RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 KLRG1Q96E93 195 aa17.5■□□□□ 0.39
TPM1-220ENST00000559556 USP16Q9Y5T5 823 aa17.5■□□□□ 0.39
TPM1-220ENST00000559556 ADAMTSL1Q8N6G6 1762 aa17.49■□□□□ 0.39
TPM1-220ENST00000559556 U2AF1L5P0DN76 240 aaPredicted RBP17.49■□□□□ 0.39
TPM1-220ENST00000559556 HTRA3P83110 453 aa17.49■□□□□ 0.39
TPM1-220ENST00000559556 U2AF1Q01081 240 aaKnown RBP eCLIP17.49■□□□□ 0.396e-9■■■■□ 21.7
TPM1-220ENST00000559556 MCM10Q7L590 875 aa17.49■□□□□ 0.39
TPM1-220ENST00000559556 CCDC24Q8N4L8 307 aa17.49■□□□□ 0.39
TPM1-220ENST00000559556 JMYQ8N9B5 988 aa17.49■□□□□ 0.39
TPM1-220ENST00000559556 RTF1Q92541 710 aaKnown RBP17.49■□□□□ 0.39
TPM1-220ENST00000559556 TRPM7Q96QT4 1865 aa17.49■□□□□ 0.39
TPM1-220ENST00000559556 PRAMEF22A3QJZ6 481 aa17.48■□□□□ 0.39
TPM1-220ENST00000559556 C21orf2O43822 256 aa17.48■□□□□ 0.39
TPM1-220ENST00000559556 SNRPA1P09661 255 aaKnown RBP17.48■□□□□ 0.39
TPM1-220ENST00000559556 ST5P78524 1137 aa17.48■□□□□ 0.39
TPM1-220ENST00000559556 STYK1Q6J9G0 422 aa17.48■□□□□ 0.39
TPM1-220ENST00000559556 CLEC4GQ6UXB4 293 aa17.48■□□□□ 0.39
TPM1-220ENST00000559556 RGL2O15211 777 aa17.47■□□□□ 0.39
TPM1-220ENST00000559556 HTATSF1O43719 755 aaKnown RBP17.47■□□□□ 0.39
TPM1-220ENST00000559556 SRGNP10124 158 aa17.47■□□□□ 0.39
TPM1-220ENST00000559556 PIP4K2AP48426 406 aaPredicted RBP17.47■□□□□ 0.39
TPM1-220ENST00000559556 CNKSR1Q969H4 720 aa17.47■□□□□ 0.39
TPM1-220ENST00000559556 POTECB2RU33 542 aa17.46■□□□□ 0.39
TPM1-220ENST00000559556 NPHP1O15259 732 aa17.46■□□□□ 0.39
TPM1-220ENST00000559556 PRPF40BQ6NWY9 871 aaKnown RBP17.46■□□□□ 0.39
TPM1-220ENST00000559556 ZNF219Q9P2Y4 722 aaPredicted RBP17.46■□□□□ 0.39
TPM1-220ENST00000559556 ZNF652Q9Y2D9 606 aa17.46■□□□□ 0.39
TPM1-220ENST00000559556 DCTN1Q14203 1278 aa17.45■□□□□ 0.38
TPM1-220ENST00000559556 ERFEQ4G0M1 354 aa17.45■□□□□ 0.38
TPM1-220ENST00000559556 SOGA3Q5TF21 947 aa17.45■□□□□ 0.38
TPM1-220ENST00000559556 MASTLQ96GX5 879 aa17.45■□□□□ 0.38
TPM1-220ENST00000559556 TAOK3Q9H2K8 898 aa17.45■□□□□ 0.38
TPM1-220ENST00000559556 TAF1P21675 1872 aa17.45■□□□□ 0.38
TPM1-220ENST00000559556 NBPF26B4DH59 902 aa17.44■□□□□ 0.38
TPM1-220ENST00000559556 DPY19L2Q6NUT2 758 aa17.44■□□□□ 0.38
TPM1-220ENST00000559556 NBPF10Q6P3W6 841 aaKnown RBP17.44■□□□□ 0.38
TPM1-220ENST00000559556 NBPF5PQ86XG9 351 aaPredicted RBP17.44■□□□□ 0.38
TPM1-220ENST00000559556 NBPF15Q8N660 670 aa17.44■□□□□ 0.38
TPM1-220ENST00000559556 KLRG2A4D1S0 409 aaPredicted RBP17.42■□□□□ 0.38
TPM1-220ENST00000559556 TAF7Q15545 349 aaPredicted RBP17.42■□□□□ 0.38
TPM1-220ENST00000559556 RIC1Q4ADV7 1423 aa17.41■□□□□ 0.38
TPM1-220ENST00000559556 NPR1P16066 1061 aa17.41■□□□□ 0.38
TPM1-220ENST00000559556 C7orf43Q8WVR3 580 aa17.41■□□□□ 0.38
TPM1-220ENST00000559556 NIP7Q9Y221 180 aaKnown RBP eCLIP17.41■□□□□ 0.38
TPM1-220ENST00000559556 SNED1Q8TER0 1413 aa17.4■□□□□ 0.38
TPM1-220ENST00000559556 CCDC93Q567U6 631 aa17.39■□□□□ 0.37
TPM1-220ENST00000559556 TPTE2Q6XPS3 522 aa17.39■□□□□ 0.37
TPM1-220ENST00000559556 IBTKQ9P2D0 1353 aaPredicted RBP17.38■□□□□ 0.37
TPM1-220ENST00000559556 LTBP1Q14766 1721 aa17.38■□□□□ 0.37
TPM1-220ENST00000559556 DDX60Q8IY21 1712 aaKnown RBP17.38■□□□□ 0.37
TPM1-220ENST00000559556 DDNO94850 711 aaPredicted RBP17.37■□□□□ 0.37
TPM1-220ENST00000559556 NEFMP07197 916 aa17.37■□□□□ 0.37
TPM1-220ENST00000559556 HLFQ16534 295 aa17.37■□□□□ 0.37
TPM1-220ENST00000559556 PNISRQ8TF01 805 aaKnown RBP17.37■□□□□ 0.37
TPM1-220ENST00000559556 PLEKHF1Q96S99 279 aa17.37■□□□□ 0.37
TPM1-220ENST00000559556 MIS18AQ9NYP9 233 aa17.37■□□□□ 0.37
TPM1-220ENST00000559556 ABCC12Q96J65 1359 aa17.37■□□□□ 0.37
TPM1-220ENST00000559556 POLR2AP24928 1970 aaKnown RBP17.37■□□□□ 0.37
TPM1-220ENST00000559556 FKBP4Q02790 459 aaKnown RBP eCLIP17.36■□□□□ 0.37
TPM1-220ENST00000559556 L3MBTL3Q96JM7 780 aaPredicted RBP17.36■□□□□ 0.37
TPM1-220ENST00000559556 COL4A5P29400 1685 aa17.36■□□□□ 0.37
TPM1-220ENST00000559556 ERVV-1B6SEH8 477 aa17.35■□□□□ 0.37
TPM1-220ENST00000559556 NFE2L2Q16236 605 aa17.35■□□□□ 0.37
TPM1-220ENST00000559556 CHADLQ6NUI6 762 aa17.35■□□□□ 0.37
TPM1-220ENST00000559556 MAP3K15Q6ZN16 1313 aa17.35■□□□□ 0.37
TPM1-220ENST00000559556 LRRC37AA6NMS7 1700 aa17.35■□□□□ 0.37
TPM1-220ENST00000559556 IQCA1LA6NCM1 817 aa17.34■□□□□ 0.37
TPM1-220ENST00000559556 POTEIP0CG38 1075 aa17.34■□□□□ 0.37
TPM1-220ENST00000559556 POTEJP0CG39 1038 aa17.34■□□□□ 0.37
TPM1-220ENST00000559556 EIF4A1P60842 406 aaKnown RBP17.34■□□□□ 0.37
TPM1-220ENST00000559556 CRY2Q49AN0 593 aa17.34■□□□□ 0.37
TPM1-220ENST00000559556 NYXQ9GZU5 481 aa17.34■□□□□ 0.37
TPM1-220ENST00000559556 FAM177BA6PVY3 158 aa17.33■□□□□ 0.36
TPM1-220ENST00000559556 ALDH1B1P30837 517 aa17.33■□□□□ 0.36
TPM1-220ENST00000559556 COL13A1Q5TAT6 717 aaPredicted RBP17.33■□□□□ 0.36
TPM1-220ENST00000559556 OLFM4Q6UX06 510 aa17.33■□□□□ 0.36
TPM1-220ENST00000559556 RTKN2Q8IZC4 609 aa17.33■□□□□ 0.36
TPM1-220ENST00000559556 ERBB4Q15303 1308 aa17.32■□□□□ 0.36
TPM1-220ENST00000559556 ZNF541Q9H0D2 1346 aa17.32■□□□□ 0.36
TPM1-220ENST00000559556 ZNF277Q9NRM2 450 aaPredicted RBP17.32■□□□□ 0.36
TPM1-220ENST00000559556 CREBZFQ9NS37 354 aa17.32■□□□□ 0.36
TPM1-220ENST00000559556 THSD7BQ9C0I4 1608 aa17.32■□□□□ 0.36
TPM1-220ENST00000559556 UBN2Q6ZU65 1347 aa17.31■□□□□ 0.36
TPM1-220ENST00000559556 MAPK8IP3Q9UPT6 1336 aa17.31■□□□□ 0.36
TPM1-220ENST00000559556 GTF2E1P29083 439 aaPredicted RBP17.31■□□□□ 0.36
TPM1-220ENST00000559556 KIF6Q6ZMV9 814 aa17.31■□□□□ 0.36
TPM1-220ENST00000559556 TTLL7Q6ZT98 887 aa17.31■□□□□ 0.36
TPM1-220ENST00000559556 LDHDQ86WU2 507 aa17.31■□□□□ 0.36
TPM1-220ENST00000559556 THUMPD2Q9BTF0 503 aaKnown RBP17.31■□□□□ 0.36
TPM1-220ENST00000559556 PNNQ9H307 717 aaKnown RBP17.31■□□□□ 0.36
TPM1-220ENST00000559556 TAF1DQ9H5J8 278 aaPredicted RBP17.31■□□□□ 0.36
TPM1-220ENST00000559556 MYH3P11055 1940 aa17.31■□□□□ 0.36
TPM1-220ENST00000559556 PASKQ96RG2 1323 aa17.3■□□□□ 0.36
TPM1-220ENST00000559556 HSPA1AP0DMV8 641 aaKnown RBP17.3■□□□□ 0.36
TPM1-220ENST00000559556 HSPA1BP0DMV9 641 aaKnown RBP17.3■□□□□ 0.36
TPM1-220ENST00000559556 IARSP41252 1262 aaKnown RBP17.3■□□□□ 0.36
TPM1-220ENST00000559556 NUTM1Q86Y26 1132 aa17.3■□□□□ 0.36
TPM1-220ENST00000559556 NGEFQ8N5V2 710 aa17.3■□□□□ 0.36
TPM1-220ENST00000559556 PSMD1Q99460 953 aa17.3■□□□□ 0.36
TPM1-220ENST00000559556 RRP7AQ9Y3A4 280 aaKnown RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms