RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 C8orf58Q8NAV2 365 aa10.6□□□□□ -0.71
SF3A1-208ENST00000485618 KIAA1551Q9HCM1 1747 aa10.59□□□□□ -0.71
SF3A1-208ENST00000485618 KIF13BQ9NQT8 1826 aa10.59□□□□□ -0.71
SF3A1-208ENST00000485618 PRAMEF22A3QJZ6 481 aa10.59□□□□□ -0.71
SF3A1-208ENST00000485618 ERVV-1B6SEH8 477 aa10.59□□□□□ -0.71
SF3A1-208ENST00000485618 HSP90AB3PQ58FF7 597 aa10.59□□□□□ -0.71
SF3A1-208ENST00000485618 NECTIN2Q92692 538 aa10.59□□□□□ -0.71
SF3A1-208ENST00000485618 COL15A1P39059 1388 aa10.59□□□□□ -0.71
SF3A1-208ENST00000485618 C10orf71Q711Q0 1435 aa10.58□□□□□ -0.72
SF3A1-208ENST00000485618 NPHP1O15259 732 aa10.58□□□□□ -0.72
SF3A1-208ENST00000485618 USPL1Q5W0Q7 1092 aa10.58□□□□□ -0.72
SF3A1-208ENST00000485618 SETDB2Q96T68 719 aa10.58□□□□□ -0.72
SF3A1-208ENST00000485618 CHPF2Q9P2E5 772 aa10.58□□□□□ -0.72
SF3A1-208ENST00000485618 TBC1D2BQ9UPU7 963 aa10.58□□□□□ -0.72
SF3A1-208ENST00000485618 PARP3Q9Y6F1 533 aa10.58□□□□□ -0.72
SF3A1-208ENST00000485618 C4AP0C0L4 1744 aa10.58□□□□□ -0.72
SF3A1-208ENST00000485618 COL5A3P25940 1745 aaPredicted RBP10.58□□□□□ -0.72
SF3A1-208ENST00000485618 USP42Q9H9J4 1324 aaKnown RBP10.58□□□□□ -0.72
SF3A1-208ENST00000485618 N4BP2Q86UW6 1770 aaPredicted RBP10.57□□□□□ -0.72
SF3A1-208ENST00000485618 NBPF26B4DH59 902 aa10.57□□□□□ -0.72
SF3A1-208ENST00000485618 VAMP4O75379 141 aa10.57□□□□□ -0.72
SF3A1-208ENST00000485618 SLC4A2P04920 1241 aa10.57□□□□□ -0.72
SF3A1-208ENST00000485618 KRT24Q2M2I5 525 aa10.57□□□□□ -0.72
SF3A1-208ENST00000485618 NBPF10Q6P3W6 841 aaKnown RBP10.57□□□□□ -0.72
SF3A1-208ENST00000485618 COPS6Q7L5N1 327 aa10.57□□□□□ -0.72
SF3A1-208ENST00000485618 TRMT2AQ8IZ69 625 aaKnown RBP10.57□□□□□ -0.72
SF3A1-208ENST00000485618 NBPF15Q8N660 670 aa10.57□□□□□ -0.72
SF3A1-208ENST00000485618 BCS1LQ9Y276 419 aa10.57□□□□□ -0.72
SF3A1-208ENST00000485618 TJP1Q07157 1748 aa10.56□□□□□ -0.72
SF3A1-208ENST00000485618 KIF3CO14782 793 aa10.56□□□□□ -0.72
SF3A1-208ENST00000485618 GYS1P13807 737 aa10.56□□□□□ -0.72
SF3A1-208ENST00000485618 AIMP1Q12904 312 aaKnown RBP10.56□□□□□ -0.72
SF3A1-208ENST00000485618 ANKRD13DQ6ZTN6 518 aa10.56□□□□□ -0.72
SF3A1-208ENST00000485618 TSPYL6Q8N831 410 aa10.56□□□□□ -0.72
SF3A1-208ENST00000485618 MAP3K15Q6ZN16 1313 aa10.56□□□□□ -0.72
SF3A1-208ENST00000485618 A0A0G2JLW4 131 aa10.55□□□□□ -0.72
SF3A1-208ENST00000485618 HSP90B1P14625 803 aaKnown RBP10.55□□□□□ -0.72
SF3A1-208ENST00000485618 GTF2E1P29083 439 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-208ENST00000485618 TGFB2P61812 414 aa10.55□□□□□ -0.72
SF3A1-208ENST00000485618 NEXNQ0ZGT2 675 aa10.55□□□□□ -0.72
SF3A1-208ENST00000485618 ALDH1L2Q3SY69 923 aa10.55□□□□□ -0.72
SF3A1-208ENST00000485618 RIC3Q7Z5B4 369 aa10.55□□□□□ -0.72
SF3A1-208ENST00000485618 PLBD2Q8NHP8 589 aa10.55□□□□□ -0.72
SF3A1-208ENST00000485618 XAGE3Q8WTP9 111 aa10.55□□□□□ -0.72
SF3A1-208ENST00000485618 CDCA7LQ96GN5 454 aa10.55□□□□□ -0.72
SF3A1-208ENST00000485618 NYXQ9GZU5 481 aa10.55□□□□□ -0.72
SF3A1-208ENST00000485618 SPINK5Q9NQ38 1064 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-208ENST00000485618 MYH14Q7Z406 1995 aaKnown RBP10.55□□□□□ -0.72
SF3A1-208ENST00000485618 IPO8O15397 1037 aaKnown RBP10.54□□□□□ -0.72
SF3A1-208ENST00000485618 CAMTA2O94983 1202 aa10.54□□□□□ -0.72
SF3A1-208ENST00000485618 PIP4K2AP48426 406 aaPredicted RBP10.54□□□□□ -0.72
SF3A1-208ENST00000485618 FKBP8Q14318 412 aa10.54□□□□□ -0.72
SF3A1-208ENST00000485618 PDIA6Q15084 440 aa10.54□□□□□ -0.72
SF3A1-208ENST00000485618 PARP10Q53GL7 1025 aa10.54□□□□□ -0.72
SF3A1-208ENST00000485618 TPTE2Q6XPS3 522 aa10.54□□□□□ -0.72
SF3A1-208ENST00000485618 ARHGAP27Q6ZUM4 889 aa10.54□□□□□ -0.72
SF3A1-208ENST00000485618 PPP1R42Q7Z4L9 355 aa10.54□□□□□ -0.72
SF3A1-208ENST00000485618 SRP68Q9UHB9 627 aaKnown RBP10.54□□□□□ -0.72
SF3A1-208ENST00000485618 PDZRN3Q9UPQ7 1066 aa10.54□□□□□ -0.72
SF3A1-208ENST00000485618 BRCA1P38398 1863 aaKnown RBP10.53□□□□□ -0.72
SF3A1-208ENST00000485618 LAMB4A4D0S4 1761 aa10.53□□□□□ -0.72
SF3A1-208ENST00000485618 SLC34A2O95436 690 aa10.53□□□□□ -0.72
SF3A1-208ENST00000485618 DPEP1P16444 411 aa10.53□□□□□ -0.72
SF3A1-208ENST00000485618 TM4SF1P30408 202 aa10.53□□□□□ -0.72
SF3A1-208ENST00000485618 FKBP5Q13451 457 aaPredicted RBP10.53□□□□□ -0.72
SF3A1-208ENST00000485618 GIGYF2Q6Y7W6 1299 aaKnown RBP10.53□□□□□ -0.72
SF3A1-208ENST00000485618 ZBTB3Q9H5J0 574 aa10.53□□□□□ -0.72
SF3A1-208ENST00000485618 NIP7Q9Y221 180 aaKnown RBP eCLIP10.53□□□□□ -0.72
SF3A1-208ENST00000485618 APLP1P51693 650 aa10.52□□□□□ -0.73
SF3A1-208ENST00000485618 ST5P78524 1137 aa10.52□□□□□ -0.73
SF3A1-208ENST00000485618 FLIIQ13045 1269 aa10.52□□□□□ -0.73
SF3A1-208ENST00000485618 TCIRG1Q13488 830 aa10.52□□□□□ -0.73
SF3A1-208ENST00000485618 PROSER3Q2NL68 480 aa10.52□□□□□ -0.73
SF3A1-208ENST00000485618 KSR2Q6VAB6 950 aa10.52□□□□□ -0.73
SF3A1-208ENST00000485618 BICDL1Q6ZP65 573 aa10.52□□□□□ -0.73
SF3A1-208ENST00000485618 TTLL7Q6ZT98 887 aa10.52□□□□□ -0.73
SF3A1-208ENST00000485618 NBPF5PQ86XG9 351 aaPredicted RBP10.52□□□□□ -0.73
SF3A1-208ENST00000485618 YTHDC1Q96MU7 727 aaKnown RBP10.52□□□□□ -0.73
SF3A1-208ENST00000485618 SMC4Q9NTJ3 1288 aa10.52□□□□□ -0.73
SF3A1-208ENST00000485618 CACNA1FO60840 1977 aa10.52□□□□□ -0.73
SF3A1-208ENST00000485618 CARMIL3Q8ND23 1372 aa10.52□□□□□ -0.73
SF3A1-208ENST00000485618 TOMM70O94826 608 aa10.51□□□□□ -0.73
SF3A1-208ENST00000485618 ANXA1P04083 346 aa10.51□□□□□ -0.73
SF3A1-208ENST00000485618 SERPINB2P05120 415 aa10.51□□□□□ -0.73
SF3A1-208ENST00000485618 NFIXQ14938 502 aa10.51□□□□□ -0.73
SF3A1-208ENST00000485618 CNBD1Q8NA66 436 aa10.51□□□□□ -0.73
SF3A1-208ENST00000485618 NMRK2Q9NPI5 230 aa10.51□□□□□ -0.73
SF3A1-208ENST00000485618 PTPRCP08575 1304 aa10.51□□□□□ -0.73
SF3A1-208ENST00000485618 RNF123Q5XPI4 1314 aa10.51□□□□□ -0.73
SF3A1-208ENST00000485618 ARFGEF1Q9Y6D6 1849 aa10.51□□□□□ -0.73
SF3A1-208ENST00000485618 PI4KAP2A4QPH2 592 aa10.5□□□□□ -0.73
SF3A1-208ENST00000485618 TCERG1O14776 1098 aaKnown RBP10.5□□□□□ -0.73
SF3A1-208ENST00000485618 TRIM28Q13263 835 aaKnown RBP10.5□□□□□ -0.73
SF3A1-208ENST00000485618 C9orf131Q5VYM1 1079 aa10.5□□□□□ -0.73
SF3A1-208ENST00000485618 TBC1D9BQ66K14 1250 aa10.5□□□□□ -0.73
SF3A1-208ENST00000485618 LRP10Q7Z4F1 713 aa10.5□□□□□ -0.73
SF3A1-208ENST00000485618 PI4KAP1Q8N8J0 262 aa10.5□□□□□ -0.73
SF3A1-208ENST00000485618 UTP14AQ9BVJ6 771 aaKnown RBP10.5□□□□□ -0.73
SF3A1-208ENST00000485618 API5Q9BZZ5 524 aaKnown RBP10.5□□□□□ -0.73
SF3A1-208ENST00000485618 PHAXQ9H814 394 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms