RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 SYTL4Q96C24 671 aaPredicted RBP6.85□□□□□ -1.31
VPS50-220ENST00000544910 LTKP29376 864 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 HMGN5P82970 282 aaKnown RBP6.85□□□□□ -1.31
VPS50-220ENST00000544910 FMNL2Q96PY5 1086 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 ADGRB2O60241 1585 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 RNMTO43148 476 aaKnown RBP6.85□□□□□ -1.31
VPS50-220ENST00000544910 AKAP17AQ02040 695 aaKnown RBP6.85□□□□□ -1.31
VPS50-220ENST00000544910 LRSAM1Q6UWE0 723 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 PHAXQ9H814 394 aaKnown RBP6.85□□□□□ -1.31
VPS50-220ENST00000544910 ERICH2A1L162 156 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 STX6O43752 255 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 DHX16O60231 1041 aaKnown RBP6.85□□□□□ -1.31
VPS50-220ENST00000544910 IFNL2Q8IZJ0 200 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 LRRC59Q96AG4 307 aaKnown RBP6.85□□□□□ -1.31
VPS50-220ENST00000544910 NUP62CLQ9H1M0 184 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 STRN4Q9NRL3 753 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 CWC15Q9P013 229 aaKnown RBP6.85□□□□□ -1.31
VPS50-220ENST00000544910 TBC1D2BQ9UPU7 963 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 PRR36Q9H6K5 1346 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.85□□□□□ -1.31
VPS50-220ENST00000544910 ANXA1P04083 346 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 CCDC57Q2TAC2 916 aa6.85□□□□□ -1.31
VPS50-220ENST00000544910 HOOK1Q9UJC3 728 aaKnown RBP6.85□□□□□ -1.31
VPS50-220ENST00000544910 HOXB7P09629 217 aa6.84□□□□□ -1.31
VPS50-220ENST00000544910 U3KPZ7 1027 aaPredicted RBP6.84□□□□□ -1.31
VPS50-220ENST00000544910 ZSCAN25Q6NSZ9 544 aa6.84□□□□□ -1.31
VPS50-220ENST00000544910 DDX54Q8TDD1 881 aaKnown RBP6.84□□□□□ -1.31
VPS50-220ENST00000544910 PANK2Q9BZ23 570 aa6.84□□□□□ -1.31
VPS50-220ENST00000544910 AGLP35573 1532 aa6.84□□□□□ -1.31
VPS50-220ENST00000544910 COL3A1P02461 1466 aaPredicted RBP6.84□□□□□ -1.31
VPS50-220ENST00000544910 ZSCAN22P10073 491 aaPredicted RBP6.84□□□□□ -1.31
VPS50-220ENST00000544910 ZGPATQ8N5A5 531 aaKnown RBP6.84□□□□□ -1.31
VPS50-220ENST00000544910 CNNM1Q9NRU3 951 aa6.84□□□□□ -1.31
VPS50-220ENST00000544910 ARGLU1Q9NWB6 273 aaPredicted RBP6.84□□□□□ -1.31
VPS50-220ENST00000544910 HMG20BQ9P0W2 317 aa6.84□□□□□ -1.31
VPS50-220ENST00000544910 REREQ9P2R6 1566 aa6.84□□□□□ -1.31
VPS50-220ENST00000544910 KINO60870 393 aaKnown RBP6.84□□□□□ -1.31
VPS50-220ENST00000544910 FBXW7Q969H0 707 aa6.84□□□□□ -1.31
VPS50-220ENST00000544910 INTS4Q96HW7 963 aaKnown RBP6.84□□□□□ -1.31
VPS50-220ENST00000544910 CFAP45Q9UL16 551 aa6.84□□□□□ -1.31
VPS50-220ENST00000544910 GRM8O00222 908 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 SSH2Q76I76 1423 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 HMGB1P09429 215 aaKnown RBP6.83□□□□□ -1.32
VPS50-220ENST00000544910 SNRPA1P09661 255 aaKnown RBP6.83□□□□□ -1.32
VPS50-220ENST00000544910 CEBPZQ03701 1054 aaKnown RBP6.83□□□□□ -1.32
VPS50-220ENST00000544910 TRIM5Q9C035 493 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 ANTXR1Q9H6X2 564 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 CTNNA3Q9UI47 895 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 MAP3K11Q16584 847 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 LARP6Q9BRS8 491 aaKnown RBP6.83□□□□□ -1.32
VPS50-220ENST00000544910 PRDM11Q9NQV5 511 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 IGSF1Q8N6C5 1336 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 ANKRD26Q9UPS8 1709 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 GTF2E1P29083 439 aaPredicted RBP6.83□□□□□ -1.32
VPS50-220ENST00000544910 FKBP4Q02790 459 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS50-220ENST00000544910 AKAP2Q9Y2D5 859 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 PNMA6EA0A0J9YXQ4 647 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 SPC24Q8NBT2 197 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 ZNF592Q92610 1267 aa6.83□□□□□ -1.32
VPS50-220ENST00000544910 IBTKQ9P2D0 1353 aaPredicted RBP6.83□□□□□ -1.32
VPS50-220ENST00000544910 UBE2HP62256 183 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 SAFBQ15424 915 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS50-220ENST00000544910 UVSSAQ2YD98 709 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 ANKARQ7Z5J8 1434 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 NMIQ13287 307 aaPredicted RBP6.82□□□□□ -1.32
VPS50-220ENST00000544910 USP48Q86UV5 1035 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 RICTORQ6R327 1708 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 RIMBP3CA6NJZ7 1639 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 RIMBP3BA6NNM3 1639 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 RIMBP3Q9UFD9 1639 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 A0A087WZG4 1122 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 CLCN1P35523 988 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 STK38Q15208 465 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 IMMTQ16891 758 aaKnown RBP6.82□□□□□ -1.32
VPS50-220ENST00000544910 GDPD2Q9HCC8 539 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 CEP126Q9P2H0 1117 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 UQCRHLA0A096LP55 91 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 UQCRHP07919 91 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 VPS37DQ86XT2 251 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 XAGE3Q8WTP9 111 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 SCAND2PQ9GZW5 306 aaPredicted RBP6.82□□□□□ -1.32
VPS50-220ENST00000544910 PA2G4Q9UQ80 394 aaKnown RBP6.82□□□□□ -1.32
VPS50-220ENST00000544910 CNPY2Q9Y2B0 182 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 RAD50Q92878 1312 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 SPATA31D1Q6ZQQ2 1576 aa6.82□□□□□ -1.32
VPS50-220ENST00000544910 IFIT1P09914 478 aaKnown RBP6.81□□□□□ -1.32
VPS50-220ENST00000544910 AK2P54819 239 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 CAMK4Q16566 473 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 CCDC70Q6NSX1 233 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 OLFM4Q6UX06 510 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 SIRT2Q8IXJ6 389 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 ACBD3Q9H3P7 528 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 CWC25Q9NXE8 425 aaPredicted RBP6.81□□□□□ -1.32
VPS50-220ENST00000544910 TMOD3Q9NYL9 352 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 RBM8AQ9Y5S9 174 aaKnown RBP6.81□□□□□ -1.32
VPS50-220ENST00000544910 F13A1P00488 732 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 GCP02774 474 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 MCM5P33992 734 aa6.81□□□□□ -1.32
VPS50-220ENST00000544910 EIF4A1P60842 406 aaKnown RBP6.81□□□□□ -1.32
VPS50-220ENST00000544910 TPD52L1Q16890 204 aaPredicted RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms