RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 CD2APQ9Y5K6 639 aa24.76■■□□□ 1.55
DDX55-211ENST00000544429 ELL2O00472 640 aaPredicted RBP24.75■■□□□ 1.55
DDX55-211ENST00000544429 ANXA1P04083 346 aa24.75■■□□□ 1.55
DDX55-211ENST00000544429 TBC1D9BQ66K14 1250 aa24.75■■□□□ 1.55
DDX55-211ENST00000544429 MAP3K15Q6ZN16 1313 aa24.75■■□□□ 1.55
DDX55-211ENST00000544429 GOLGA2Q08379 1002 aa24.74■■□□□ 1.55
DDX55-211ENST00000544429 MYH16Q9H6N6 1097 aa24.74■■□□□ 1.55
DDX55-211ENST00000544429 PARP3Q9Y6F1 533 aa24.74■■□□□ 1.55
DDX55-211ENST00000544429 CACNA1FO60840 1977 aa24.74■■□□□ 1.55
DDX55-211ENST00000544429 HLFQ16534 295 aa24.73■■□□□ 1.55
DDX55-211ENST00000544429 TWISTNBQ3B726 338 aaPredicted RBP24.73■■□□□ 1.55
DDX55-211ENST00000544429 ATP10DQ9P241 1426 aa24.72■■□□□ 1.55
DDX55-211ENST00000544429 CHMP4AQ9BY43 222 aa24.72■■□□□ 1.55
DDX55-211ENST00000544429 ZNF652Q9Y2D9 606 aa24.72■■□□□ 1.55
DDX55-211ENST00000544429 EXOSC9Q06265 439 aaKnown RBP24.71■■□□□ 1.55
DDX55-211ENST00000544429 SLFN5Q08AF3 891 aa24.71■■□□□ 1.55
DDX55-211ENST00000544429 TRMT2AQ8IZ69 625 aaKnown RBP24.71■■□□□ 1.55
DDX55-211ENST00000544429 HYPKQ9NX55 129 aa24.71■■□□□ 1.55
DDX55-211ENST00000544429 ANKRD36CQ5JPF3 1778 aa24.71■■□□□ 1.55
DDX55-211ENST00000544429 CARMIL3Q8ND23 1372 aa24.7■■□□□ 1.55
DDX55-211ENST00000544429 GOLGB1Q14789 3259 aaKnown RBP24.7■■□□□ 1.54
DDX55-211ENST00000544429 E9PSI1 815 aa24.7■■□□□ 1.54
DDX55-211ENST00000544429 VAMP4O75379 141 aa24.7■■□□□ 1.54
DDX55-211ENST00000544429 CCDC30Q5VVM6 783 aa24.7■■□□□ 1.54
DDX55-211ENST00000544429 KIF6Q6ZMV9 814 aa24.7■■□□□ 1.54
DDX55-211ENST00000544429 COPS6Q7L5N1 327 aa24.7■■□□□ 1.54
DDX55-211ENST00000544429 NLGN2Q8NFZ4 835 aa24.7■■□□□ 1.54
DDX55-211ENST00000544429 XAGE3Q8WTP9 111 aa24.7■■□□□ 1.54
DDX55-211ENST00000544429 SERPINB2P05120 415 aa24.68■■□□□ 1.54
DDX55-211ENST00000544429 GIGYF2Q6Y7W6 1299 aaKnown RBP24.68■■□□□ 1.54
DDX55-211ENST00000544429 BRCA1P38398 1863 aaKnown RBP24.68■■□□□ 1.54
DDX55-211ENST00000544429 ANKRD31Q8N7Z5 1873 aa24.68■■□□□ 1.54
DDX55-211ENST00000544429 ARFGEF2Q9Y6D5 1785 aa24.67■■□□□ 1.54
DDX55-211ENST00000544429 PXDNLA1KZ92 1463 aa24.67■■□□□ 1.54
DDX55-211ENST00000544429 BICDL1Q6ZP65 573 aa24.67■■□□□ 1.54
DDX55-211ENST00000544429 CDCA7LQ96GN5 454 aa24.67■■□□□ 1.54
DDX55-211ENST00000544429 SETDB2Q96T68 719 aa24.67■■□□□ 1.54
DDX55-211ENST00000544429 ZBTB3Q9H5J0 574 aa24.67■■□□□ 1.54
DDX55-211ENST00000544429 N4BP2Q86UW6 1770 aaPredicted RBP24.66■■□□□ 1.54
DDX55-211ENST00000544429 ZNF34Q8IZ26 560 aa24.65■■□□□ 1.54
DDX55-211ENST00000544429 TGFB2P61812 414 aa24.64■■□□□ 1.54
DDX55-211ENST00000544429 KLHL34Q8N239 644 aa24.64■■□□□ 1.54
DDX55-211ENST00000544429 NIP7Q9Y221 180 aaKnown RBP eCLIP24.64■■□□□ 1.54
DDX55-211ENST00000544429 UTRNP46939 3433 aa24.64■■□□□ 1.53
DDX55-211ENST00000544429 UBN2Q6ZU65 1347 aa24.63■■□□□ 1.53
DDX55-211ENST00000544429 DLEC1Q9Y238 1755 aa24.63■■□□□ 1.53
DDX55-211ENST00000544429 AIMP1Q12904 312 aaKnown RBP24.63■■□□□ 1.53
DDX55-211ENST00000544429 PRR5LQ6MZQ0 368 aa24.63■■□□□ 1.53
DDX55-211ENST00000544429 PLBD2Q8NHP8 589 aa24.63■■□□□ 1.53
DDX55-211ENST00000544429 PHAXQ9H814 394 aaKnown RBP24.63■■□□□ 1.53
DDX55-211ENST00000544429 IBTKQ9P2D0 1353 aaPredicted RBP24.63■■□□□ 1.53
DDX55-211ENST00000544429 ANKRD13DQ6ZTN6 518 aa24.62■■□□□ 1.53
DDX55-211ENST00000544429 KCNA3P22001 575 aa24.6■■□□□ 1.53
DDX55-211ENST00000544429 HNRNPUQ00839 825 aaKnown RBP eCLIP24.6■■□□□ 1.53
DDX55-211ENST00000544429 STK31Q9BXU1 1019 aa24.6■■□□□ 1.53
DDX55-211ENST00000544429 TCIRG1Q13488 830 aa24.59■■□□□ 1.53
DDX55-211ENST00000544429 CNBD1Q8NA66 436 aa24.59■■□□□ 1.53
DDX55-211ENST00000544429 TCERG1O14776 1098 aaKnown RBP24.58■■□□□ 1.53
DDX55-211ENST00000544429 HSP90AB3PQ58FF7 597 aa24.58■■□□□ 1.53
DDX55-211ENST00000544429 BRIP1Q9BX63 1249 aa24.58■■□□□ 1.53
DDX55-211ENST00000544429 COL11A2P13942 1736 aaPredicted RBP24.58■■□□□ 1.52
DDX55-211ENST00000544429 SLC4A2P04920 1241 aa24.57■■□□□ 1.52
DDX55-211ENST00000544429 GPTP24298 496 aa24.57■■□□□ 1.52
DDX55-211ENST00000544429 G2E3Q7L622 706 aa24.57■■□□□ 1.52
DDX55-211ENST00000544429 NBPF5PQ86XG9 351 aaPredicted RBP24.57■■□□□ 1.52
DDX55-211ENST00000544429 RIC1Q4ADV7 1423 aa24.57■■□□□ 1.52
DDX55-211ENST00000544429 DPEP1P16444 411 aa24.56■■□□□ 1.52
DDX55-211ENST00000544429 PARP10Q53GL7 1025 aa24.56■■□□□ 1.52
DDX55-211ENST00000544429 TPTE2Q6XPS3 522 aa24.56■■□□□ 1.52
DDX55-211ENST00000544429 ISCA1Q9BUE6 129 aa24.56■■□□□ 1.52
DDX55-211ENST00000544429 ZBED9Q6R2W3 1325 aa24.56■■□□□ 1.52
DDX55-211ENST00000544429 ADCY9O60503 1353 aa24.55■■□□□ 1.52
DDX55-211ENST00000544429 A0A0G2JLW4 131 aa24.55■■□□□ 1.52
DDX55-211ENST00000544429 NTSR2O95665 410 aa24.55■■□□□ 1.52
DDX55-211ENST00000544429 TRIM28Q13263 835 aaKnown RBP24.55■■□□□ 1.52
DDX55-211ENST00000544429 SUSD4Q5VX71 490 aa24.55■■□□□ 1.52
DDX55-211ENST00000544429 NLRP10Q86W26 655 aa24.55■■□□□ 1.52
DDX55-211ENST00000544429 TNRC6CQ9HCJ0 1690 aaKnown RBP24.54■■□□□ 1.52
DDX55-211ENST00000544429 KLRG2A4D1S0 409 aaPredicted RBP24.54■■□□□ 1.52
DDX55-211ENST00000544429 ZNF428Q96B54 188 aa24.54■■□□□ 1.52
DDX55-211ENST00000544429 NYXQ9GZU5 481 aa24.54■■□□□ 1.52
DDX55-211ENST00000544429 ARFGEF1Q9Y6D6 1849 aa24.54■■□□□ 1.52
DDX55-211ENST00000544429 DDX58O95786 925 aaKnown RBP24.53■■□□□ 1.52
DDX55-211ENST00000544429 FLIIQ13045 1269 aa24.53■■□□□ 1.52
DDX55-211ENST00000544429 KSR2Q6VAB6 950 aa24.53■■□□□ 1.52
DDX55-211ENST00000544429 CCDC24Q8N4L8 307 aa24.53■■□□□ 1.52
DDX55-211ENST00000544429 RNF123Q5XPI4 1314 aa24.53■■□□□ 1.52
DDX55-211ENST00000544429 ABCC12Q96J65 1359 aa24.53■■□□□ 1.52
DDX55-211ENST00000544429 CT47B1P0C2W7 299 aaPredicted RBP24.52■■□□□ 1.52
DDX55-211ENST00000544429 YBX3P16989 372 aaKnown RBP eCLIP24.52■■□□□ 1.52
DDX55-211ENST00000544429 CHRNA5P30532 468 aa24.52■■□□□ 1.52
DDX55-211ENST00000544429 ST5P78524 1137 aa24.52■■□□□ 1.52
DDX55-211ENST00000544429 RIC3Q7Z5B4 369 aa24.52■■□□□ 1.52
DDX55-211ENST00000544429 PDZRN3Q9UPQ7 1066 aa24.52■■□□□ 1.52
DDX55-211ENST00000544429 PI4KAP2A4QPH2 592 aa24.51■■□□□ 1.51
DDX55-211ENST00000544429 PDE6BP35913 854 aa24.51■■□□□ 1.51
DDX55-211ENST00000544429 PI4KAP1Q8N8J0 262 aa24.51■■□□□ 1.51
DDX55-211ENST00000544429 METTL22Q9BUU2 404 aaPredicted RBP24.51■■□□□ 1.51
DDX55-211ENST00000544429 PPP1R42Q7Z4L9 355 aa24.5■■□□□ 1.51
DDX55-211ENST00000544429 MAP3K2Q9Y2U5 619 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 743.4 ms