RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ST20-MTHFSA0A0A6YYL1 179 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 ZBBXA8MT70 800 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 C1QTNF8P60827 252 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 MSS51Q4VC12 460 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 PLA2G2CQ5R387 149 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 PLEKHM2Q8IWE5 1019 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 USB1Q9BQ65 265 aaKnown RBP5.72□□□□□ -1.49
CD44-226ENST00000527889 POLR3GLQ9BT43 218 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 SLAIN2Q9P270 581 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 RIMS2Q9UQ26 1411 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 KIF7Q2M1P5 1343 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 RPGRIP1LQ68CZ1 1315 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 RBM47A0AV96 593 aaKnown RBP5.71□□□□□ -1.5
CD44-226ENST00000527889 USP17L5A8MUK1 530 aa5.71□□□□□ -1.5
CD44-226ENST00000527889 SKIP12755 728 aa5.71□□□□□ -1.5
CD44-226ENST00000527889 SSFA2P28290 1259 aa5.71□□□□□ -1.5
CD44-226ENST00000527889 FAM174AQ8TBP5 190 aa5.71□□□□□ -1.5
CD44-226ENST00000527889 ZFYVE9O95405 1425 aa5.71□□□□□ -1.5
CD44-226ENST00000527889 MAP2P11137 1827 aaKnown RBP5.71□□□□□ -1.5
CD44-226ENST00000527889 ANKRD26Q9UPS8 1709 aa5.71□□□□□ -1.5
CD44-226ENST00000527889 NLRP1Q9C000 1473 aa5.71□□□□□ -1.5
CD44-226ENST00000527889 AKAP12Q02952 1782 aa5.7□□□□□ -1.5
CD44-226ENST00000527889 FAM196BA6NMK8 535 aa5.7□□□□□ -1.5
CD44-226ENST00000527889 DXOO77932 396 aaKnown RBP5.7□□□□□ -1.5
CD44-226ENST00000527889 MMP16P51512 607 aa5.7□□□□□ -1.5
CD44-226ENST00000527889 DNAJC14Q6Y2X3 702 aaPredicted RBP5.7□□□□□ -1.5
CD44-226ENST00000527889 IGSF5Q9NSI5 407 aa5.7□□□□□ -1.5
CD44-226ENST00000527889 FKBPLQ9UIM3 349 aa5.7□□□□□ -1.5
CD44-226ENST00000527889 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L15C9J2P7 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L10C9JJH3 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L13C9JLJ4 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L12C9JPN9 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L11C9JVI0 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L21D6R901 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L18D6R9N7 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L22D6RA61 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L17D6RBQ6 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L19D6RCP7 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L20D6RJB6 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 F12P00748 615 aaPredicted RBP5.69□□□□□ -1.5
CD44-226ENST00000527889 HMGB1P09429 215 aaKnown RBP5.69□□□□□ -1.5
CD44-226ENST00000527889 ARID4AP29374 1257 aaPredicted RBP5.69□□□□□ -1.5
CD44-226ENST00000527889 GGCXP38435 758 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 USP17L24Q0WX57 530 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 CRTC2Q53ET0 693 aaPredicted RBP5.69□□□□□ -1.5
CD44-226ENST00000527889 TMEM132EQ6IEE7 984 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 ANKLE1Q8NAG6 615 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 C14orf93Q9H972 538 aaKnown RBP5.69□□□□□ -1.5
CD44-226ENST00000527889 FCF1Q9Y324 198 aaKnown RBP5.69□□□□□ -1.5
CD44-226ENST00000527889 ZC3H4Q9UPT8 1303 aaKnown RBP5.69□□□□□ -1.5
CD44-226ENST00000527889 SLIT1O75093 1534 aa5.69□□□□□ -1.5
CD44-226ENST00000527889 EIF3AQ14152 1382 aaKnown RBP5.68□□□□□ -1.5
CD44-226ENST00000527889 JUNDP17535 347 aa5.68□□□□□ -1.5
CD44-226ENST00000527889 PTK7Q13308 1070 aa5.68□□□□□ -1.5
CD44-226ENST00000527889 NOM1Q5C9Z4 860 aaKnown RBP5.68□□□□□ -1.5
CD44-226ENST00000527889 LIAT1Q6ZQX7 453 aa5.68□□□□□ -1.5
CD44-226ENST00000527889 DEPDC4Q8N2C3 294 aa5.68□□□□□ -1.5
CD44-226ENST00000527889 CLP1Q92989 425 aaKnown RBP5.68□□□□□ -1.5
CD44-226ENST00000527889 TESK2Q96S53 571 aa5.68□□□□□ -1.5
CD44-226ENST00000527889 PRKD2Q9BZL6 878 aa5.68□□□□□ -1.5
CD44-226ENST00000527889 MKRN1Q9UHC7 482 aaKnown RBP5.68□□□□□ -1.5
CD44-226ENST00000527889 TULP4Q9NRJ4 1543 aa5.68□□□□□ -1.5
CD44-226ENST00000527889 XRN1Q8IZH2 1706 aaKnown RBP5.68□□□□□ -1.5
CD44-226ENST00000527889 STRCP1A6NGW2 1772 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 LRP5O75197 1615 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 YTHDC2Q9H6S0 1430 aaKnown RBP5.67□□□□□ -1.5
CD44-226ENST00000527889 ARHGAP23Q9P227 1491 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 SOWAHDA6NJG2 315 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 RGS20O76081 388 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 ERCC3P19447 782 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 STK26Q9P289 416 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 MAP10Q9P2G4 905 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 TRAK1Q9UPV9 953 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 NALCNQ8IZF0 1738 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 CPS1P31327 1500 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 DIP2AQ14689 1571 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 XIRP1Q702N8 1843 aaKnown RBP5.67□□□□□ -1.5
CD44-226ENST00000527889 TMEM2Q9UHN6 1383 aa5.67□□□□□ -1.5
CD44-226ENST00000527889 TOPAZ1Q8N9V7 1692 aa5.66□□□□□ -1.5
CD44-226ENST00000527889 MON2Q7Z3U7 1717 aa5.66□□□□□ -1.5
CD44-226ENST00000527889 DLC1Q96QB1 1528 aa5.66□□□□□ -1.5
CD44-226ENST00000527889 RASA1P20936 1047 aa5.66□□□□□ -1.5
CD44-226ENST00000527889 NCOA4Q13772 614 aa5.66□□□□□ -1.5
CD44-226ENST00000527889 CNGB1Q14028 1251 aaPredicted RBP5.66□□□□□ -1.5
CD44-226ENST00000527889 LARP1Q6PKG0 1096 aaKnown RBP5.66□□□□□ -1.5
CD44-226ENST00000527889 PHTF2Q8N3S3 785 aa5.66□□□□□ -1.5
CD44-226ENST00000527889 FAM200AQ8TCP9 573 aa5.66□□□□□ -1.5
CD44-226ENST00000527889 CDCA7Q9BWT1 371 aaPredicted RBP5.66□□□□□ -1.5
CD44-226ENST00000527889 KIAA1522Q9P206 1035 aaPredicted RBP5.66□□□□□ -1.5
CD44-226ENST00000527889 CEP126Q9P2H0 1117 aa5.66□□□□□ -1.5
CD44-226ENST00000527889 CENPJQ9HC77 1338 aaPredicted RBP5.66□□□□□ -1.5
CD44-226ENST00000527889 ATP5J2-PTCD1G3V325 749 aa5.65□□□□□ -1.5
CD44-226ENST00000527889 ANP32CO43423 234 aa5.65□□□□□ -1.5
CD44-226ENST00000527889 CDK11BP21127 795 aaKnown RBP5.65□□□□□ -1.5
CD44-226ENST00000527889 LTKP29376 864 aa5.65□□□□□ -1.5
CD44-226ENST00000527889 SERPINB4P48594 390 aa5.65□□□□□ -1.5
CD44-226ENST00000527889 TMF1P82094 1093 aa5.65□□□□□ -1.5
CD44-226ENST00000527889 SAFB2Q14151 953 aaKnown RBP eCLIP5.65□□□□□ -1.5
CD44-226ENST00000527889 ANKMY2Q8IV38 441 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms