RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 NOD1Q9Y239 953 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 GOLGA6L10A0A0M3HER8 536 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 TNIP1Q15025 636 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 FILIP1Q7Z7B0 1213 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 EHBP1Q8NDI1 1231 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 MTIF3Q9H2K0 278 aaKnown RBP9.11□□□□□ -0.95
VPS13D-211ENST00000543710 ZMYM4Q5VZL5 1548 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 ZNF518AQ6AHZ1 1483 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 HOXD10P28358 340 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 NAP1L1P55209 391 aaKnown RBP9.1□□□□□ -0.95
VPS13D-211ENST00000543710 PPP4R3AQ6IN85 833 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 ELMSAN1Q6PJG2 1045 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 CCDC150Q8NCX0 1101 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.1□□□□□ -0.951e-6■■■■■ 72.5
VPS13D-211ENST00000543710 DDX19AQ9NUU7 478 aaKnown RBP9.1□□□□□ -0.95
VPS13D-211ENST00000543710 KIF24Q5T7B8 1368 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 CCDC196A0A1B0GTZ2 297 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 GBP2P32456 591 aaPredicted RBP9.1□□□□□ -0.95
VPS13D-211ENST00000543710 HS1BP3Q53T59 392 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 IFNL2Q8IZJ0 200 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 ZCRB1Q8TBF4 217 aaKnown RBP9.1□□□□□ -0.95
VPS13D-211ENST00000543710 TSG101Q99816 390 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 U3KPZ7 1027 aaPredicted RBP9.1□□□□□ -0.95
VPS13D-211ENST00000543710 ATP10AO60312 1499 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 ZSCAN30Q86W11 494 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 RBM17Q96I25 401 aaKnown RBP9.1□□□□□ -0.95
VPS13D-211ENST00000543710 PRIMPOLQ96LW4 560 aa9.1□□□□□ -0.95
VPS13D-211ENST00000543710 OFD1O75665 1012 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 PABPC4Q13310 644 aaKnown RBP eCLIP9.09□□□□□ -0.95
VPS13D-211ENST00000543710 MAP3K11Q16584 847 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 CCDC181Q5TID7 509 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 ACSBG1Q96GR2 724 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 BMP2KQ9NSY1 1161 aaPredicted RBP9.09□□□□□ -0.95
VPS13D-211ENST00000543710 TBX22Q9Y458 520 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 CCDC171Q6TFL3 1326 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 FYB1O15117 783 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 BMP15O95972 392 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 NUDT16Q96DE0 195 aaKnown RBP9.09□□□□□ -0.95
VPS13D-211ENST00000543710 PPIP5K1Q6PFW1 1433 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 IMMTQ16891 758 aaKnown RBP9.09□□□□□ -0.95
VPS13D-211ENST00000543710 SULF1Q8IWU6 871 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 LARGE2Q8N3Y3 721 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 PAXBP1Q9Y5B6 917 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 GOLIM4O00461 696 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 TTF1Q15361 905 aaPredicted RBP9.09□□□□□ -0.95
VPS13D-211ENST00000543710 SLC4A8Q2Y0W8 1093 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 CCDC91Q7Z6B0 441 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 NLGN1Q8N2Q7 840 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 KIF1BPQ96EK5 621 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 SPATA32Q96LK8 384 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 DNAJC2Q99543 621 aaKnown RBP9.09□□□□□ -0.95
VPS13D-211ENST00000543710 LNPKQ9C0E8 428 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 AFF2P51816 1311 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 EIF4G3O43432 1585 aaKnown RBP9.09□□□□□ -0.95
VPS13D-211ENST00000543710 EXOSC9Q06265 439 aaKnown RBP9.09□□□□□ -0.95
VPS13D-211ENST00000543710 PDILTQ8N807 584 aa9.09□□□□□ -0.95
VPS13D-211ENST00000543710 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.09□□□□□ -0.95
VPS13D-211ENST00000543710 LRRFIP2Q9Y608 721 aaKnown RBP9.09□□□□□ -0.95
VPS13D-211ENST00000543710 KDM6BO15054 1643 aa9.09□□□□□ -0.96
VPS13D-211ENST00000543710 ARHGEF11O15085 1522 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 SERPINC1P01008 464 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 TRAF1Q13077 416 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 PANK1Q8TE04 598 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 TRAPPC8Q9Y2L5 1435 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 CETN2P41208 172 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 FMNL3Q8IVF7 1028 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 CNKSR1Q969H4 720 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 ZC3H12CQ9C0D7 883 aaKnown RBP9.08□□□□□ -0.96
VPS13D-211ENST00000543710 SAMD9Q5K651 1589 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 NPC1L1Q9UHC9 1359 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 GNAT3A8MTJ3 354 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 PPP1R12BO60237 982 aaPredicted RBP9.08□□□□□ -0.96
VPS13D-211ENST00000543710 HLA-DOAP06340 250 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 ACEP12821 1306 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 MCM4P33991 863 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 CHMP4BP1P59074 171 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 ANAPC15P60006 121 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 NLRP3Q96P20 1036 aa9.08□□□□□ -0.96
VPS13D-211ENST00000543710 H0YHG0 523 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 PRKAR2BP31323 418 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 BLOC1S2Q6QNY1 142 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 EP400NLQ6ZTU2 488 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 TTC21AQ8NDW8 1320 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 IFI16Q16666 785 aaKnown RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 AXDND1Q5T1B0 1012 aaPredicted RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 MAPKBP1O60336 1514 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 SHTN1A0MZ66 631 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 GCOM1H8Y6P7 765 aaPredicted RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 PRPF40AO75400 957 aaKnown RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 MYZAPP0CAP1 466 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 EZRP15311 586 aaKnown RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 ALDH1B1P30837 517 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 CASQ1P31415 396 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 FOXD4L5Q5VV16 416 aaPredicted RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 GIGYF2Q6Y7W6 1299 aaKnown RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 FOXD4L4Q8WXT5 416 aaPredicted RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 RNF41Q9H4P4 317 aaPredicted RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 PIK3R4Q99570 1358 aa9.07□□□□□ -0.96
VPS13D-211ENST00000543710 EPB41L2O43491 1005 aaKnown RBP9.07□□□□□ -0.96
VPS13D-211ENST00000543710 TUBB2AQ13885 445 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 172.5 ms