RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 C5P01031 1676 aa18.02■□□□□ 0.48
NUP54-217ENST00000514987 PARP4Q9UKK3 1724 aaKnown RBP18.02■□□□□ 0.48
NUP54-217ENST00000514987 IFIT2P09913 472 aaKnown RBP18.02■□□□□ 0.48
NUP54-217ENST00000514987 KLHL40Q2TBA0 621 aa18.02■□□□□ 0.48
NUP54-217ENST00000514987 TMX3Q96JJ7 454 aa18.02■□□□□ 0.48
NUP54-217ENST00000514987 G3BP1Q13283 466 aaKnown RBP eCLIP18.01■□□□□ 0.47
NUP54-217ENST00000514987 NFATC2IPQ8NCF5 419 aa18.01■□□□□ 0.47
NUP54-217ENST00000514987 FMNL2Q96PY5 1086 aa18.01■□□□□ 0.47
NUP54-217ENST00000514987 RAD50Q92878 1312 aa18.01■□□□□ 0.47
NUP54-217ENST00000514987 PRAMEF22A3QJZ6 481 aa18■□□□□ 0.47
NUP54-217ENST00000514987 HIP1O00291 1037 aa18■□□□□ 0.47
NUP54-217ENST00000514987 CWF19L2Q2TBE0 894 aaKnown RBP18■□□□□ 0.47
NUP54-217ENST00000514987 METTL22Q9BUU2 404 aaPredicted RBP18■□□□□ 0.47
NUP54-217ENST00000514987 XRCC6P12956 609 aaKnown RBP eCLIP18■□□□□ 0.47
NUP54-217ENST00000514987 COL15A1P39059 1388 aa17.99■□□□□ 0.47
NUP54-217ENST00000514987 AIMP1Q12904 312 aaKnown RBP17.99■□□□□ 0.47
NUP54-217ENST00000514987 SLC39A6Q13433 755 aa17.99■□□□□ 0.47
NUP54-217ENST00000514987 EVI5LQ96CN4 794 aa17.99■□□□□ 0.47
NUP54-217ENST00000514987 SUCLG2Q96I99 432 aa17.99■□□□□ 0.47
NUP54-217ENST00000514987 DIAPH3Q9NSV4 1193 aa17.99■□□□□ 0.47
NUP54-217ENST00000514987 PALD1Q9ULE6 856 aa17.99■□□□□ 0.47
NUP54-217ENST00000514987 ERBB4Q15303 1308 aa17.99■□□□□ 0.47
NUP54-217ENST00000514987 NEURL1BA8MQ27 555 aa17.98■□□□□ 0.47
NUP54-217ENST00000514987 GCKRQ14397 625 aa17.98■□□□□ 0.47
NUP54-217ENST00000514987 FAM43AQ8N2R8 423 aa17.98■□□□□ 0.47
NUP54-217ENST00000514987 XAGE3Q8WTP9 111 aa17.98■□□□□ 0.47
NUP54-217ENST00000514987 ZNF496Q96IT1 587 aaPredicted RBP17.98■□□□□ 0.47
NUP54-217ENST00000514987 LAMB4A4D0S4 1761 aa17.97■□□□□ 0.47
NUP54-217ENST00000514987 IGKV5-2P06315 115 aa17.97■□□□□ 0.47
NUP54-217ENST00000514987 CABP4P57796 275 aa17.97■□□□□ 0.47
NUP54-217ENST00000514987 ANKRD13DQ6ZTN6 518 aa17.97■□□□□ 0.47
NUP54-217ENST00000514987 ZGPATQ8N5A5 531 aaKnown RBP17.97■□□□□ 0.47
NUP54-217ENST00000514987 LSG1Q9H089 658 aaKnown RBP17.97■□□□□ 0.47
NUP54-217ENST00000514987 BICC1Q9H694 974 aaKnown RBP17.97■□□□□ 0.47
NUP54-217ENST00000514987 GRPEL1Q9HAV7 217 aa17.97■□□□□ 0.47
NUP54-217ENST00000514987 DDX49Q9Y6V7 483 aaKnown RBP17.97■□□□□ 0.47
NUP54-217ENST00000514987 CYP27B1O15528 508 aa17.96■□□□□ 0.47
NUP54-217ENST00000514987 COPS6Q7L5N1 327 aa17.96■□□□□ 0.47
NUP54-217ENST00000514987 DDX17Q92841 729 aaKnown RBP17.96■□□□□ 0.47
NUP54-217ENST00000514987 KAZALD1Q96I82 304 aa17.96■□□□□ 0.47
NUP54-217ENST00000514987 MCTP1Q6DN14 999 aa17.96■□□□□ 0.46
NUP54-217ENST00000514987 AACSQ86V21 672 aa17.96■□□□□ 0.46
NUP54-217ENST00000514987 CABLES1Q8TDN4 633 aa17.96■□□□□ 0.46
NUP54-217ENST00000514987 MAP4K4O95819 1239 aaPredicted RBP17.95■□□□□ 0.46
NUP54-217ENST00000514987 MYL6BP14649 208 aa17.95■□□□□ 0.46
NUP54-217ENST00000514987 CHRNA2Q15822 529 aa17.95■□□□□ 0.46
NUP54-217ENST00000514987 PCDH11XQ9BZA7 1347 aa17.94■□□□□ 0.46
NUP54-217ENST00000514987 PCDH11YQ9BZA8 1340 aa17.94■□□□□ 0.46
NUP54-217ENST00000514987 LRP10Q7Z4F1 713 aa17.94■□□□□ 0.46
NUP54-217ENST00000514987 MYD88Q99836 296 aa17.94■□□□□ 0.46
NUP54-217ENST00000514987 PA2G4Q9UQ80 394 aaKnown RBP17.94■□□□□ 0.46
NUP54-217ENST00000514987 SNX14Q9Y5W7 946 aa17.94■□□□□ 0.46
NUP54-217ENST00000514987 XIRP1Q702N8 1843 aaKnown RBP17.93■□□□□ 0.46
NUP54-217ENST00000514987 WDR17Q8IZU2 1322 aa17.93■□□□□ 0.46
NUP54-217ENST00000514987 SASH1O94885 1247 aa17.93■□□□□ 0.46
NUP54-217ENST00000514987 CWC27Q6UX04 472 aaKnown RBP17.93■□□□□ 0.46
NUP54-217ENST00000514987 COPRSQ9NQ92 184 aa17.93■□□□□ 0.46
NUP54-217ENST00000514987 LMBRD1Q9NUN5 540 aa17.93■□□□□ 0.46
NUP54-217ENST00000514987 ERVV-2B6SEH9 535 aa17.92■□□□□ 0.46
NUP54-217ENST00000514987 BRD1O95696 1058 aa17.92■□□□□ 0.46
NUP54-217ENST00000514987 PLBD2Q8NHP8 589 aa17.92■□□□□ 0.46
NUP54-217ENST00000514987 KCNB2Q92953 911 aa17.92■□□□□ 0.46
NUP54-217ENST00000514987 TM6SF1Q9BZW5 370 aa17.92■□□□□ 0.46
NUP54-217ENST00000514987 IL25Q9H293 177 aa17.92■□□□□ 0.46
NUP54-217ENST00000514987 ZDHHC9Q9Y397 364 aa17.92■□□□□ 0.46
NUP54-217ENST00000514987 ARFGEF2Q9Y6D5 1785 aa17.92■□□□□ 0.46
NUP54-217ENST00000514987 BRINP3Q76B58 766 aa17.91■□□□□ 0.46
NUP54-217ENST00000514987 UPF3BQ9BZI7 483 aaKnown RBP17.91■□□□□ 0.46
NUP54-217ENST00000514987 SNRKQ9NRH2 765 aa17.91■□□□□ 0.46
NUP54-217ENST00000514987 USP16Q9Y5T5 823 aa17.91■□□□□ 0.46
NUP54-217ENST00000514987 AFDNP55196 1824 aaKnown RBP17.91■□□□□ 0.46
NUP54-217ENST00000514987 ZNF445P59923 1031 aa17.91■□□□□ 0.46
NUP54-217ENST00000514987 PKP1Q13835 747 aa17.91■□□□□ 0.46
NUP54-217ENST00000514987 ZCRB1Q8TBF4 217 aaKnown RBP17.91■□□□□ 0.46
NUP54-217ENST00000514987 EAF2Q96CJ1 260 aaPredicted RBP17.91■□□□□ 0.46
NUP54-217ENST00000514987 SOS2Q07890 1332 aaPredicted RBP17.9■□□□□ 0.46
NUP54-217ENST00000514987 WDR33Q9C0J8 1336 aaKnown RBP17.9■□□□□ 0.46
NUP54-217ENST00000514987 MBD3O95983 291 aa17.9■□□□□ 0.46
NUP54-217ENST00000514987 RABL6Q3YEC7 729 aaPredicted RBP17.9■□□□□ 0.46
NUP54-217ENST00000514987 TTC14Q96N46 770 aa17.9■□□□□ 0.46
NUP54-217ENST00000514987 PRDM11Q9NQV5 511 aa17.9■□□□□ 0.46
NUP54-217ENST00000514987 LIMCH1Q9UPQ0 1083 aa17.9■□□□□ 0.46
NUP54-217ENST00000514987 NKX1-1Q15270 411 aaPredicted RBP17.89■□□□□ 0.45
NUP54-217ENST00000514987 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.89■□□□□ 0.45
NUP54-217ENST00000514987 ZKSCAN1P17029 563 aaPredicted RBP17.88■□□□□ 0.45
NUP54-217ENST00000514987 TOM1L2Q6ZVM7 507 aa17.88■□□□□ 0.45
NUP54-217ENST00000514987 ZSCAN31Q96LW9 406 aaPredicted RBP17.88■□□□□ 0.45
NUP54-217ENST00000514987 UBR2Q8IWV8 1755 aa17.88■□□□□ 0.45
NUP54-217ENST00000514987 CCDC171Q6TFL3 1326 aa17.88■□□□□ 0.45
NUP54-217ENST00000514987 GLI3P10071 1580 aa17.88■□□□□ 0.45
NUP54-217ENST00000514987 VPS53Q5VIR6 699 aa17.87■□□□□ 0.45
NUP54-217ENST00000514987 TICAM2Q86XR7 235 aa17.87■□□□□ 0.45
NUP54-217ENST00000514987 CARD10Q9BWT7 1032 aa17.87■□□□□ 0.45
NUP54-217ENST00000514987 RFX7Q2KHR2 1363 aa17.87■□□□□ 0.45
NUP54-217ENST00000514987 PRPF40AO75400 957 aaKnown RBP17.87■□□□□ 0.45
NUP54-217ENST00000514987 PDIA4P13667 645 aaKnown RBP17.87■□□□□ 0.45
NUP54-217ENST00000514987 ARXQ96QS3 562 aa17.87■□□□□ 0.45
NUP54-217ENST00000514987 SH2B1Q9NRF2 756 aaPredicted RBP17.87■□□□□ 0.45
NUP54-217ENST00000514987 CYP46A1Q9Y6A2 500 aa17.87■□□□□ 0.45
NUP54-217ENST00000514987 COL5A2P05997 1499 aaPredicted RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms