RNA–Protein interactions for RNA: ENST00000520948.5

VEGFA-222, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 1,199 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-222ENST00000520948 CARMIL3Q8ND23 1372 aa23.65■■□□□ 1.38
VEGFA-222ENST00000520948 IL16Q14005 1332 aa23.64■■□□□ 1.38
VEGFA-222ENST00000520948 BICDL1Q6ZP65 573 aa23.64■■□□□ 1.37
VEGFA-222ENST00000520948 KDM2BQ8NHM5 1336 aa23.63■■□□□ 1.37
VEGFA-222ENST00000520948 GNAI1P63096 354 aa23.63■■□□□ 1.37
VEGFA-222ENST00000520948 SCN7AQ01118 1682 aa23.63■■□□□ 1.37
VEGFA-222ENST00000520948 RBM46Q8TBY0 533 aaKnown RBP23.62■■□□□ 1.37
VEGFA-222ENST00000520948 TEX13AQ9BXU3 409 aaPredicted RBP23.62■■□□□ 1.37
VEGFA-222ENST00000520948 STARD3NLO95772 234 aa23.61■■□□□ 1.37
VEGFA-222ENST00000520948 C2CD5Q86YS7 1000 aa23.61■■□□□ 1.37
VEGFA-222ENST00000520948 RRAGCQ9HB90 399 aa23.61■■□□□ 1.37
VEGFA-222ENST00000520948 MBIPQ9NS73 344 aa23.61■■□□□ 1.37
VEGFA-222ENST00000520948 ZNF330Q9Y3S2 320 aaPredicted RBP23.61■■□□□ 1.37
VEGFA-222ENST00000520948 LAS1LQ9Y4W2 734 aaKnown RBP23.61■■□□□ 1.37
VEGFA-222ENST00000520948 CCDC88AQ3V6T2 1871 aa23.61■■□□□ 1.37
VEGFA-222ENST00000520948 ANKRD31Q8N7Z5 1873 aa23.61■■□□□ 1.37
VEGFA-222ENST00000520948 TIAM2Q8IVF5 1701 aa23.61■■□□□ 1.37
VEGFA-222ENST00000520948 SNRPA1P09661 255 aaKnown RBP23.6■■□□□ 1.37
VEGFA-222ENST00000520948 EIF5P55010 431 aaKnown RBP23.6■■□□□ 1.37
VEGFA-222ENST00000520948 PRAMEF22A3QJZ6 481 aa23.59■■□□□ 1.37
VEGFA-222ENST00000520948 HTRA3P83110 453 aa23.59■■□□□ 1.37
VEGFA-222ENST00000520948 DNAJC5GQ8N7S2 189 aa23.59■■□□□ 1.37
VEGFA-222ENST00000520948 USP16Q9Y5T5 823 aa23.59■■□□□ 1.37
VEGFA-222ENST00000520948 TBC1D9BQ66K14 1250 aa23.58■■□□□ 1.37
VEGFA-222ENST00000520948 SPINK5Q9NQ38 1064 aaPredicted RBP23.58■■□□□ 1.37
VEGFA-222ENST00000520948 COL11A2P13942 1736 aaPredicted RBP23.58■■□□□ 1.37
VEGFA-222ENST00000520948 PRELPP51888 382 aa23.57■■□□□ 1.36
VEGFA-222ENST00000520948 TTLL6Q8N841 843 aa23.57■■□□□ 1.36
VEGFA-222ENST00000520948 A0A087WZG4 1122 aa23.56■■□□□ 1.36
VEGFA-222ENST00000520948 H0YIN7 160 aa23.56■■□□□ 1.36
VEGFA-222ENST00000520948 CCDC24Q8N4L8 307 aa23.56■■□□□ 1.36
VEGFA-222ENST00000520948 TBC1D2BQ9UPU7 963 aa23.56■■□□□ 1.36
VEGFA-222ENST00000520948 LMNB1P20700 586 aa23.55■■□□□ 1.36
VEGFA-222ENST00000520948 FSTL1Q12841 308 aa23.54■■□□□ 1.36
VEGFA-222ENST00000520948 KRT24Q2M2I5 525 aa23.54■■□□□ 1.36
VEGFA-222ENST00000520948 CACNA1SQ13698 1873 aa23.53■■□□□ 1.36
VEGFA-222ENST00000520948 LAMB4A4D0S4 1761 aa23.53■■□□□ 1.36
VEGFA-222ENST00000520948 BCORQ6W2J9 1755 aa23.53■■□□□ 1.36
VEGFA-222ENST00000520948 A1BGP04217 495 aa23.53■■□□□ 1.36
VEGFA-222ENST00000520948 ZNF219Q9P2Y4 722 aaPredicted RBP23.53■■□□□ 1.36
VEGFA-222ENST00000520948 NFKBIEO00221 500 aa23.52■■□□□ 1.36
VEGFA-222ENST00000520948 TSR2Q969E8 191 aaKnown RBP23.52■■□□□ 1.36
VEGFA-222ENST00000520948 ZNF622Q969S3 477 aaKnown RBP eCLIP23.52■■□□□ 1.362e-16■□□□□ 8.9
VEGFA-222ENST00000520948 ZC3H4Q9UPT8 1303 aaKnown RBP23.52■■□□□ 1.36
VEGFA-222ENST00000520948 IL6STP40189 918 aaPredicted RBP23.51■■□□□ 1.35
VEGFA-222ENST00000520948 GOLGA2Q08379 1002 aa23.51■■□□□ 1.35
VEGFA-222ENST00000520948 PRR5LQ6MZQ0 368 aa23.51■■□□□ 1.35
VEGFA-222ENST00000520948 HOXB7P09629 217 aa23.5■■□□□ 1.35
VEGFA-222ENST00000520948 C8orf58Q8NAV2 365 aa23.5■■□□□ 1.35
VEGFA-222ENST00000520948 PIP4K2AP48426 406 aaPredicted RBP23.49■■□□□ 1.35
VEGFA-222ENST00000520948 HNRNPUQ00839 825 aaKnown RBP eCLIP23.49■■□□□ 1.358e-7■□□□□ 10.9
VEGFA-222ENST00000520948 DUSP27Q5VZP5 1158 aa23.49■■□□□ 1.35
VEGFA-222ENST00000520948 TRMT2AQ8IZ69 625 aaKnown RBP23.49■■□□□ 1.35
VEGFA-222ENST00000520948 SMC1BQ8NDV3 1235 aa23.49■■□□□ 1.35
VEGFA-222ENST00000520948 BRIP1Q9BX63 1249 aa23.49■■□□□ 1.35
VEGFA-222ENST00000520948 FANCIQ9NVI1 1328 aa23.49■■□□□ 1.35
VEGFA-222ENST00000520948 FER1L6Q2WGJ9 1857 aa23.49■■□□□ 1.35
VEGFA-222ENST00000520948 GLTPD2A6NH11 291 aa23.48■■□□□ 1.35
VEGFA-222ENST00000520948 NBPF26B4DH59 902 aa23.48■■□□□ 1.35
VEGFA-222ENST00000520948 C21orf2O43822 256 aa23.48■■□□□ 1.35
VEGFA-222ENST00000520948 CAMTA2O94983 1202 aa23.48■■□□□ 1.35
VEGFA-222ENST00000520948 PDE6BP35913 854 aa23.48■■□□□ 1.35
VEGFA-222ENST00000520948 SLFN5Q08AF3 891 aa23.48■■□□□ 1.35
VEGFA-222ENST00000520948 NBPF10Q6P3W6 841 aaKnown RBP23.48■■□□□ 1.35
VEGFA-222ENST00000520948 NPM2Q86SE8 214 aaKnown RBP23.48■■□□□ 1.35
VEGFA-222ENST00000520948 NBPF15Q8N660 670 aa23.48■■□□□ 1.35
VEGFA-222ENST00000520948 KLRG1Q96E93 195 aa23.48■■□□□ 1.35
VEGFA-222ENST00000520948 NPHP1O15259 732 aa23.47■■□□□ 1.35
VEGFA-222ENST00000520948 MYH16Q9H6N6 1097 aa23.47■■□□□ 1.35
VEGFA-222ENST00000520948 DICER1Q9UPY3 1922 aaKnown RBP23.47■■□□□ 1.35
VEGFA-222ENST00000520948 E9PSI1 815 aa23.46■■□□□ 1.35
VEGFA-222ENST00000520948 DZIP3Q86Y13 1208 aaKnown RBP23.46■■□□□ 1.35
VEGFA-222ENST00000520948 TSPYL6Q8N831 410 aa23.46■■□□□ 1.35
VEGFA-222ENST00000520948 CNBD1Q8NA66 436 aa23.46■■□□□ 1.35
VEGFA-222ENST00000520948 CDCA7LQ96GN5 454 aa23.46■■□□□ 1.35
VEGFA-222ENST00000520948 SETDB2Q96T68 719 aa23.46■■□□□ 1.35
VEGFA-222ENST00000520948 SLX4Q8IY92 1834 aa23.45■■□□□ 1.34
VEGFA-222ENST00000520948 VEGFAP15692 232 aaPredicted RBP23.45■■□□□ 1.34
VEGFA-222ENST00000520948 PDIA6Q15084 440 aa23.45■■□□□ 1.34
VEGFA-222ENST00000520948 ERBB4Q15303 1308 aa23.44■■□□□ 1.34
VEGFA-222ENST00000520948 ELL2O00472 640 aaPredicted RBP23.44■■□□□ 1.34
VEGFA-222ENST00000520948 EIF2S2P20042 333 aaKnown RBP23.44■■□□□ 1.34
VEGFA-222ENST00000520948 ARFGEF2Q9Y6D5 1785 aa23.44■■□□□ 1.34
VEGFA-222ENST00000520948 EXOSC9Q06265 439 aaKnown RBP23.43■■□□□ 1.34
VEGFA-222ENST00000520948 LRP10Q7Z4F1 713 aa23.43■■□□□ 1.34
VEGFA-222ENST00000520948 PDZRN3Q9UPQ7 1066 aa23.43■■□□□ 1.34
VEGFA-222ENST00000520948 ST5P78524 1137 aa23.42■■□□□ 1.34
VEGFA-222ENST00000520948 ZBED9Q6R2W3 1325 aa23.41■■□□□ 1.34
VEGFA-222ENST00000520948 VAMP4O75379 141 aa23.41■■□□□ 1.34
VEGFA-222ENST00000520948 ERFEQ4G0M1 354 aa23.41■■□□□ 1.34
VEGFA-222ENST00000520948 TWISTNBQ3B726 338 aaPredicted RBP23.4■■□□□ 1.34
VEGFA-222ENST00000520948 HDGFL1Q5TGJ6 251 aa23.4■■□□□ 1.34
VEGFA-222ENST00000520948 PRPF40BQ6NWY9 871 aaKnown RBP23.4■■□□□ 1.34
VEGFA-222ENST00000520948 JMYQ8N9B5 988 aa23.4■■□□□ 1.34
VEGFA-222ENST00000520948 POTECB2RU33 542 aa23.39■■□□□ 1.33
VEGFA-222ENST00000520948 DPY19L2Q6NUT2 758 aa23.39■■□□□ 1.33
VEGFA-222ENST00000520948 NECTIN2Q92692 538 aa23.39■■□□□ 1.33
VEGFA-222ENST00000520948 CNKSR1Q969H4 720 aa23.39■■□□□ 1.33
VEGFA-222ENST00000520948 TAOK3Q9H2K8 898 aa23.39■■□□□ 1.33
VEGFA-222ENST00000520948 SRGNP10124 158 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms