RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 SOGA3Q5TF21 947 aa20.64■□□□□ 0.89
RTN3-211ENST00000542238 RTF1Q92541 710 aaKnown RBP20.64■□□□□ 0.89
RTN3-211ENST00000542238 RSPH6AQ9H0K4 717 aa20.64■□□□□ 0.89
RTN3-211ENST00000542238 TAOK3Q9H2K8 898 aa20.64■□□□□ 0.89
RTN3-211ENST00000542238 SLX4Q8IY92 1834 aa20.63■□□□□ 0.89
RTN3-211ENST00000542238 MASTLQ96GX5 879 aa20.63■□□□□ 0.89
RTN3-211ENST00000542238 USP16Q9Y5T5 823 aa20.63■□□□□ 0.89
RTN3-211ENST00000542238 ARFGEF2Q9Y6D5 1785 aa20.63■□□□□ 0.89
RTN3-211ENST00000542238 POTECB2RU33 542 aa20.62■□□□□ 0.89
RTN3-211ENST00000542238 SRGNP10124 158 aa20.62■□□□□ 0.89
RTN3-211ENST00000542238 COL13A1Q5TAT6 717 aaPredicted RBP20.62■□□□□ 0.89
RTN3-211ENST00000542238 CLEC4GQ6UXB4 293 aa20.62■□□□□ 0.89
RTN3-211ENST00000542238 ZNF652Q9Y2D9 606 aa20.62■□□□□ 0.89
RTN3-211ENST00000542238 SNRPA1P09661 255 aaKnown RBP20.61■□□□□ 0.89
RTN3-211ENST00000542238 PRPF40BQ6NWY9 871 aaKnown RBP20.61■□□□□ 0.89
RTN3-211ENST00000542238 NBPF5PQ86XG9 351 aaPredicted RBP20.61■□□□□ 0.89
RTN3-211ENST00000542238 U2AF1L5P0DN76 240 aaPredicted RBP20.6■□□□□ 0.89
RTN3-211ENST00000542238 U2AF1Q01081 240 aaKnown RBP eCLIP20.6■□□□□ 0.89
RTN3-211ENST00000542238 PIP4K2AP48426 406 aaPredicted RBP20.59■□□□□ 0.89
RTN3-211ENST00000542238 MCM10Q7L590 875 aa20.58■□□□□ 0.89
RTN3-211ENST00000542238 PRAMEF22A3QJZ6 481 aa20.57■□□□□ 0.88
RTN3-211ENST00000542238 CHADLQ6NUI6 762 aa20.57■□□□□ 0.88
RTN3-211ENST00000542238 TPTE2Q6XPS3 522 aa20.57■□□□□ 0.88
RTN3-211ENST00000542238 PCNTO95613 3336 aa20.56■□□□□ 0.88
RTN3-211ENST00000542238 DDNO94850 711 aaPredicted RBP20.56■□□□□ 0.88
RTN3-211ENST00000542238 NPR1P16066 1061 aa20.56■□□□□ 0.88
RTN3-211ENST00000542238 TNS4Q8IZW8 715 aa20.56■□□□□ 0.88
RTN3-211ENST00000542238 IQCA1LA6NCM1 817 aa20.55■□□□□ 0.88
RTN3-211ENST00000542238 RGL2O15211 777 aa20.55■□□□□ 0.88
RTN3-211ENST00000542238 HTATSF1O43719 755 aaKnown RBP20.55■□□□□ 0.88
RTN3-211ENST00000542238 CCDC93Q567U6 631 aa20.55■□□□□ 0.88
RTN3-211ENST00000542238 NIP7Q9Y221 180 aaKnown RBP eCLIP20.55■□□□□ 0.88
RTN3-211ENST00000542238 HSPA1AP0DMV8 641 aaKnown RBP20.54■□□□□ 0.88
RTN3-211ENST00000542238 HSPA1BP0DMV9 641 aaKnown RBP20.54■□□□□ 0.88
RTN3-211ENST00000542238 PPP2R1AP30153 589 aa20.54■□□□□ 0.88
RTN3-211ENST00000542238 SCN4AP35499 1836 aa20.54■□□□□ 0.88
RTN3-211ENST00000542238 DCTN1Q14203 1278 aa20.53■□□□□ 0.88
RTN3-211ENST00000542238 C7orf43Q8WVR3 580 aa20.53■□□□□ 0.88
RTN3-211ENST00000542238 CREBZFQ9NS37 354 aa20.53■□□□□ 0.88
RTN3-211ENST00000542238 KLRG2A4D1S0 409 aaPredicted RBP20.52■□□□□ 0.88
RTN3-211ENST00000542238 NBPF26B4DH59 902 aa20.52■□□□□ 0.88
RTN3-211ENST00000542238 NEFMP07197 916 aa20.52■□□□□ 0.88
RTN3-211ENST00000542238 GTF2E1P29083 439 aaPredicted RBP20.52■□□□□ 0.88
RTN3-211ENST00000542238 TAF7Q15545 349 aaPredicted RBP20.52■□□□□ 0.88
RTN3-211ENST00000542238 NBPF10Q6P3W6 841 aaKnown RBP20.52■□□□□ 0.88
RTN3-211ENST00000542238 NBPF15Q8N660 670 aa20.52■□□□□ 0.88
RTN3-211ENST00000542238 FAM177BA6PVY3 158 aa20.51■□□□□ 0.87
RTN3-211ENST00000542238 CAPN15O75808 1086 aa20.51■□□□□ 0.87
RTN3-211ENST00000542238 FKBP4Q02790 459 aaKnown RBP eCLIP20.51■□□□□ 0.87
RTN3-211ENST00000542238 RTKN2Q8IZC4 609 aa20.51■□□□□ 0.87
RTN3-211ENST00000542238 LAMB4A4D0S4 1761 aa20.5■□□□□ 0.87
RTN3-211ENST00000542238 POTEIP0CG38 1075 aa20.5■□□□□ 0.87
RTN3-211ENST00000542238 POTEJP0CG39 1038 aa20.5■□□□□ 0.87
RTN3-211ENST00000542238 ALDH1B1P30837 517 aa20.5■□□□□ 0.87
RTN3-211ENST00000542238 LDHDQ86WU2 507 aa20.5■□□□□ 0.87
RTN3-211ENST00000542238 L3MBTL3Q96JM7 780 aaPredicted RBP20.5■□□□□ 0.87
RTN3-211ENST00000542238 MKRN1Q9UHC7 482 aaKnown RBP20.49■□□□□ 0.87
RTN3-211ENST00000542238 TAF1DQ9H5J8 278 aaPredicted RBP20.48■□□□□ 0.87
RTN3-211ENST00000542238 ZNF277Q9NRM2 450 aaPredicted RBP20.48■□□□□ 0.87
RTN3-211ENST00000542238 DLG5Q8TDM6 1919 aa20.47■□□□□ 0.87
RTN3-211ENST00000542238 HLFQ16534 295 aa20.47■□□□□ 0.87
RTN3-211ENST00000542238 PNISRQ8TF01 805 aaKnown RBP20.47■□□□□ 0.87
RTN3-211ENST00000542238 NYXQ9GZU5 481 aa20.47■□□□□ 0.87
RTN3-211ENST00000542238 MIS18AQ9NYP9 233 aa20.47■□□□□ 0.87
RTN3-211ENST00000542238 NUP98P52948 1817 aa20.46■□□□□ 0.87
RTN3-211ENST00000542238 HACL1Q9UJ83 578 aa20.46■□□□□ 0.87
RTN3-211ENST00000542238 EAPPQ56P03 285 aaPredicted RBP20.45■□□□□ 0.86
RTN3-211ENST00000542238 OLFM4Q6UX06 510 aa20.45■□□□□ 0.86
RTN3-211ENST00000542238 NGEFQ8N5V2 710 aa20.45■□□□□ 0.86
RTN3-211ENST00000542238 CLEC11AQ9Y240 323 aa20.45■□□□□ 0.86
RTN3-211ENST00000542238 PASKQ96RG2 1323 aa20.45■□□□□ 0.86
RTN3-211ENST00000542238 ZNF541Q9H0D2 1346 aa20.45■□□□□ 0.86
RTN3-211ENST00000542238 ERVV-1B6SEH8 477 aa20.44■□□□□ 0.86
RTN3-211ENST00000542238 IARSP41252 1262 aaKnown RBP20.44■□□□□ 0.86
RTN3-211ENST00000542238 SYNE4Q8N205 404 aa20.44■□□□□ 0.86
RTN3-211ENST00000542238 KDM3BQ7LBC6 1761 aa20.44■□□□□ 0.86
RTN3-211ENST00000542238 KIF6Q6ZMV9 814 aa20.43■□□□□ 0.86
RTN3-211ENST00000542238 PNMA8AQ86V59 439 aaPredicted RBP20.43■□□□□ 0.86
RTN3-211ENST00000542238 JDP2Q8WYK2 163 aa20.43■□□□□ 0.86
RTN3-211ENST00000542238 CNTNAP1P78357 1384 aa20.43■□□□□ 0.86
RTN3-211ENST00000542238 TMEM88BA6NKF7 163 aa20.42■□□□□ 0.86
RTN3-211ENST00000542238 EPHX2P34913 555 aa20.42■□□□□ 0.86
RTN3-211ENST00000542238 CC2D2BQ6DHV5 1058 aa20.42■□□□□ 0.86
RTN3-211ENST00000542238 RRP7AQ9Y3A4 280 aaKnown RBP20.42■□□□□ 0.86
RTN3-211ENST00000542238 MAP3K15Q6ZN16 1313 aa20.42■□□□□ 0.86
RTN3-211ENST00000542238 FZD9O00144 591 aa20.41■□□□□ 0.86
RTN3-211ENST00000542238 CRY2Q49AN0 593 aa20.41■□□□□ 0.86
RTN3-211ENST00000542238 NUTM1Q86Y26 1132 aa20.41■□□□□ 0.86
RTN3-211ENST00000542238 GPC2Q8N158 579 aa20.41■□□□□ 0.86
RTN3-211ENST00000542238 RPGRQ92834 1020 aaKnown RBP20.41■□□□□ 0.86
RTN3-211ENST00000542238 PSMD1Q99460 953 aa20.41■□□□□ 0.86
RTN3-211ENST00000542238 ITGBL1O95965 494 aaPredicted RBP20.4■□□□□ 0.86
RTN3-211ENST00000542238 ABCC12Q96J65 1359 aa20.39■□□□□ 0.85
RTN3-211ENST00000542238 RNF123Q5XPI4 1314 aa20.39■□□□□ 0.85
RTN3-211ENST00000542238 MYL6BP14649 208 aa20.39■□□□□ 0.85
RTN3-211ENST00000542238 EIF4A1P60842 406 aaKnown RBP20.39■□□□□ 0.85
RTN3-211ENST00000542238 GRIPAP1Q4V328 841 aa20.39■□□□□ 0.85
RTN3-211ENST00000542238 PNNQ9H307 717 aaKnown RBP20.39■□□□□ 0.85
RTN3-211ENST00000542238 GPTP24298 496 aa20.38■□□□□ 0.85
RTN3-211ENST00000542238 EIF6P56537 245 aaKnown RBP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms