RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 USPL1Q5W0Q7 1092 aa20.11■□□□□ 0.81
HPS4-216ENST00000493455 LRP10Q7Z4F1 713 aa20.11■□□□□ 0.81
HPS4-216ENST00000493455 NOB1Q9ULX3 412 aaKnown RBP20.11■□□□□ 0.81
HPS4-216ENST00000493455 NUP98P52948 1817 aa20.11■□□□□ 0.81
HPS4-216ENST00000493455 ADRA2BP18089 450 aa20.1■□□□□ 0.81
HPS4-216ENST00000493455 RIC3Q7Z5B4 369 aa20.1■□□□□ 0.81
HPS4-216ENST00000493455 FLAD1Q8NFF5 587 aa20.1■□□□□ 0.81
HPS4-216ENST00000493455 DDX58O95786 925 aaKnown RBP20.09■□□□□ 0.81
HPS4-216ENST00000493455 CENPBP07199 599 aaPredicted RBP20.09■□□□□ 0.81
HPS4-216ENST00000493455 PDGFDQ9GZP0 370 aaPredicted RBP20.09■□□□□ 0.81
HPS4-216ENST00000493455 MAP3K15Q6ZN16 1313 aa20.08■□□□□ 0.81
HPS4-216ENST00000493455 KIF16BQ96L93 1317 aa20.08■□□□□ 0.81
HPS4-216ENST00000493455 MSL1Q68DK7 614 aa20.08■□□□□ 0.81
HPS4-216ENST00000493455 NARFQ9UHQ1 456 aa20.08■□□□□ 0.81
HPS4-216ENST00000493455 USP42Q9H9J4 1324 aaKnown RBP20.07■□□□□ 0.8
HPS4-216ENST00000493455 F6X3S4 739 aa20.07■□□□□ 0.8
HPS4-216ENST00000493455 CAMTA2O94983 1202 aa20.07■□□□□ 0.8
HPS4-216ENST00000493455 BICDL1Q6ZP65 573 aa20.07■□□□□ 0.8
HPS4-216ENST00000493455 ANKRD13DQ6ZTN6 518 aa20.07■□□□□ 0.8
HPS4-216ENST00000493455 AFDNP55196 1824 aaKnown RBP20.06■□□□□ 0.8
HPS4-216ENST00000493455 PI4KAP2A4QPH2 592 aa20.06■□□□□ 0.8
HPS4-216ENST00000493455 HLFQ16534 295 aa20.06■□□□□ 0.8
HPS4-216ENST00000493455 SLC4A10Q6U841 1118 aa20.06■□□□□ 0.8
HPS4-216ENST00000493455 PI4KAP1Q8N8J0 262 aa20.06■□□□□ 0.8
HPS4-216ENST00000493455 MAP3K2Q9Y2U5 619 aa20.06■□□□□ 0.8
HPS4-216ENST00000493455 ANKRD36CQ5JPF3 1778 aa20.06■□□□□ 0.8
HPS4-216ENST00000493455 PLIN1O60240 522 aa20.05■□□□□ 0.8
HPS4-216ENST00000493455 PLBD2Q8NHP8 589 aa20.05■□□□□ 0.8
HPS4-216ENST00000493455 TNNQ9UQP3 1299 aa20.05■□□□□ 0.8
HPS4-216ENST00000493455 CASZ1Q86V15 1759 aa20.05■□□□□ 0.8
HPS4-216ENST00000493455 ADCY9O60503 1353 aa20.05■□□□□ 0.8
HPS4-216ENST00000493455 PTPRCP08575 1304 aa20.04■□□□□ 0.8
HPS4-216ENST00000493455 GPTP24298 496 aa20.04■□□□□ 0.8
HPS4-216ENST00000493455 ZKSCAN2Q63HK3 967 aa20.04■□□□□ 0.8
HPS4-216ENST00000493455 KSR2Q6VAB6 950 aa20.04■□□□□ 0.8
HPS4-216ENST00000493455 CLUAP1Q96AJ1 413 aa20.04■□□□□ 0.8
HPS4-216ENST00000493455 MYD88Q99836 296 aa20.04■□□□□ 0.8
HPS4-216ENST00000493455 ZNF652Q9Y2D9 606 aa20.04■□□□□ 0.8
HPS4-216ENST00000493455 IPO8O15397 1037 aaKnown RBP20.03■□□□□ 0.8
HPS4-216ENST00000493455 ZBTB7AO95365 584 aa20.03■□□□□ 0.8
HPS4-216ENST00000493455 GYS1P13807 737 aa20.03■□□□□ 0.8
HPS4-216ENST00000493455 DNAAF4Q8WXU2 420 aa20.03■□□□□ 0.8
HPS4-216ENST00000493455 FAM177BA6PVY3 158 aa20.02■□□□□ 0.8
HPS4-216ENST00000493455 ERVV-1B6SEH8 477 aa20.02■□□□□ 0.8
HPS4-216ENST00000493455 ATP5J2-PTCD1G3V325 749 aa20.02■□□□□ 0.8
HPS4-216ENST00000493455 FKBP8Q14318 412 aa20.02■□□□□ 0.8
HPS4-216ENST00000493455 GIGYF2Q6Y7W6 1299 aaKnown RBP20.02■□□□□ 0.8
HPS4-216ENST00000493455 API5Q9BZZ5 524 aaKnown RBP20.02■□□□□ 0.8
HPS4-216ENST00000493455 BCL2L12Q9HB09 334 aa20.02■□□□□ 0.8
HPS4-216ENST00000493455 BRPF1P55201 1214 aaPredicted RBP20.01■□□□□ 0.79
HPS4-216ENST00000493455 TBC1D9BQ66K14 1250 aa20.01■□□□□ 0.79
HPS4-216ENST00000493455 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.01■□□□□ 0.79
HPS4-216ENST00000493455 NIP7Q9Y221 180 aaKnown RBP eCLIP20.01■□□□□ 0.79
HPS4-216ENST00000493455 SUPT16HQ9Y5B9 1047 aaKnown RBP20.01■□□□□ 0.79
HPS4-216ENST00000493455 TRIM27P14373 513 aa20■□□□□ 0.79
HPS4-216ENST00000493455 NEXNQ0ZGT2 675 aa20■□□□□ 0.79
HPS4-216ENST00000493455 ATF7IPQ6VMQ6 1270 aa20■□□□□ 0.79
HPS4-216ENST00000493455 FTSJ3Q8IY81 847 aaKnown RBP20■□□□□ 0.79
HPS4-216ENST00000493455 ATF5Q9Y2D1 282 aaPredicted RBP20■□□□□ 0.79
HPS4-216ENST00000493455 RRP1P56182 461 aaKnown RBP19.99■□□□□ 0.79
HPS4-216ENST00000493455 HSP90AB3PQ58FF7 597 aa19.99■□□□□ 0.79
HPS4-216ENST00000493455 METTL22Q9BUU2 404 aaPredicted RBP19.99■□□□□ 0.79
HPS4-216ENST00000493455 TCIRG1Q13488 830 aa19.98■□□□□ 0.79
HPS4-216ENST00000493455 CWF19L2Q2TBE0 894 aaKnown RBP19.98■□□□□ 0.79
HPS4-216ENST00000493455 NPHP1O15259 732 aa19.97■□□□□ 0.79
HPS4-216ENST00000493455 NFIXQ14938 502 aa19.97■□□□□ 0.79
HPS4-216ENST00000493455 CLEC4GQ6UXB4 293 aa19.97■□□□□ 0.79
HPS4-216ENST00000493455 NLGN1Q8N2Q7 840 aa19.97■□□□□ 0.79
HPS4-216ENST00000493455 ARHGAP45Q92619 1136 aa19.97■□□□□ 0.79
HPS4-216ENST00000493455 DZIP1LQ8IYY4 767 aaKnown RBP19.96■□□□□ 0.79
HPS4-216ENST00000493455 PANK1Q8TE04 598 aa19.96■□□□□ 0.79
HPS4-216ENST00000493455 SLC16A10Q8TF71 515 aa19.96■□□□□ 0.79
HPS4-216ENST00000493455 SETDB2Q96T68 719 aa19.96■□□□□ 0.79
HPS4-216ENST00000493455 N4BP2Q86UW6 1770 aaPredicted RBP19.95■□□□□ 0.78
HPS4-216ENST00000493455 ATP10DQ9P241 1426 aa19.95■□□□□ 0.78
HPS4-216ENST00000493455 MMP10P09238 476 aa19.95■□□□□ 0.78
HPS4-216ENST00000493455 RTL5Q5HYW3 569 aaPredicted RBP19.95■□□□□ 0.78
HPS4-216ENST00000493455 SRCIN1Q9C0H9 1055 aa19.95■□□□□ 0.78
HPS4-216ENST00000493455 UBN2Q6ZU65 1347 aa19.95■□□□□ 0.78
HPS4-216ENST00000493455 PXDNLA1KZ92 1463 aa19.94■□□□□ 0.78
HPS4-216ENST00000493455 COL24A1Q17RW2 1714 aa19.94■□□□□ 0.78
HPS4-216ENST00000493455 IGKV5-2P06315 115 aa19.94■□□□□ 0.78
HPS4-216ENST00000493455 BEND3Q5T5X7 828 aa19.94■□□□□ 0.78
HPS4-216ENST00000493455 ZNF34Q8IZ26 560 aa19.94■□□□□ 0.78
HPS4-216ENST00000493455 TMEM57Q8N5G2 664 aa19.94■□□□□ 0.78
HPS4-216ENST00000493455 MTFR1LQ9H019 292 aa19.94■□□□□ 0.78
HPS4-216ENST00000493455 PARP3Q9Y6F1 533 aa19.94■□□□□ 0.78
HPS4-216ENST00000493455 ABCC4O15439 1325 aa19.94■□□□□ 0.78
HPS4-216ENST00000493455 NEURL1BA8MQ27 555 aa19.93■□□□□ 0.78
HPS4-216ENST00000493455 RLBP1P12271 317 aa19.93■□□□□ 0.78
HPS4-216ENST00000493455 DDR1Q08345 913 aa19.93■□□□□ 0.78
HPS4-216ENST00000493455 C20orf194Q5TEA3 1177 aa19.93■□□□□ 0.78
HPS4-216ENST00000493455 NBPF5PQ86XG9 351 aaPredicted RBP19.93■□□□□ 0.78
HPS4-216ENST00000493455 ITPRIPQ8IWB1 547 aa19.93■□□□□ 0.78
HPS4-216ENST00000493455 LINS1Q8NG48 757 aa19.93■□□□□ 0.78
HPS4-216ENST00000493455 JARID2Q92833 1246 aaPredicted RBP19.93■□□□□ 0.78
HPS4-216ENST00000493455 ISCA1Q9BUE6 129 aa19.93■□□□□ 0.78
HPS4-216ENST00000493455 CWC25Q9NXE8 425 aaPredicted RBP19.93■□□□□ 0.78
HPS4-216ENST00000493455 CARMIL3Q8ND23 1372 aa19.93■□□□□ 0.78
HPS4-216ENST00000493455 MS4A1P11836 297 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms