RNA–Protein interactions for RNA: ENST00000487997.1

PTBP3-208, Transcript of polypyrimidine tract binding protein 3, human

TSL 3

Gene PTBP3, Length 389 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTBP3-208	ENST00000487997	GNPAT	O15228	680 aa		12.5	□□□□□ -0.41
PTBP3-208	ENST00000487997	PHF14	O94880	888 aa		12.5	□□□□□ -0.41
PTBP3-208	ENST00000487997	CCDC184	Q52MB2	194 aa		12.5	□□□□□ -0.41
PTBP3-208	ENST00000487997	PNISR	Q8TF01	805 aa	Known RBP	12.5	□□□□□ -0.41
PTBP3-208	ENST00000487997	FMNL2	Q96PY5	1086 aa		12.5	□□□□□ -0.41
PTBP3-208	ENST00000487997	PDGFD	Q9GZP0	370 aa	Predicted RBP	12.5	□□□□□ -0.41
PTBP3-208	ENST00000487997	MTFR1L	Q9H019	292 aa		12.5	□□□□□ -0.41
PTBP3-208	ENST00000487997	PPP1R1B	Q9UD71	204 aa	Predicted RBP	12.5	□□□□□ -0.41
PTBP3-208	ENST00000487997	RTCB	Q9Y3I0	505 aa	Known RBP	12.5	□□□□□ -0.41
PTBP3-208	ENST00000487997	PNPLA7	Q6ZV29	1317 aa		12.5	□□□□□ -0.41
PTBP3-208	ENST00000487997	KCP	Q6ZWJ8	1503 aa		12.5	□□□□□ -0.41
PTBP3-208	ENST00000487997	CNTNAP4	Q9C0A0	1308 aa		12.49	□□□□□ -0.41
PTBP3-208	ENST00000487997		G3V3G9	751 aa		12.49	□□□□□ -0.41
PTBP3-208	ENST00000487997	STK25	O00506	426 aa		12.49	□□□□□ -0.41
PTBP3-208	ENST00000487997	SSFA2	P28290	1259 aa		12.49	□□□□□ -0.41
PTBP3-208	ENST00000487997	RC3H1	Q5TC82	1133 aa	Known RBP	12.49	□□□□□ -0.41
PTBP3-208	ENST00000487997	VSIG10	Q8N0Z9	540 aa		12.49	□□□□□ -0.41
PTBP3-208	ENST00000487997	SLC4A9	Q96Q91	983 aa		12.49	□□□□□ -0.41
PTBP3-208	ENST00000487997	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.49	□□□□□ -0.41
PTBP3-208	ENST00000487997	RRP7A	Q9Y3A4	280 aa	Known RBP	12.49	□□□□□ -0.41
PTBP3-208	ENST00000487997	STARD3NL	O95772	234 aa		12.48	□□□□□ -0.41
PTBP3-208	ENST00000487997	COL23A1	Q86Y22	540 aa	Predicted RBP	12.48	□□□□□ -0.41
PTBP3-208	ENST00000487997	DNAJC10	Q8IXB1	793 aa		12.48	□□□□□ -0.41
PTBP3-208	ENST00000487997	ZNF496	Q96IT1	587 aa	Predicted RBP	12.48	□□□□□ -0.41
PTBP3-208	ENST00000487997	HEG1	Q9ULI3	1381 aa		12.47	□□□□□ -0.41
PTBP3-208	ENST00000487997	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.47	□□□□□ -0.41
PTBP3-208	ENST00000487997	POLD1	P28340	1107 aa		12.47	□□□□□ -0.41
PTBP3-208	ENST00000487997	CRKL	P46109	303 aa	Known RBP	12.47	□□□□□ -0.41
PTBP3-208	ENST00000487997	TRAPPC3L	Q5T215	181 aa		12.47	□□□□□ -0.41
PTBP3-208	ENST00000487997	THUMPD2	Q9BTF0	503 aa	Known RBP	12.47	□□□□□ -0.41
PTBP3-208	ENST00000487997	C4A	P0C0L4	1744 aa		12.47	□□□□□ -0.41
PTBP3-208	ENST00000487997	COL24A1	Q17RW2	1714 aa		12.47	□□□□□ -0.41
PTBP3-208	ENST00000487997	LAMB4	A4D0S4	1761 aa		12.46	□□□□□ -0.41
PTBP3-208	ENST00000487997	APAF1	O14727	1248 aa		12.46	□□□□□ -0.41
PTBP3-208	ENST00000487997	SNPH	O15079	494 aa		12.46	□□□□□ -0.41
PTBP3-208	ENST00000487997	RPS6KA4	O75676	772 aa		12.46	□□□□□ -0.41
PTBP3-208	ENST00000487997	NPM2	Q86SE8	214 aa	Known RBP	12.46	□□□□□ -0.41
PTBP3-208	ENST00000487997	MICALL2	Q8IY33	904 aa		12.46	□□□□□ -0.41
PTBP3-208	ENST00000487997	CCDC87	Q9NVE4	849 aa		12.46	□□□□□ -0.41
PTBP3-208	ENST00000487997	MIS18A	Q9NYP9	233 aa		12.46	□□□□□ -0.41
PTBP3-208	ENST00000487997	KCNQ3	O43525	872 aa		12.45	□□□□□ -0.42
PTBP3-208	ENST00000487997	SNRPA1	P09661	255 aa	Known RBP	12.45	□□□□□ -0.42
PTBP3-208	ENST00000487997	CYP19A1	P11511	503 aa	Predicted RBP	12.45	□□□□□ -0.42
PTBP3-208	ENST00000487997	RFC4	P35249	363 aa		12.45	□□□□□ -0.42
PTBP3-208	ENST00000487997	FAM9B	Q8IZU0	186 aa		12.45	□□□□□ -0.42
PTBP3-208	ENST00000487997	FBXO22	Q8NEZ5	403 aa		12.45	□□□□□ -0.42
PTBP3-208	ENST00000487997	TSPYL4	Q9UJ04	414 aa		12.45	□□□□□ -0.42
PTBP3-208	ENST00000487997	CALD1	Q05682	793 aa	Known RBP	12.44	□□□□□ -0.42
PTBP3-208	ENST00000487997	DIEXF	Q68CQ4	756 aa	Known RBP	12.44	□□□□□ -0.42
PTBP3-208	ENST00000487997	LAS1L	Q9Y4W2	734 aa	Known RBP	12.44	□□□□□ -0.42
PTBP3-208	ENST00000487997	CANX	P27824	592 aa	Known RBP	12.43	□□□□□ -0.42
PTBP3-208	ENST00000487997	INTS5	Q6P9B9	1019 aa	Known RBP	12.43	□□□□□ -0.42
PTBP3-208	ENST00000487997	SMIM5	Q71RC9	77 aa		12.43	□□□□□ -0.42
PTBP3-208	ENST00000487997	ARHGEF1	Q92888	912 aa	Known RBP	12.43	□□□□□ -0.42
PTBP3-208	ENST00000487997	MFRP	Q9BY79	579 aa		12.43	□□□□□ -0.42
PTBP3-208	ENST00000487997	BABAM1	Q9NWV8	329 aa		12.43	□□□□□ -0.42
PTBP3-208	ENST00000487997	ZPR1	O75312	459 aa		12.42	□□□□□ -0.42
PTBP3-208	ENST00000487997	PTGER2	P43116	358 aa		12.42	□□□□□ -0.42
PTBP3-208	ENST00000487997	MSL1	Q68DK7	614 aa		12.42	□□□□□ -0.42
PTBP3-208	ENST00000487997	AMIGO3	Q86WK7	504 aa		12.42	□□□□□ -0.42
PTBP3-208	ENST00000487997	ARX	Q96QS3	562 aa		12.42	□□□□□ -0.42
PTBP3-208	ENST00000487997	ZNF330	Q9Y3S2	320 aa	Predicted RBP	12.42	□□□□□ -0.42
PTBP3-208	ENST00000487997	TMEM92	Q6UXU6	159 aa		12.41	□□□□□ -0.42
PTBP3-208	ENST00000487997	ZBTB1	Q9Y2K1	713 aa		12.41	□□□□□ -0.42
PTBP3-208	ENST00000487997		A0A087WZG4	1122 aa		12.4	□□□□□ -0.42
PTBP3-208	ENST00000487997	EIF4A1	P60842	406 aa	Known RBP	12.4	□□□□□ -0.42
PTBP3-208	ENST00000487997	NLGN1	Q8N2Q7	840 aa		12.4	□□□□□ -0.42
PTBP3-208	ENST00000487997	PLSCR2	Q9NRY7	297 aa		12.4	□□□□□ -0.42
PTBP3-208	ENST00000487997	PCDH10	Q9P2E7	1040 aa		12.4	□□□□□ -0.42
PTBP3-208	ENST00000487997	USP16	Q9Y5T5	823 aa		12.4	□□□□□ -0.42
PTBP3-208	ENST00000487997	COL15A1	P39059	1388 aa		12.4	□□□□□ -0.42
PTBP3-208	ENST00000487997	SOS1	Q07889	1333 aa	Predicted RBP	12.39	□□□□□ -0.43
PTBP3-208	ENST00000487997	CCER2	I3L3R5	266 aa		12.39	□□□□□ -0.43
PTBP3-208	ENST00000487997	A1BG	P04217	495 aa		12.39	□□□□□ -0.43
PTBP3-208	ENST00000487997	IL6ST	P40189	918 aa	Predicted RBP	12.39	□□□□□ -0.43
PTBP3-208	ENST00000487997	GNAI1	P63096	354 aa		12.39	□□□□□ -0.43
PTBP3-208	ENST00000487997	SENP3-EIF4A1	A0A087X0R7	540 aa		12.38	□□□□□ -0.43
PTBP3-208	ENST00000487997	PRAMEF22	A3QJZ6	481 aa		12.38	□□□□□ -0.43
PTBP3-208	ENST00000487997	CHL1	O00533	1208 aa		12.38	□□□□□ -0.43
PTBP3-208	ENST00000487997	GIGYF1	O75420	1035 aa	Predicted RBP	12.38	□□□□□ -0.43
PTBP3-208	ENST00000487997	CCDC27	Q2M243	656 aa		12.38	□□□□□ -0.43
PTBP3-208	ENST00000487997	MARVELD3	Q96A59	401 aa		12.38	□□□□□ -0.43
PTBP3-208	ENST00000487997	CFAP44	Q96MT7	982 aa		12.38	□□□□□ -0.43
PTBP3-208	ENST00000487997	USP42	Q9H9J4	1324 aa	Known RBP	12.37	□□□□□ -0.43
PTBP3-208	ENST00000487997	GYS1	P13807	737 aa		12.37	□□□□□ -0.43
PTBP3-208	ENST00000487997	EIF5	P55010	431 aa	Known RBP	12.37	□□□□□ -0.43
PTBP3-208	ENST00000487997	FHDC1	Q9C0D6	1143 aa	Predicted RBP	12.37	□□□□□ -0.43
PTBP3-208	ENST00000487997	IFT57	Q9NWB7	429 aa		12.37	□□□□□ -0.43
PTBP3-208	ENST00000487997	SRP68	Q9UHB9	627 aa	Known RBP	12.37	□□□□□ -0.43
PTBP3-208	ENST00000487997	NARF	Q9UHQ1	456 aa		12.37	□□□□□ -0.43
PTBP3-208	ENST00000487997	SALL2	Q9Y467	1007 aa	Predicted RBP	12.37	□□□□□ -0.43
PTBP3-208	ENST00000487997	BCOR	Q6W2J9	1755 aa		12.37	□□□□□ -0.43
PTBP3-208	ENST00000487997	NUP98	P52948	1817 aa		12.37	□□□□□ -0.43
PTBP3-208	ENST00000487997	AFDN	P55196	1824 aa	Known RBP	12.37	□□□□□ -0.43
PTBP3-208	ENST00000487997	SCN7A	Q01118	1682 aa		12.36	□□□□□ -0.43
PTBP3-208	ENST00000487997	MMP10	P09238	476 aa		12.36	□□□□□ -0.43
PTBP3-208	ENST00000487997	HOXB3	P14651	431 aa	Predicted RBP	12.36	□□□□□ -0.43
PTBP3-208	ENST00000487997	USPL1	Q5W0Q7	1092 aa		12.36	□□□□□ -0.43
PTBP3-208	ENST00000487997	NGEF	Q8N5V2	710 aa		12.36	□□□□□ -0.43
PTBP3-208	ENST00000487997	PARP3	Q9Y6F1	533 aa		12.36	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms