RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 NBPF10Q6P3W6 841 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 NBPF15Q8N660 670 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 SRCIN1Q9C0H9 1055 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 DDX19BQ9UMR2 479 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 CRKLP46109 303 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-209ENST00000509277 HYPKQ9NX55 129 aa10.74□□□□□ -0.69
LIMCH1-209ENST00000509277 PDE3AQ14432 1141 aa10.74□□□□□ -0.69
LIMCH1-209ENST00000509277 NCBP3Q53F19 620 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-209ENST00000509277 DEFB132Q7Z7B7 95 aa10.74□□□□□ -0.69
LIMCH1-209ENST00000509277 AK7Q96M32 723 aa10.74□□□□□ -0.69
LIMCH1-209ENST00000509277 NCLP19338 710 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-209ENST00000509277 EN1Q05925 392 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-209ENST00000509277 OS9Q13438 667 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-209ENST00000509277 DZIP3Q86Y13 1208 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-209ENST00000509277 SMARCC1Q92922 1105 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-209ENST00000509277 DISP2A7MBM2 1401 aa10.73□□□□□ -0.69
LIMCH1-209ENST00000509277 UBTFL1P0CB47 393 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-209ENST00000509277 L1TD1Q5T7N2 865 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-209ENST00000509277 WWC3Q9ULE0 1092 aa10.72□□□□□ -0.69
LIMCH1-209ENST00000509277 PCDHB15Q9Y5E8 787 aa10.72□□□□□ -0.69
LIMCH1-209ENST00000509277 UBE3BQ7Z3V4 1068 aa10.72□□□□□ -0.69
LIMCH1-209ENST00000509277 CHMP4AQ9BY43 222 aa10.72□□□□□ -0.69
LIMCH1-209ENST00000509277 BABAM1Q9NWV8 329 aa10.72□□□□□ -0.69
LIMCH1-209ENST00000509277 TFCP2L1Q9NZI6 479 aa10.72□□□□□ -0.69
LIMCH1-209ENST00000509277 PARP4Q9UKK3 1724 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-209ENST00000509277 GOLGB1Q14789 3259 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-209ENST00000509277 CCDC87Q9NVE4 849 aa10.72□□□□□ -0.69
LIMCH1-209ENST00000509277 LRRFIP2Q9Y608 721 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-209ENST00000509277 KLHL34Q8N239 644 aa10.71□□□□□ -0.69
LIMCH1-209ENST00000509277 SIL1Q9H173 461 aa10.71□□□□□ -0.69
LIMCH1-209ENST00000509277 SRP68Q9UHB9 627 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-209ENST00000509277 BCL9O00512 1426 aa10.71□□□□□ -0.69
LIMCH1-209ENST00000509277 A0A087WZG4 1122 aa10.71□□□□□ -0.69
LIMCH1-209ENST00000509277 KSR2Q6VAB6 950 aa10.71□□□□□ -0.69
LIMCH1-209ENST00000509277 ATRNO75882 1429 aa10.71□□□□□ -0.7
LIMCH1-209ENST00000509277 NBPF7P0C2Y1 421 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-209ENST00000509277 CYP19A1P11511 503 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-209ENST00000509277 LINC00116Q8NCU8 138 aa10.71□□□□□ -0.7
LIMCH1-209ENST00000509277 HLFQ16534 295 aa10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 MSL1Q68DK7 614 aa10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 TEX13AQ9BXU3 409 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 PTPRCP08575 1304 aa10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 RRP9O43818 475 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 IGHDP01880 384 aa10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 PDIA6Q15084 440 aa10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 FAM89AQ96GI7 184 aa10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 GLI3P10071 1580 aa10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 ZPR1O75312 459 aa10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 RFC4P35249 363 aa10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 CCT4P50991 539 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 BECN1Q14457 450 aa10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 SYNE4Q8N205 404 aa10.7□□□□□ -0.7
LIMCH1-209ENST00000509277 ABCC6O95255 1503 aa10.69□□□□□ -0.7
LIMCH1-209ENST00000509277 RTCBQ9Y3I0 505 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-209ENST00000509277 HOXB7P09629 217 aa10.69□□□□□ -0.7
LIMCH1-209ENST00000509277 UPF2Q9HAU5 1272 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-209ENST00000509277 EXOC6BQ9Y2D4 811 aa10.69□□□□□ -0.7
LIMCH1-209ENST00000509277 RNF123Q5XPI4 1314 aa10.69□□□□□ -0.7
LIMCH1-209ENST00000509277 TXNRD1Q16881 649 aa10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 ANKRD45Q5TZF3 282 aa10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 NUTM1Q86Y26 1132 aa10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 MPNDQ8N594 471 aa10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 LNPKQ9C0E8 428 aa10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 PPP1R1BQ9UD71 204 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 NIP7Q9Y221 180 aaKnown RBP eCLIP10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 LRRC4BQ9NT99 713 aa10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 TRMT112Q9UI30 125 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 NRAPQ86VF7 1730 aa10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 PDE4CQ08493 712 aa10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 EZH2Q15910 746 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 USPL1Q5W0Q7 1092 aa10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 KLHDC4Q8TBB5 520 aa10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 RWDD1Q9H446 243 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-209ENST00000509277 GNAI2P04899 355 aa10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 ANP32BQ92688 251 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 ZBTB7BO15156 539 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 SRGAP3O43295 1099 aa10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 XRCC6P12956 609 aaKnown RBP eCLIP10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 TAF7LQ5H9L4 462 aa10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 NWD2Q9ULI1 1742 aa10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 SCN11AQ9UI33 1791 aa10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 SMARCA5O60264 1052 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 FAM161AQ3B820 660 aa10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 DNTTIP2Q5QJE6 756 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 ARHGAP45Q92619 1136 aa10.67□□□□□ -0.7
LIMCH1-209ENST00000509277 DOT1LQ8TEK3 1739 aa10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 HCLS1P14317 486 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 R3HCC1Q9Y3T6 440 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 ADCY9O60503 1353 aa10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 GNAI3P08754 354 aa10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 KIAA1211Q6ZU35 1233 aa10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 PLBD2Q8NHP8 589 aa10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 PA2G4Q9UQ80 394 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 VIRMAQ69YN4 1812 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 ABCC4O15439 1325 aa10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 SURF6O75683 361 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 TRAPPC3LQ5T215 181 aa10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 BEND3Q5T5X7 828 aa10.66□□□□□ -0.7
LIMCH1-209ENST00000509277 AMIGO3Q86WK7 504 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms