 0.34
SF3B3-202ENST00000562722 LAMB4A4D0S4 1761 aa17.15■□□□□ 0.34
SF3B3-202ENST00000562722 POTEIP0CG38 1075 aa17.15■□□□□ 0.34
SF3B3-202ENST00000562722 POTEJP0CG39 1038 aa17.15■□□□□ 0.34
SF3B3-202ENST00000562722 NUTM1Q86Y26 1132 aa17.15■□□□□ 0.34
SF3B3-202ENST00000562722 PNNQ9H307 717 aaKnown RBP17.15■□□□□ 0.34
SF3B3-202ENST00000562722 EIF4A1P60842 406 aaKnown RBP17.14■□□□□ 0.33
SF3B3-202ENST00000562722 PLEKHF1Q96S99 279 aa17.14■□□□□ 0.33
SF3B3-202ENST00000562722 ZBTB3Q9H5J0 574 aa17.14■□□□□ 0.33
SF3B3-202ENST00000562722 MAP3K15Q6ZN16 1313 aa17.14■□□□□ 0.33
SF3B3-202ENST00000562722 ERVV-1B6SEH8 477 aa17.13■□□□□ 0.33
SF3B3-202ENST00000562722 HSPA1AP0DMV8 641 aaKnown RBP17.13■□□□□ 0.33
SF3B3-202ENST00000562722 HSPA1BP0DMV9 641 aaKnown RBP17.13■□□□□ 0.33
SF3B3-202ENST00000562722 GPTP24298 496 aa17.13■□□□□ 0.33
SF3B3-202ENST00000562722 EAPPQ56P03 285 aaPredicted RBP17.13■□□□□ 0.33
SF3B3-202ENST00000562722 TTLL7Q6ZT98 887 aa17.13■□□□□ 0.33
SF3B3-202ENST00000562722 RPGRQ92834 1020 aaKnown RBP17.13■□□□□ 0.33
SF3B3-202ENST00000562722 ZNF541Q9H0D2 1346 aa17.13■□□□□ 0.33
SF3B3-202ENST00000562722 ABCC12Q96J65 1359 aa17.13■□□□□ 0.33
SF3B3-202ENST00000562722 LDHDQ86WU2 507 aa17.12■□□□□ 0.33
SF3B3-202ENST00000562722 TNS4Q8IZW8 715 aa17.12■□□□□ 0.33
SF3B3-202ENST00000562722 SYNE4Q8N205 404 aa17.12■□□□□ 0.33
SF3B3-202ENST00000562722 TAF1DQ9H5J8 278 aaPredicted RBP17.12■□□□□ 0.33
SF3B3-202ENST00000562722 CREBZFQ9NS37 354 aa17.12■□□□□ 0.33
SF3B3-202ENST00000562722 MKRN1Q9UHC7 482 aaKnown RBP17.12■□□□□ 0.33
SF3B3-202ENST00000562722 KDM3BQ7LBC6 1761 aa17.12■□□□□ 0.33
SF3B3-202ENST00000562722 CAPN15O75808 1086 aa17.11■□□□□ 0.33
SF3B3-202ENST00000562722 IARSP41252 1262 aaKnown RBP17.11■□□□□ 0.33
SF3B3-202ENST00000562722 L3MBTL3Q96JM7 780 aaPredicted RBP17.11■□□□□ 0.33
SF3B3-202ENST00000562722 TSPYL4Q9UJ04 414 aa17.11■□□□□ 0.33
SF3B3-202ENST00000562722 HACL1Q9UJ83 578 aa17.11■□□□□ 0.33
SF3B3-202ENST00000562722 CLEC11AQ9Y240 323 aa17.11■□□□□ 0.33
SF3B3-202ENST00000562722 DLG5Q8TDM6 1919 aa17.1■□□□□ 0.33
SF3B3-202ENST00000562722 JDP2Q8WYK2 163 aa17.1■□□□□ 0.33
SF3B3-202ENST00000562722 CRY2Q49AN0 593 aa17.09■□□□□ 0.33
SF3B3-202ENST00000562722 RNF123Q5XPI4 1314 aa17.08■□□□□ 0.32
SF3B3-202ENST00000562722 UBN2Q6ZU65 1347 aa17.08■□□□□ 0.32
SF3B3-202ENST00000562722 TCERG1O14776 1098 aaKnown RBP17.08■□□□□ 0.32
SF3B3-202ENST00000562722 EIF2S2P20042 333 aaKnown RBP17.08■□□□□ 0.32
SF3B3-202ENST00000562722 EPHX2P34913 555 aa17.08■□□□□ 0.32
SF3B3-202ENST00000562722 SUSD4Q5VX71 490 aa17.08■□□□□ 0.32
SF3B3-202ENST00000562722 RBM17Q96I25 401 aaKnown RBP17.08■□□□□ 0.32
SF3B3-202ENST00000562722 IBTKQ9P2D0 1353 aaPredicted RBP17.07■□□□□ 0.32
SF3B3-202ENST00000562722 ERBB4Q15303 1308 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms