RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ATP10DQ9P241 1426 aa16.76■□□□□ 0.27
NEDD8-208ENST00000560427 CARMIL3Q8ND23 1372 aa16.76■□□□□ 0.27
NEDD8-208ENST00000560427 POLRMTO00411 1230 aaKnown RBP16.75■□□□□ 0.27
NEDD8-208ENST00000560427 DDR1Q08345 913 aa16.75■□□□□ 0.27
NEDD8-208ENST00000560427 SLFN5Q08AF3 891 aa16.75■□□□□ 0.27
NEDD8-208ENST00000560427 PROSER3Q2NL68 480 aa16.75■□□□□ 0.27
NEDD8-208ENST00000560427 TSPYL6Q8N831 410 aa16.75■□□□□ 0.27
NEDD8-208ENST00000560427 NECTIN2Q92692 538 aa16.75■□□□□ 0.27
NEDD8-208ENST00000560427 C10orf71Q711Q0 1435 aa16.75■□□□□ 0.27
NEDD8-208ENST00000560427 NRXN2Q9P2S2 1712 aa16.74■□□□□ 0.27
NEDD8-208ENST00000560427 HNRNPUQ00839 825 aaKnown RBP eCLIP16.74■□□□□ 0.27
NEDD8-208ENST00000560427 EXOSC9Q06265 439 aaKnown RBP16.74■□□□□ 0.27
NEDD8-208ENST00000560427 STK31Q9BXU1 1019 aa16.74■□□□□ 0.27
NEDD8-208ENST00000560427 TBC1D9BQ66K14 1250 aa16.73■□□□□ 0.27
NEDD8-208ENST00000560427 TTLL7Q6ZT98 887 aa16.73■□□□□ 0.27
NEDD8-208ENST00000560427 COPS6Q7L5N1 327 aa16.73■□□□□ 0.27
NEDD8-208ENST00000560427 SETDB2Q96T68 719 aa16.73■□□□□ 0.27
NEDD8-208ENST00000560427 SYT17Q9BSW7 474 aa16.73■□□□□ 0.27
NEDD8-208ENST00000560427 KIF13BQ9NQT8 1826 aa16.73■□□□□ 0.27
NEDD8-208ENST00000560427 VAMP4O75379 141 aa16.72■□□□□ 0.27
NEDD8-208ENST00000560427 ANXA1P04083 346 aa16.72■□□□□ 0.27
NEDD8-208ENST00000560427 HSP90AB3PQ58FF7 597 aa16.72■□□□□ 0.27
NEDD8-208ENST00000560427 GIGYF2Q6Y7W6 1299 aaKnown RBP16.72■□□□□ 0.27
NEDD8-208ENST00000560427 XAGE3Q8WTP9 111 aa16.72■□□□□ 0.27
NEDD8-208ENST00000560427 ZNF428Q96B54 188 aa16.72■□□□□ 0.27
NEDD8-208ENST00000560427 IBTKQ9P2D0 1353 aaPredicted RBP16.72■□□□□ 0.27
NEDD8-208ENST00000560427 ZBED9Q6R2W3 1325 aa16.71■□□□□ 0.27
NEDD8-208ENST00000560427 SERPINB2P05120 415 aa16.71■□□□□ 0.27
NEDD8-208ENST00000560427 TRMT2AQ8IZ69 625 aaKnown RBP16.71■□□□□ 0.27
NEDD8-208ENST00000560427 PLBD2Q8NHP8 589 aa16.71■□□□□ 0.27
NEDD8-208ENST00000560427 ZBTB3Q9H5J0 574 aa16.71■□□□□ 0.27
NEDD8-208ENST00000560427 HLFQ16534 295 aa16.7■□□□□ 0.26
NEDD8-208ENST00000560427 BICDL1Q6ZP65 573 aa16.7■□□□□ 0.26
NEDD8-208ENST00000560427 KLHL34Q8N239 644 aa16.7■□□□□ 0.26
NEDD8-208ENST00000560427 NIP7Q9Y221 180 aaKnown RBP eCLIP16.7■□□□□ 0.26
NEDD8-208ENST00000560427 DDX58O95786 925 aaKnown RBP16.69■□□□□ 0.26
NEDD8-208ENST00000560427 CT47B1P0C2W7 299 aaPredicted RBP16.69■□□□□ 0.26
NEDD8-208ENST00000560427 TGFB2P61812 414 aa16.69■□□□□ 0.26
NEDD8-208ENST00000560427 AIMP1Q12904 312 aaKnown RBP16.69■□□□□ 0.26
NEDD8-208ENST00000560427 PARP10Q53GL7 1025 aa16.68■□□□□ 0.26
NEDD8-208ENST00000560427 ANKRD13DQ6ZTN6 518 aa16.68■□□□□ 0.26
NEDD8-208ENST00000560427 CDCA7LQ96GN5 454 aa16.68■□□□□ 0.26
NEDD8-208ENST00000560427 NUP98P52948 1817 aa16.68■□□□□ 0.26
NEDD8-208ENST00000560427 RNF123Q5XPI4 1314 aa16.68■□□□□ 0.26
NEDD8-208ENST00000560427 ANKRD36CQ5JPF3 1778 aa16.67■□□□□ 0.26
NEDD8-208ENST00000560427 NBPF5PQ86XG9 351 aaPredicted RBP16.67■□□□□ 0.26
NEDD8-208ENST00000560427 ZNF34Q8IZ26 560 aa16.67■□□□□ 0.26
NEDD8-208ENST00000560427 CNBD1Q8NA66 436 aa16.67■□□□□ 0.26
NEDD8-208ENST00000560427 NYXQ9GZU5 481 aa16.67■□□□□ 0.26
NEDD8-208ENST00000560427 PDZRN3Q9UPQ7 1066 aa16.67■□□□□ 0.26
NEDD8-208ENST00000560427 AFDNP55196 1824 aaKnown RBP16.67■□□□□ 0.26
NEDD8-208ENST00000560427 PXDNLA1KZ92 1463 aa16.67■□□□□ 0.26
NEDD8-208ENST00000560427 CACNA1FO60840 1977 aa16.66■□□□□ 0.26
NEDD8-208ENST00000560427 SLC4A2P04920 1241 aa16.66■□□□□ 0.26
NEDD8-208ENST00000560427 ST5P78524 1137 aa16.66■□□□□ 0.26
NEDD8-208ENST00000560427 PRR5LQ6MZQ0 368 aa16.66■□□□□ 0.26
NEDD8-208ENST00000560427 TPTE2Q6XPS3 522 aa16.66■□□□□ 0.26
NEDD8-208ENST00000560427 PHAXQ9H814 394 aaKnown RBP16.66■□□□□ 0.26
NEDD8-208ENST00000560427 ARFGEF2Q9Y6D5 1785 aa16.65■□□□□ 0.26
NEDD8-208ENST00000560427 NPHP1O15259 732 aa16.65■□□□□ 0.26
NEDD8-208ENST00000560427 TCIRG1Q13488 830 aa16.65■□□□□ 0.26
NEDD8-208ENST00000560427 NLGN2Q8NFZ4 835 aa16.65■□□□□ 0.26
NEDD8-208ENST00000560427 BRIP1Q9BX63 1249 aa16.65■□□□□ 0.26
NEDD8-208ENST00000560427 UBN2Q6ZU65 1347 aa16.65■□□□□ 0.26
NEDD8-208ENST00000560427 KIAA1551Q9HCM1 1747 aa16.65■□□□□ 0.26
NEDD8-208ENST00000560427 RIC1Q4ADV7 1423 aa16.64■□□□□ 0.25
NEDD8-208ENST00000560427 DCAF8L1A6NGE4 600 aa16.64■□□□□ 0.25
NEDD8-208ENST00000560427 FLIIQ13045 1269 aa16.64■□□□□ 0.25
NEDD8-208ENST00000560427 PPP1R42Q7Z4L9 355 aa16.64■□□□□ 0.25
NEDD8-208ENST00000560427 RIC3Q7Z5B4 369 aa16.64■□□□□ 0.25
NEDD8-208ENST00000560427 PDE6BP35913 854 aa16.63■□□□□ 0.25
NEDD8-208ENST00000560427 TRIM28Q13263 835 aaKnown RBP16.63■□□□□ 0.25
NEDD8-208ENST00000560427 ALDH1L2Q3SY69 923 aa16.63■□□□□ 0.25
NEDD8-208ENST00000560427 KSR2Q6VAB6 950 aa16.63■□□□□ 0.25
NEDD8-208ENST00000560427 TCERG1O14776 1098 aaKnown RBP16.62■□□□□ 0.25
NEDD8-208ENST00000560427 GPTP24298 496 aa16.62■□□□□ 0.25
NEDD8-208ENST00000560427 NLRP10Q86W26 655 aa16.62■□□□□ 0.25
NEDD8-208ENST00000560427 ISCA1Q9BUE6 129 aa16.62■□□□□ 0.25
NEDD8-208ENST00000560427 NTSR2O95665 410 aa16.61■□□□□ 0.25
NEDD8-208ENST00000560427 GTF2E1P29083 439 aaPredicted RBP16.61■□□□□ 0.25
NEDD8-208ENST00000560427 SUSD4Q5VX71 490 aa16.61■□□□□ 0.25
NEDD8-208ENST00000560427 METTL22Q9BUU2 404 aaPredicted RBP16.61■□□□□ 0.25
NEDD8-208ENST00000560427 UTP14AQ9BVJ6 771 aaKnown RBP16.61■□□□□ 0.25
NEDD8-208ENST00000560427 ADCY9O60503 1353 aa16.61■□□□□ 0.25
NEDD8-208ENST00000560427 DLEC1Q9Y238 1755 aa16.6■□□□□ 0.25
NEDD8-208ENST00000560427 PI4KAP2A4QPH2 592 aa16.6■□□□□ 0.25
NEDD8-208ENST00000560427 NEXNQ0ZGT2 675 aa16.6■□□□□ 0.25
NEDD8-208ENST00000560427 FKBP5Q13451 457 aaPredicted RBP16.6■□□□□ 0.25
NEDD8-208ENST00000560427 PI4KAP1Q8N8J0 262 aa16.6■□□□□ 0.25
NEDD8-208ENST00000560427 MAP3K2Q9Y2U5 619 aa16.6■□□□□ 0.25
NEDD8-208ENST00000560427 ANKRD31Q8N7Z5 1873 aa16.59■□□□□ 0.25
NEDD8-208ENST00000560427 H0YIN7 160 aa16.59■□□□□ 0.25
NEDD8-208ENST00000560427 DPEP1P16444 411 aa16.59■□□□□ 0.25
NEDD8-208ENST00000560427 G2E3Q7L622 706 aa16.59■□□□□ 0.25
NEDD8-208ENST00000560427 CCDC191Q8NCU4 936 aa16.59■□□□□ 0.25
NEDD8-208ENST00000560427 PTPRCP08575 1304 aa16.59■□□□□ 0.25
NEDD8-208ENST00000560427 A0A0G2JLW4 131 aa16.58■□□□□ 0.24
NEDD8-208ENST00000560427 KLRG2A4D1S0 409 aaPredicted RBP16.58■□□□□ 0.24
NEDD8-208ENST00000560427 FAM177BA6PVY3 158 aa16.58■□□□□ 0.24
NEDD8-208ENST00000560427 BRPF1P55201 1214 aaPredicted RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms