RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NUTM2BA6NNL0 878 aaPredicted RBP6.46□□□□□ -1.38
USP28-213ENST00000544967 NUTM2EB1AL46 878 aaPredicted RBP6.46□□□□□ -1.38
USP28-213ENST00000544967 CT47B1P0C2W7 299 aaPredicted RBP6.46□□□□□ -1.38
USP28-213ENST00000544967 AMOTQ4VCS5 1084 aa6.46□□□□□ -1.38
USP28-213ENST00000544967 NUTM2AQ8IVF1 878 aaPredicted RBP6.46□□□□□ -1.38
USP28-213ENST00000544967 UQCRHLA0A096LP55 91 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 MAFGO15525 162 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 SEC24BO95487 1268 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 IGHDP01880 384 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 UQCRHP07919 91 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 SETQ01105 290 aaPredicted RBP6.45□□□□□ -1.38
USP28-213ENST00000544967 CNGB1Q14028 1251 aaPredicted RBP6.45□□□□□ -1.38
USP28-213ENST00000544967 CREBRFQ8IUR6 639 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 C22orf23Q9BZE7 217 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 RWDD1Q9H446 243 aaPredicted RBP6.45□□□□□ -1.38
USP28-213ENST00000544967 CCDC39Q9UFE4 941 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 DIAPH1O60610 1272 aaKnown RBP6.45□□□□□ -1.38
USP28-213ENST00000544967 SEPT12Q8IYM1 358 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 MYRIPQ8NFW9 859 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 AMPHP49418 695 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 LMOD2Q6P5Q4 547 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 EP400Q96L91 3159 aa6.45□□□□□ -1.38
USP28-213ENST00000544967 MAP3K5Q99683 1374 aa6.44□□□□□ -1.38
USP28-213ENST00000544967 CANXP27824 592 aaKnown RBP6.44□□□□□ -1.38
USP28-213ENST00000544967 GAS2L3Q86XJ1 694 aa6.44□□□□□ -1.38
USP28-213ENST00000544967 GPATCH11Q8N954 259 aa6.44□□□□□ -1.38
USP28-213ENST00000544967 MARCH10Q8NA82 808 aaPredicted RBP6.44□□□□□ -1.38
USP28-213ENST00000544967 BABAM1Q9NWV8 329 aa6.44□□□□□ -1.38
USP28-213ENST00000544967 FBLN1P23142 703 aa6.44□□□□□ -1.38
USP28-213ENST00000544967 SKAP1Q86WV1 359 aa6.44□□□□□ -1.38
USP28-213ENST00000544967 MYH14Q7Z406 1995 aaKnown RBP6.44□□□□□ -1.38
USP28-213ENST00000544967 LOC102724159A0A0B4J2E5 919 aa6.44□□□□□ -1.38
USP28-213ENST00000544967 PHKG2P15735 406 aa6.44□□□□□ -1.38
USP28-213ENST00000544967 HDAC1Q13547 482 aaPredicted RBP6.44□□□□□ -1.38
USP28-213ENST00000544967 WDR43Q15061 677 aaKnown RBP eCLIP6.44□□□□□ -1.38
USP28-213ENST00000544967 PWP2Q15269 919 aaKnown RBP6.44□□□□□ -1.38
USP28-213ENST00000544967 CC2D1BQ5T0F9 858 aaKnown RBP6.44□□□□□ -1.38
USP28-213ENST00000544967 ILDR2Q71H61 639 aa6.44□□□□□ -1.38
USP28-213ENST00000544967 TNPO1Q92973 898 aaKnown RBP6.44□□□□□ -1.38
USP28-213ENST00000544967 BRCA1P38398 1863 aaKnown RBP6.43□□□□□ -1.38
USP28-213ENST00000544967 CYP27B1O15528 508 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 BRD1O95696 1058 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 OS9Q13438 667 aaPredicted RBP6.43□□□□□ -1.38
USP28-213ENST00000544967 SYCP1Q15431 976 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 DNAJC2Q99543 621 aaKnown RBP6.43□□□□□ -1.38
USP28-213ENST00000544967 ERVV-2B6SEH9 535 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 PLSCR1O15162 318 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 GTF2E1P29083 439 aaPredicted RBP6.43□□□□□ -1.38
USP28-213ENST00000544967 PPP4R3BQ5MIZ7 849 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 FAM196AQ6ZSG2 479 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 KRT27Q7Z3Y8 459 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 SGSM3Q96HU1 749 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 CFAP53Q96M91 514 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 TRAIPQ9BWF2 469 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 ADAMTS8Q9UP79 889 aa6.43□□□□□ -1.38
USP28-213ENST00000544967 TOM1L2Q6ZVM7 507 aa6.42□□□□□ -1.38
USP28-213ENST00000544967 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.42□□□□□ -1.38
USP28-213ENST00000544967 MCCP23508 829 aa6.42□□□□□ -1.38
USP28-213ENST00000544967 AKAP4Q5JQC9 854 aa6.42□□□□□ -1.38
USP28-213ENST00000544967 FTSJ3Q8IY81 847 aaKnown RBP6.42□□□□□ -1.38
USP28-213ENST00000544967 FEZ1Q99689 392 aa6.42□□□□□ -1.38
USP28-213ENST00000544967 SLC24A3Q9HC58 644 aa6.42□□□□□ -1.38
USP28-213ENST00000544967 ECM2O94769 699 aaPredicted RBP6.42□□□□□ -1.38
USP28-213ENST00000544967 ZCRB1Q8TBF4 217 aaKnown RBP6.42□□□□□ -1.38
USP28-213ENST00000544967 RGL2O15211 777 aa6.41□□□□□ -1.38
USP28-213ENST00000544967 GABPB1Q06547 395 aaPredicted RBP6.41□□□□□ -1.38
USP28-213ENST00000544967 FAM98CQ17RN3 349 aaKnown RBP6.41□□□□□ -1.38
USP28-213ENST00000544967 FAM13BQ9NYF5 915 aa6.41□□□□□ -1.38
USP28-213ENST00000544967 PDZRN3Q9UPQ7 1066 aa6.41□□□□□ -1.38
USP28-213ENST00000544967 SPG7Q9UQ90 795 aa6.41□□□□□ -1.38
USP28-213ENST00000544967 R3HCC1Q9Y3T6 440 aaKnown RBP6.41□□□□□ -1.38
USP28-213ENST00000544967 NUCB2P80303 420 aa6.41□□□□□ -1.38
USP28-213ENST00000544967 MKRN3Q13064 507 aaKnown RBP6.41□□□□□ -1.38
USP28-213ENST00000544967 DDB1Q16531 1140 aa6.41□□□□□ -1.38
USP28-213ENST00000544967 DCAF5Q96JK2 942 aa6.41□□□□□ -1.38
USP28-213ENST00000544967 SMARCA5O60264 1052 aaPredicted RBP6.41□□□□□ -1.38
USP28-213ENST00000544967 TATP17735 454 aaPredicted RBP6.41□□□□□ -1.38
USP28-213ENST00000544967 EVA1CP58658 441 aa6.41□□□□□ -1.38
USP28-213ENST00000544967 WDR63Q8IWG1 891 aa6.41□□□□□ -1.38
USP28-213ENST00000544967 UPF1Q92900 1129 aaKnown RBP eCLIP6.41□□□□□ -1.38
USP28-213ENST00000544967 SOS1Q07889 1333 aaPredicted RBP6.4□□□□□ -1.38
USP28-213ENST00000544967 IL16Q14005 1332 aa6.4□□□□□ -1.38
USP28-213ENST00000544967 TMTC2Q8N394 836 aa6.4□□□□□ -1.38
USP28-213ENST00000544967 PDCL2Q8N4E4 241 aa6.4□□□□□ -1.38
USP28-213ENST00000544967 TSPYL1Q9H0U9 437 aa6.4□□□□□ -1.38
USP28-213ENST00000544967 CYP2E1P05181 493 aaPredicted RBP6.4□□□□□ -1.39
USP28-213ENST00000544967 UVSSAQ2YD98 709 aa6.4□□□□□ -1.39
USP28-213ENST00000544967 GAS2L2Q8NHY3 880 aa6.4□□□□□ -1.39
USP28-213ENST00000544967 CAMKK2Q96RR4 588 aa6.4□□□□□ -1.39
USP28-213ENST00000544967 ZNF853P0CG23 659 aa6.4□□□□□ -1.39
USP28-213ENST00000544967 HMGB2P26583 209 aaKnown RBP6.4□□□□□ -1.39
USP28-213ENST00000544967 PLEKHO1Q53GL0 409 aaPredicted RBP6.4□□□□□ -1.39
USP28-213ENST00000544967 EXOC8Q8IYI6 725 aa6.4□□□□□ -1.39
USP28-213ENST00000544967 IFNL2Q8IZJ0 200 aa6.4□□□□□ -1.39
USP28-213ENST00000544967 K7ELQ4 463 aaPredicted RBP6.39□□□□□ -1.39
USP28-213ENST00000544967 EXOC5O00471 708 aa6.39□□□□□ -1.39
USP28-213ENST00000544967 KIAA2012Q0VF49 1180 aa6.39□□□□□ -1.39
USP28-213ENST00000544967 STRN4Q9NRL3 753 aa6.39□□□□□ -1.39
USP28-213ENST00000544967 SPTLC3Q9NUV7 552 aa6.39□□□□□ -1.39
USP28-213ENST00000544967 RIPOR2Q9Y4F9 1068 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms