RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 LTBP3Q9NS15 1303 aa19.23■□□□□ 0.67
CPSF1-201ENST00000526271 BTBD11A6QL63 1104 aa19.22■□□□□ 0.67
CPSF1-201ENST00000526271 DCTN1Q14203 1278 aa19.22■□□□□ 0.67
CPSF1-201ENST00000526271 PRPF40BQ6NWY9 871 aaKnown RBP19.22■□□□□ 0.67
CPSF1-201ENST00000526271 OLFM4Q6UX06 510 aa19.22■□□□□ 0.67
CPSF1-201ENST00000526271 MCM10Q7L590 875 aa19.22■□□□□ 0.67
CPSF1-201ENST00000526271 TEX13AQ9BXU3 409 aaPredicted RBP19.22■□□□□ 0.67
CPSF1-201ENST00000526271 PDE6BP35913 854 aa19.21■□□□□ 0.67
CPSF1-201ENST00000526271 DZIP3Q86Y13 1208 aaKnown RBP19.21■□□□□ 0.67
CPSF1-201ENST00000526271 SNED1Q8TER0 1413 aa19.21■□□□□ 0.67
CPSF1-201ENST00000526271 LAMB4A4D0S4 1761 aa19.2■□□□□ 0.66
CPSF1-201ENST00000526271 KDM3BQ7LBC6 1761 aa19.2■□□□□ 0.66
CPSF1-201ENST00000526271 DDNO94850 711 aaPredicted RBP19.2■□□□□ 0.66
CPSF1-201ENST00000526271 ERFEQ4G0M1 354 aa19.2■□□□□ 0.66
CPSF1-201ENST00000526271 CNBD1Q8NA66 436 aa19.2■□□□□ 0.66
CPSF1-201ENST00000526271 SETDB2Q96T68 719 aa19.2■□□□□ 0.66
CPSF1-201ENST00000526271 ADAMTSL1Q8N6G6 1762 aa19.19■□□□□ 0.66
CPSF1-201ENST00000526271 KLRG2A4D1S0 409 aaPredicted RBP19.19■□□□□ 0.66
CPSF1-201ENST00000526271 PPP2R1AP30153 589 aa19.19■□□□□ 0.66
CPSF1-201ENST00000526271 STYK1Q6J9G0 422 aa19.19■□□□□ 0.66
CPSF1-201ENST00000526271 SLC51AQ86UW1 340 aa19.19■□□□□ 0.66
CPSF1-201ENST00000526271 COL4A5P29400 1685 aa19.18■□□□□ 0.66
CPSF1-201ENST00000526271 TAOK3Q9H2K8 898 aa19.18■□□□□ 0.66
CPSF1-201ENST00000526271 PDZRN3Q9UPQ7 1066 aa19.18■□□□□ 0.66
CPSF1-201ENST00000526271 NUP98P52948 1817 aa19.17■□□□□ 0.66
CPSF1-201ENST00000526271 HLFQ16534 295 aa19.17■□□□□ 0.66
CPSF1-201ENST00000526271 MASTLQ96GX5 879 aa19.17■□□□□ 0.66
CPSF1-201ENST00000526271 SCN4AP35499 1836 aa19.16■□□□□ 0.66
CPSF1-201ENST00000526271 HSPA1AP0DMV8 641 aaKnown RBP19.16■□□□□ 0.66
CPSF1-201ENST00000526271 HSPA1BP0DMV9 641 aaKnown RBP19.16■□□□□ 0.66
CPSF1-201ENST00000526271 CNKSR1Q969H4 720 aa19.15■□□□□ 0.66
CPSF1-201ENST00000526271 MIS18AQ9NYP9 233 aa19.15■□□□□ 0.66
CPSF1-201ENST00000526271 ZNF541Q9H0D2 1346 aa19.15■□□□□ 0.66
CPSF1-201ENST00000526271 SNRPA1P09661 255 aaKnown RBP19.14■□□□□ 0.65
CPSF1-201ENST00000526271 CLEC4GQ6UXB4 293 aa19.14■□□□□ 0.65
CPSF1-201ENST00000526271 ABCC12Q96J65 1359 aa19.14■□□□□ 0.65
CPSF1-201ENST00000526271 LTBP1Q14766 1721 aa19.14■□□□□ 0.65
CPSF1-201ENST00000526271 U2AF1L5P0DN76 240 aaPredicted RBP19.13■□□□□ 0.65
CPSF1-201ENST00000526271 ST5P78524 1137 aa19.13■□□□□ 0.65
CPSF1-201ENST00000526271 U2AF1Q01081 240 aaKnown RBP eCLIP19.13■□□□□ 0.65
CPSF1-201ENST00000526271 PASKQ96RG2 1323 aa19.13■□□□□ 0.65
CPSF1-201ENST00000526271 CHADLQ6NUI6 762 aa19.12■□□□□ 0.65
CPSF1-201ENST00000526271 DPY19L2Q6NUT2 758 aa19.12■□□□□ 0.65
CPSF1-201ENST00000526271 NBPF5PQ86XG9 351 aaPredicted RBP19.12■□□□□ 0.65
CPSF1-201ENST00000526271 L3MBTL3Q96JM7 780 aaPredicted RBP19.11■□□□□ 0.65
CPSF1-201ENST00000526271 ZNF277Q9NRM2 450 aaPredicted RBP19.11■□□□□ 0.65
CPSF1-201ENST00000526271 FAM177BA6PVY3 158 aa19.1■□□□□ 0.65
CPSF1-201ENST00000526271 NPR1P16066 1061 aa19.1■□□□□ 0.65
CPSF1-201ENST00000526271 TAF1DQ9H5J8 278 aaPredicted RBP19.1■□□□□ 0.65
CPSF1-201ENST00000526271 NIP7Q9Y221 180 aaKnown RBP eCLIP19.1■□□□□ 0.65
CPSF1-201ENST00000526271 CAPN15O75808 1086 aa19.09■□□□□ 0.65
CPSF1-201ENST00000526271 ITGBL1O95965 494 aaPredicted RBP19.09■□□□□ 0.65
CPSF1-201ENST00000526271 CFAP53Q96M91 514 aa19.09■□□□□ 0.65
CPSF1-201ENST00000526271 PLEKHF1Q96S99 279 aa19.09■□□□□ 0.65
CPSF1-201ENST00000526271 THUMPD2Q9BTF0 503 aaKnown RBP19.09■□□□□ 0.65
CPSF1-201ENST00000526271 MKRN1Q9UHC7 482 aaKnown RBP19.09■□□□□ 0.65
CPSF1-201ENST00000526271 HTATSF1O43719 755 aaKnown RBP19.08■□□□□ 0.64
CPSF1-201ENST00000526271 FKBP4Q02790 459 aaKnown RBP eCLIP19.08■□□□□ 0.64
CPSF1-201ENST00000526271 CCDC93Q567U6 631 aa19.08■□□□□ 0.64
CPSF1-201ENST00000526271 TTLL7Q6ZT98 887 aa19.08■□□□□ 0.64
CPSF1-201ENST00000526271 TNS4Q8IZW8 715 aa19.08■□□□□ 0.64
CPSF1-201ENST00000526271 CREBZFQ9NS37 354 aa19.08■□□□□ 0.64
CPSF1-201ENST00000526271 UBN2Q6ZU65 1347 aa19.07■□□□□ 0.64
CPSF1-201ENST00000526271 RGL2O15211 777 aa19.07■□□□□ 0.64
CPSF1-201ENST00000526271 TAF7Q15545 349 aaPredicted RBP19.07■□□□□ 0.64
CPSF1-201ENST00000526271 NUTM1Q86Y26 1132 aa19.07■□□□□ 0.64
CPSF1-201ENST00000526271 CRY2Q49AN0 593 aa19.06■□□□□ 0.64
CPSF1-201ENST00000526271 C3orf67Q6ZVT6 689 aa19.06■□□□□ 0.64
CPSF1-201ENST00000526271 RTF1Q92541 710 aaKnown RBP19.06■□□□□ 0.64
CPSF1-201ENST00000526271 NUDCQ9Y266 331 aa19.06■□□□□ 0.64
CPSF1-201ENST00000526271 CNTNAP1P78357 1384 aa19.06■□□□□ 0.64
CPSF1-201ENST00000526271 FZD9O00144 591 aa19.05■□□□□ 0.64
CPSF1-201ENST00000526271 NPHP1O15259 732 aa19.05■□□□□ 0.64
CPSF1-201ENST00000526271 EIF4A1P60842 406 aaKnown RBP19.05■□□□□ 0.64
CPSF1-201ENST00000526271 SOGA3Q5TF21 947 aa19.05■□□□□ 0.64
CPSF1-201ENST00000526271 TPTE2Q6XPS3 522 aa19.05■□□□□ 0.64
CPSF1-201ENST00000526271 LRP10Q7Z4F1 713 aa19.05■□□□□ 0.64
CPSF1-201ENST00000526271 ZNF652Q9Y2D9 606 aa19.05■□□□□ 0.64
CPSF1-201ENST00000526271 LDHDQ86WU2 507 aa19.04■□□□□ 0.64
CPSF1-201ENST00000526271 NPM2Q86SE8 214 aaKnown RBP19.03■□□□□ 0.64
CPSF1-201ENST00000526271 SYNE4Q8N205 404 aa19.03■□□□□ 0.64
CPSF1-201ENST00000526271 NGEFQ8N5V2 710 aa19.03■□□□□ 0.64
CPSF1-201ENST00000526271 LAMB2P55268 1798 aa19.03■□□□□ 0.64
CPSF1-201ENST00000526271 RNF123Q5XPI4 1314 aa19.02■□□□□ 0.64
CPSF1-201ENST00000526271 MAP3K15Q6ZN16 1313 aa19.02■□□□□ 0.64
CPSF1-201ENST00000526271 RIC1Q4ADV7 1423 aa19.02■□□□□ 0.64
CPSF1-201ENST00000526271 FOXN1O15353 648 aa19.02■□□□□ 0.64
CPSF1-201ENST00000526271 IARSP41252 1262 aaKnown RBP19.02■□□□□ 0.64
CPSF1-201ENST00000526271 VEGFBP49765 207 aa19.01■□□□□ 0.63
CPSF1-201ENST00000526271 FMR1Q06787 632 aaKnown RBP eCLIP19.01■□□□□ 0.632e-6■■■□□ 16.2
CPSF1-201ENST00000526271 SUSD4Q5VX71 490 aa19.01■□□□□ 0.63
CPSF1-201ENST00000526271 IQCA1LA6NCM1 817 aa19■□□□□ 0.63
CPSF1-201ENST00000526271 ERVV-1B6SEH8 477 aa19■□□□□ 0.63
CPSF1-201ENST00000526271 GPTP24298 496 aa19■□□□□ 0.63
CPSF1-201ENST00000526271 PDIA6Q15084 440 aa19■□□□□ 0.63
CPSF1-201ENST00000526271 ZNF34Q8IZ26 560 aa19■□□□□ 0.63
CPSF1-201ENST00000526271 TAF1P21675 1872 aa19■□□□□ 0.63
CPSF1-201ENST00000526271 NTSR2O95665 410 aa18.99■□□□□ 0.63
CPSF1-201ENST00000526271 HOXA10P31260 410 aaPredicted RBP18.99■□□□□ 0.63
CPSF1-201ENST00000526271 EPHX2P34913 555 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms