RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SMC2O95347 1197 aa18.53■□□□□ 0.56
CUX1-211ENST00000546411 HCLS1P14317 486 aaPredicted RBP18.53■□□□□ 0.56
CUX1-211ENST00000546411 TMEM2Q9UHN6 1383 aa18.53■□□□□ 0.56
CUX1-211ENST00000546411 MARCH6O60337 910 aa18.53■□□□□ 0.56
CUX1-211ENST00000546411 SIRT2Q8IXJ6 389 aa18.53■□□□□ 0.56
CUX1-211ENST00000546411 NUP133Q8WUM0 1156 aa18.53■□□□□ 0.56
CUX1-211ENST00000546411 ABCF2Q9UG63 623 aa18.53■□□□□ 0.56
CUX1-211ENST00000546411 GIMAP6Q6P9H5 292 aa18.52■□□□□ 0.56
CUX1-211ENST00000546411 CD2BP2O95400 341 aaKnown RBP18.52■□□□□ 0.56
CUX1-211ENST00000546411 LINS1Q8NG48 757 aa18.52■□□□□ 0.56
CUX1-211ENST00000546411 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.52■□□□□ 0.568e-7■■■□□ 15.1
CUX1-211ENST00000546411 NEO1Q92859 1461 aa18.51■□□□□ 0.55
CUX1-211ENST00000546411 AK2P54819 239 aa18.51■□□□□ 0.55
CUX1-211ENST00000546411 SH2B1Q9NRF2 756 aaPredicted RBP18.51■□□□□ 0.55
CUX1-211ENST00000546411 NDUFB9Q9Y6M9 179 aa18.51■□□□□ 0.55
CUX1-211ENST00000546411 HSPA2P54652 639 aa18.51■□□□□ 0.55
CUX1-211ENST00000546411 ZNF396Q96N95 335 aaPredicted RBP18.51■□□□□ 0.55
CUX1-211ENST00000546411 SBNO1A3KN83 1393 aa18.51■□□□□ 0.55
CUX1-211ENST00000546411 MLH3Q9UHC1 1453 aa18.51■□□□□ 0.55
CUX1-211ENST00000546411 MAP3K11Q16584 847 aa18.5■□□□□ 0.55
CUX1-211ENST00000546411 ADAMTS2O95450 1211 aa18.5■□□□□ 0.55
CUX1-211ENST00000546411 PKP1Q13835 747 aa18.5■□□□□ 0.55
CUX1-211ENST00000546411 USP48Q86UV5 1035 aa18.5■□□□□ 0.55
CUX1-211ENST00000546411 PIBF1Q8WXW3 757 aa18.5■□□□□ 0.55
CUX1-211ENST00000546411 BRF1Q92994 677 aa18.5■□□□□ 0.55
CUX1-211ENST00000546411 BICC1Q9H694 974 aaKnown RBP18.5■□□□□ 0.55
CUX1-211ENST00000546411 RNMTO43148 476 aaKnown RBP18.5■□□□□ 0.55
CUX1-211ENST00000546411 STARD3NLO95772 234 aa18.5■□□□□ 0.55
CUX1-211ENST00000546411 IFIT5Q13325 482 aaKnown RBP18.5■□□□□ 0.55
CUX1-211ENST00000546411 VPS53Q5VIR6 699 aa18.5■□□□□ 0.55
CUX1-211ENST00000546411 NMIQ13287 307 aaPredicted RBP18.5■□□□□ 0.55
CUX1-211ENST00000546411 CCDC183Q5T5S1 534 aa18.5■□□□□ 0.55
CUX1-211ENST00000546411 USP44Q9H0E7 712 aa18.5■□□□□ 0.55
CUX1-211ENST00000546411 PDILTQ8N807 584 aa18.49■□□□□ 0.55
CUX1-211ENST00000546411 U3KPZ7 1027 aaPredicted RBP18.49■□□□□ 0.55
CUX1-211ENST00000546411 DNM1Q05193 864 aaKnown RBP18.49■□□□□ 0.55
CUX1-211ENST00000546411 SART3Q15020 963 aaKnown RBP18.49■□□□□ 0.55
CUX1-211ENST00000546411 TRMT112Q9UI30 125 aaKnown RBP18.49■□□□□ 0.55
CUX1-211ENST00000546411 PLXNC1O60486 1568 aa18.49■□□□□ 0.55
CUX1-211ENST00000546411 ZNF830Q96NB3 372 aaPredicted RBP18.48■□□□□ 0.55
CUX1-211ENST00000546411 TMX4Q9H1E5 349 aaPredicted RBP18.48■□□□□ 0.55
CUX1-211ENST00000546411 RTL1A6NKG5 1358 aa18.48■□□□□ 0.55
CUX1-211ENST00000546411 IMMTQ16891 758 aaKnown RBP18.48■□□□□ 0.55
CUX1-211ENST00000546411 CFAP45Q9UL16 551 aa18.48■□□□□ 0.55
CUX1-211ENST00000546411 ROBO2Q9HCK4 1378 aa18.48■□□□□ 0.55
CUX1-211ENST00000546411 LDHAL6AQ6ZMR3 332 aa18.48■□□□□ 0.55
CUX1-211ENST00000546411 NAT10Q9H0A0 1025 aaKnown RBP18.48■□□□□ 0.55
CUX1-211ENST00000546411 ALDH1L1O75891 902 aa18.47■□□□□ 0.55
CUX1-211ENST00000546411 TDO2P48775 406 aa18.47■□□□□ 0.55
CUX1-211ENST00000546411 NCBP3Q53F19 620 aaKnown RBP18.47■□□□□ 0.55
CUX1-211ENST00000546411 CHST3Q7LGC8 479 aa18.47■□□□□ 0.55
CUX1-211ENST00000546411 ZSCAN22P10073 491 aaPredicted RBP18.47■□□□□ 0.55
CUX1-211ENST00000546411 NEK1Q96PY6 1258 aa18.47■□□□□ 0.55
CUX1-211ENST00000546411 CWC25Q9NXE8 425 aaPredicted RBP18.47■□□□□ 0.55
CUX1-211ENST00000546411 LRP2BPQ9P2M1 347 aa18.47■□□□□ 0.55
CUX1-211ENST00000546411 CROCC2H7BZ55 1655 aa18.47■□□□□ 0.55
CUX1-211ENST00000546411 CLSTN1O94985 981 aa18.47■□□□□ 0.55
CUX1-211ENST00000546411 UBE2Q2Q8WVN8 375 aa18.47■□□□□ 0.55
CUX1-211ENST00000546411 CTNNA3Q9UI47 895 aa18.47■□□□□ 0.55
CUX1-211ENST00000546411 NOL10Q9BSC4 688 aaKnown RBP18.47■□□□□ 0.55
CUX1-211ENST00000546411 ANAPC15P60006 121 aa18.46■□□□□ 0.55
CUX1-211ENST00000546411 HSP90AB3PQ58FF7 597 aa18.46■□□□□ 0.55
CUX1-211ENST00000546411 AIDAQ96BJ3 306 aa18.46■□□□□ 0.55
CUX1-211ENST00000546411 KIF1BO60333 1816 aa18.46■□□□□ 0.55
CUX1-211ENST00000546411 CCDC144CPQ8IYA2 1237 aa18.46■□□□□ 0.55
CUX1-211ENST00000546411 UQCRHLA0A096LP55 91 aa18.46■□□□□ 0.55
CUX1-211ENST00000546411 UQCRHP07919 91 aa18.46■□□□□ 0.55
CUX1-211ENST00000546411 FAM173BQ6P4H8 233 aa18.46■□□□□ 0.55
CUX1-211ENST00000546411 PALD1Q9ULE6 856 aa18.45■□□□□ 0.54
CUX1-211ENST00000546411 EFCAB6Q5THR3 1501 aa18.45■□□□□ 0.54
CUX1-211ENST00000546411 SCAND2PQ9GZW5 306 aaPredicted RBP18.45■□□□□ 0.54
CUX1-211ENST00000546411 UNC13BO14795 1591 aa18.45■□□□□ 0.54
CUX1-211ENST00000546411 PIP4K2BP78356 416 aa18.45■□□□□ 0.54
CUX1-211ENST00000546411 CADPS2Q86UW7 1296 aa18.45■□□□□ 0.54
CUX1-211ENST00000546411 PHF23Q9BUL5 403 aaPredicted RBP18.45■□□□□ 0.54
CUX1-211ENST00000546411 POLR3DP05423 398 aaPredicted RBP18.44■□□□□ 0.54
CUX1-211ENST00000546411 BRPF1P55201 1214 aaPredicted RBP18.44■□□□□ 0.54
CUX1-211ENST00000546411 EDC3Q96F86 508 aaKnown RBP18.44■□□□□ 0.54
CUX1-211ENST00000546411 FAM227BQ96M60 508 aa18.44■□□□□ 0.54
CUX1-211ENST00000546411 RAI14Q9P0K7 980 aa18.44■□□□□ 0.54
CUX1-211ENST00000546411 TET3O43151 1660 aa18.44■□□□□ 0.54
CUX1-211ENST00000546411 TIMM10P62072 90 aa18.44■□□□□ 0.54
CUX1-211ENST00000546411 TFCP2Q12800 502 aa18.44■□□□□ 0.54
CUX1-211ENST00000546411 MAP3K4Q9Y6R4 1608 aa18.44■□□□□ 0.54
CUX1-211ENST00000546411 EIF4A1P60842 406 aaKnown RBP18.44■□□□□ 0.54
CUX1-211ENST00000546411 CCDC69A6NI79 296 aa18.43■□□□□ 0.54
CUX1-211ENST00000546411 MINDY4BA8MYZ0 360 aa18.43■□□□□ 0.54
CUX1-211ENST00000546411 ZNF790Q6PG37 636 aa18.43■□□□□ 0.54
CUX1-211ENST00000546411 DDX21Q9NR30 783 aaKnown RBP eCLIP18.43■□□□□ 0.54
CUX1-211ENST00000546411 HOOK1Q9UJC3 728 aaKnown RBP18.43■□□□□ 0.54
CUX1-211ENST00000546411 TPM3P06753 285 aa18.43■□□□□ 0.54
CUX1-211ENST00000546411 SAMD1Q6SPF0 538 aaPredicted RBP18.43■□□□□ 0.54
CUX1-211ENST00000546411 LRSAM1Q6UWE0 723 aa18.43■□□□□ 0.54
CUX1-211ENST00000546411 OLFM4Q6UX06 510 aa18.43■□□□□ 0.54
CUX1-211ENST00000546411 ZCRB1Q8TBF4 217 aaKnown RBP18.43■□□□□ 0.54
CUX1-211ENST00000546411 RRAGDQ9NQL2 400 aaPredicted RBP18.43■□□□□ 0.54
CUX1-211ENST00000546411 ABCC3O15438 1527 aa18.43■□□□□ 0.54
CUX1-211ENST00000546411 ADCY5O95622 1261 aa18.43■□□□□ 0.54
CUX1-211ENST00000546411 ZNF853P0CG23 659 aa18.43■□□□□ 0.54
CUX1-211ENST00000546411 AMOTL1Q8IY63 956 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms