RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SRGNP10124 158 aa18.17■□□□□ 0.5
SS18-204ENST00000539244 ST5P78524 1137 aa18.17■□□□□ 0.5
SS18-204ENST00000539244 DPY19L2Q6NUT2 758 aa18.17■□□□□ 0.5
SS18-204ENST00000539244 CLEC4GQ6UXB4 293 aa18.17■□□□□ 0.5
SS18-204ENST00000539244 CCDC24Q8N4L8 307 aa18.17■□□□□ 0.5
SS18-204ENST00000539244 SNRPA1P09661 255 aaKnown RBP18.16■□□□□ 0.5
SS18-204ENST00000539244 ERFEQ4G0M1 354 aa18.16■□□□□ 0.5
SS18-204ENST00000539244 TAOK3Q9H2K8 898 aa18.16■□□□□ 0.5
SS18-204ENST00000539244 SOGA3Q5TF21 947 aa18.15■□□□□ 0.5
SS18-204ENST00000539244 MASTLQ96GX5 879 aa18.15■□□□□ 0.5
SS18-204ENST00000539244 CACNA1SQ13698 1873 aa18.14■□□□□ 0.49
SS18-204ENST00000539244 PRAMEF22A3QJZ6 481 aa18.14■□□□□ 0.49
SS18-204ENST00000539244 HTATSF1O43719 755 aaKnown RBP18.14■□□□□ 0.49
SS18-204ENST00000539244 PPP2R1AP30153 589 aa18.14■□□□□ 0.49
SS18-204ENST00000539244 PRPF40BQ6NWY9 871 aaKnown RBP18.14■□□□□ 0.49
SS18-204ENST00000539244 RTF1Q92541 710 aaKnown RBP18.14■□□□□ 0.49
SS18-204ENST00000539244 KLRG2A4D1S0 409 aaPredicted RBP18.13■□□□□ 0.49
SS18-204ENST00000539244 NPHP1O15259 732 aa18.13■□□□□ 0.49
SS18-204ENST00000539244 U2AF1L5P0DN76 240 aaPredicted RBP18.13■□□□□ 0.49
SS18-204ENST00000539244 U2AF1Q01081 240 aaKnown RBP eCLIP18.13■□□□□ 0.492e-6■■■■□ 21.7
SS18-204ENST00000539244 MCM10Q7L590 875 aa18.13■□□□□ 0.49
SS18-204ENST00000539244 ZNF219Q9P2Y4 722 aaPredicted RBP18.13■□□□□ 0.49
SS18-204ENST00000539244 ZNF652Q9Y2D9 606 aa18.13■□□□□ 0.49
SS18-204ENST00000539244 PIP4K2AP48426 406 aaPredicted RBP18.12■□□□□ 0.49
SS18-204ENST00000539244 NBPF5PQ86XG9 351 aaPredicted RBP18.12■□□□□ 0.49
SS18-204ENST00000539244 C7orf43Q8WVR3 580 aa18.12■□□□□ 0.49
SS18-204ENST00000539244 NBPF26B4DH59 902 aa18.11■□□□□ 0.49
SS18-204ENST00000539244 NBPF10Q6P3W6 841 aaKnown RBP18.11■□□□□ 0.49
SS18-204ENST00000539244 NBPF15Q8N660 670 aa18.11■□□□□ 0.49
SS18-204ENST00000539244 COL13A1Q5TAT6 717 aaPredicted RBP18.1■□□□□ 0.49
SS18-204ENST00000539244 LAMB4A4D0S4 1761 aa18.09■□□□□ 0.49
SS18-204ENST00000539244 NPR1P16066 1061 aa18.09■□□□□ 0.49
SS18-204ENST00000539244 DCTN1Q14203 1278 aa18.09■□□□□ 0.49
SS18-204ENST00000539244 TPTE2Q6XPS3 522 aa18.09■□□□□ 0.49
SS18-204ENST00000539244 SCN4AP35499 1836 aa18.08■□□□□ 0.48
SS18-204ENST00000539244 DDNO94850 711 aaPredicted RBP18.08■□□□□ 0.48
SS18-204ENST00000539244 TAF7Q15545 349 aaPredicted RBP18.08■□□□□ 0.48
SS18-204ENST00000539244 CCDC93Q567U6 631 aa18.08■□□□□ 0.48
SS18-204ENST00000539244 CHADLQ6NUI6 762 aa18.08■□□□□ 0.48
SS18-204ENST00000539244 L3MBTL3Q96JM7 780 aaPredicted RBP18.08■□□□□ 0.48
SS18-204ENST00000539244 NIP7Q9Y221 180 aaKnown RBP eCLIP18.08■□□□□ 0.48
SS18-204ENST00000539244 DLG5Q8TDM6 1919 aa18.06■□□□□ 0.48
SS18-204ENST00000539244 KDM3BQ7LBC6 1761 aa18.06■□□□□ 0.48
SS18-204ENST00000539244 IQCA1LA6NCM1 817 aa18.05■□□□□ 0.48
SS18-204ENST00000539244 FKBP4Q02790 459 aaKnown RBP eCLIP18.05■□□□□ 0.48
SS18-204ENST00000539244 CREBZFQ9NS37 354 aa18.05■□□□□ 0.48
SS18-204ENST00000539244 POTEIP0CG38 1075 aa18.04■□□□□ 0.48
SS18-204ENST00000539244 POTEJP0CG39 1038 aa18.04■□□□□ 0.48
SS18-204ENST00000539244 HSPA1AP0DMV8 641 aaKnown RBP18.04■□□□□ 0.48
SS18-204ENST00000539244 HSPA1BP0DMV9 641 aaKnown RBP18.04■□□□□ 0.48
SS18-204ENST00000539244 HLFQ16534 295 aa18.04■□□□□ 0.48
SS18-204ENST00000539244 RTKN2Q8IZC4 609 aa18.04■□□□□ 0.48
SS18-204ENST00000539244 ERVV-1B6SEH8 477 aa18.03■□□□□ 0.48
SS18-204ENST00000539244 ALDH1B1P30837 517 aa18.03■□□□□ 0.48
SS18-204ENST00000539244 PNISRQ8TF01 805 aaKnown RBP18.03■□□□□ 0.48
SS18-204ENST00000539244 SNED1Q8TER0 1413 aa18.03■□□□□ 0.48
SS18-204ENST00000539244 NUP98P52948 1817 aa18.02■□□□□ 0.48
SS18-204ENST00000539244 CRY2Q49AN0 593 aa18.02■□□□□ 0.48
SS18-204ENST00000539244 RIC1Q4ADV7 1423 aa18.02■□□□□ 0.48
SS18-204ENST00000539244 LDHDQ86WU2 507 aa18.02■□□□□ 0.48
SS18-204ENST00000539244 TAF1DQ9H5J8 278 aaPredicted RBP18.02■□□□□ 0.48
SS18-204ENST00000539244 MIS18AQ9NYP9 233 aa18.02■□□□□ 0.48
SS18-204ENST00000539244 PASKQ96RG2 1323 aa18.01■□□□□ 0.47
SS18-204ENST00000539244 PLEKHF1Q96S99 279 aa18.01■□□□□ 0.47
SS18-204ENST00000539244 NYXQ9GZU5 481 aa18.01■□□□□ 0.47
SS18-204ENST00000539244 ZNF277Q9NRM2 450 aaPredicted RBP18.01■□□□□ 0.47
SS18-204ENST00000539244 IBTKQ9P2D0 1353 aaPredicted RBP18.01■□□□□ 0.47
SS18-204ENST00000539244 MAP3K15Q6ZN16 1313 aa18■□□□□ 0.47
SS18-204ENST00000539244 ZNF541Q9H0D2 1346 aa18■□□□□ 0.47
SS18-204ENST00000539244 ADAMTSL1Q8N6G6 1762 aa18■□□□□ 0.47
SS18-204ENST00000539244 FZD9O00144 591 aa18■□□□□ 0.47
SS18-204ENST00000539244 NEFMP07197 916 aa18■□□□□ 0.47
SS18-204ENST00000539244 EIF4A1P60842 406 aaKnown RBP18■□□□□ 0.47
SS18-204ENST00000539244 OLFM4Q6UX06 510 aa18■□□□□ 0.47
SS18-204ENST00000539244 TNS4Q8IZW8 715 aa18■□□□□ 0.47
SS18-204ENST00000539244 ABCC12Q96J65 1359 aa18■□□□□ 0.47
SS18-204ENST00000539244 FAM177BA6PVY3 158 aa17.99■□□□□ 0.47
SS18-204ENST00000539244 IARSP41252 1262 aaKnown RBP17.99■□□□□ 0.47
SS18-204ENST00000539244 PSMD1Q99460 953 aa17.99■□□□□ 0.47
SS18-204ENST00000539244 GTF2E1P29083 439 aaPredicted RBP17.98■□□□□ 0.47
SS18-204ENST00000539244 NFE2L2Q16236 605 aa17.98■□□□□ 0.47
SS18-204ENST00000539244 CC2D2BQ6DHV5 1058 aa17.98■□□□□ 0.47
SS18-204ENST00000539244 HACL1Q9UJ83 578 aa17.98■□□□□ 0.47
SS18-204ENST00000539244 CNTNAP1P78357 1384 aa17.98■□□□□ 0.47
SS18-204ENST00000539244 ITGBL1O95965 494 aaPredicted RBP17.97■□□□□ 0.47
SS18-204ENST00000539244 HOXA10P31260 410 aaPredicted RBP17.97■□□□□ 0.47
SS18-204ENST00000539244 SYNE4Q8N205 404 aa17.97■□□□□ 0.47
SS18-204ENST00000539244 ERBB4Q15303 1308 aa17.97■□□□□ 0.47
SS18-204ENST00000539244 KIF6Q6ZMV9 814 aa17.96■□□□□ 0.47
SS18-204ENST00000539244 TTLL7Q6ZT98 887 aa17.96■□□□□ 0.47
SS18-204ENST00000539244 NUTM1Q86Y26 1132 aa17.96■□□□□ 0.47
SS18-204ENST00000539244 MKRN1Q9UHC7 482 aaKnown RBP17.96■□□□□ 0.47
SS18-204ENST00000539244 UBN2Q6ZU65 1347 aa17.96■□□□□ 0.46
SS18-204ENST00000539244 EPHX2P34913 555 aa17.95■□□□□ 0.46
SS18-204ENST00000539244 GRIPAP1Q4V328 841 aa17.95■□□□□ 0.46
SS18-204ENST00000539244 PNMA8AQ86V59 439 aaPredicted RBP17.95■□□□□ 0.46
SS18-204ENST00000539244 ZNF34Q8IZ26 560 aa17.95■□□□□ 0.46
SS18-204ENST00000539244 GPC2Q8N158 579 aa17.95■□□□□ 0.46
SS18-204ENST00000539244 NGEFQ8N5V2 710 aa17.95■□□□□ 0.46
SS18-204ENST00000539244 PNNQ9H307 717 aaKnown RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms