RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 TTLL7Q6ZT98 887 aa15.39■□□□□ 0.05
VPS13D-204ENST00000469054 COPS6Q7L5N1 327 aa15.39■□□□□ 0.05
VPS13D-204ENST00000469054 HYPKQ9NX55 129 aa15.39■□□□□ 0.05
VPS13D-204ENST00000469054 ZBED9Q6R2W3 1325 aa15.39■□□□□ 0.05
VPS13D-204ENST00000469054 ERVV-1B6SEH8 477 aa15.38■□□□□ 0.05
VPS13D-204ENST00000469054 RGL2O15211 777 aa15.38■□□□□ 0.05
VPS13D-204ENST00000469054 CLEC4GQ6UXB4 293 aa15.38■□□□□ 0.05
VPS13D-204ENST00000469054 KIF6Q6ZMV9 814 aa15.38■□□□□ 0.05
VPS13D-204ENST00000469054 XAGE3Q8WTP9 111 aa15.38■□□□□ 0.05
VPS13D-204ENST00000469054 LAMB4A4D0S4 1761 aa15.38■□□□□ 0.05
VPS13D-204ENST00000469054 MAP3K15Q6ZN16 1313 aa15.38■□□□□ 0.05
VPS13D-204ENST00000469054 TM4SF1P30408 202 aa15.37■□□□□ 0.05
VPS13D-204ENST00000469054 AIMP1Q12904 312 aaKnown RBP15.37■□□□□ 0.05
VPS13D-204ENST00000469054 NFIXQ14938 502 aa15.37■□□□□ 0.05
VPS13D-204ENST00000469054 STK31Q9BXU1 1019 aa15.37■□□□□ 0.05
VPS13D-204ENST00000469054 PPP1R1BQ9UD71 204 aaPredicted RBP15.37■□□□□ 0.05
VPS13D-204ENST00000469054 ZNF652Q9Y2D9 606 aa15.37■□□□□ 0.05
VPS13D-204ENST00000469054 TCERG1O14776 1098 aaKnown RBP15.36■□□□□ 0.05
VPS13D-204ENST00000469054 HLFQ16534 295 aa15.36■□□□□ 0.05
VPS13D-204ENST00000469054 PARP3Q9Y6F1 533 aa15.36■□□□□ 0.05
VPS13D-204ENST00000469054 SLC4A2P04920 1241 aa15.35■□□□□ 0.05
VPS13D-204ENST00000469054 DDR1Q08345 913 aa15.35■□□□□ 0.05
VPS13D-204ENST00000469054 TBC1D9BQ66K14 1250 aa15.35■□□□□ 0.05
VPS13D-204ENST00000469054 BICDL1Q6ZP65 573 aa15.35■□□□□ 0.05
VPS13D-204ENST00000469054 ZBTB3Q9H5J0 574 aa15.35■□□□□ 0.05
VPS13D-204ENST00000469054 PHAXQ9H814 394 aaKnown RBP15.35■□□□□ 0.05
VPS13D-204ENST00000469054 POLRMTO00411 1230 aaKnown RBP15.34■□□□□ 0.05
VPS13D-204ENST00000469054 ANKRD13DQ6ZTN6 518 aa15.34■□□□□ 0.05
VPS13D-204ENST00000469054 SETDB2Q96T68 719 aa15.34■□□□□ 0.05
VPS13D-204ENST00000469054 C4AP0C0L4 1744 aa15.34■□□□□ 0.05
VPS13D-204ENST00000469054 CT47B1P0C2W7 299 aaPredicted RBP15.33■□□□□ 0.04
VPS13D-204ENST00000469054 GIGYF2Q6Y7W6 1299 aaKnown RBP15.33■□□□□ 0.04
VPS13D-204ENST00000469054 PLBD2Q8NHP8 589 aa15.33■□□□□ 0.04
VPS13D-204ENST00000469054 ZNF428Q96B54 188 aa15.33■□□□□ 0.04
VPS13D-204ENST00000469054 LRP5O75197 1615 aa15.32■□□□□ 0.04
VPS13D-204ENST00000469054 SERPINB2P05120 415 aa15.32■□□□□ 0.04
VPS13D-204ENST00000469054 NIP7Q9Y221 180 aaKnown RBP eCLIP15.32■□□□□ 0.04
VPS13D-204ENST00000469054 DDX58O95786 925 aaKnown RBP15.31■□□□□ 0.04
VPS13D-204ENST00000469054 HSP90AB3PQ58FF7 597 aa15.31■□□□□ 0.04
VPS13D-204ENST00000469054 G2E3Q7L622 706 aa15.31■□□□□ 0.04
VPS13D-204ENST00000469054 FHDC1Q9C0D6 1143 aaPredicted RBP15.31■□□□□ 0.04
VPS13D-204ENST00000469054 FLIIQ13045 1269 aa15.3■□□□□ 0.04
VPS13D-204ENST00000469054 TCIRG1Q13488 830 aa15.3■□□□□ 0.04
VPS13D-204ENST00000469054 COL24A1Q17RW2 1714 aa15.3■□□□□ 0.04
VPS13D-204ENST00000469054 RIC3Q7Z5B4 369 aa15.3■□□□□ 0.04
VPS13D-204ENST00000469054 ZNF34Q8IZ26 560 aa15.3■□□□□ 0.04
VPS13D-204ENST00000469054 KLHL34Q8N239 644 aa15.3■□□□□ 0.04
VPS13D-204ENST00000469054 CARMIL3Q8ND23 1372 aa15.3■□□□□ 0.04
VPS13D-204ENST00000469054 SYT17Q9BSW7 474 aa15.3■□□□□ 0.04
VPS13D-204ENST00000469054 CD2APQ9Y5K6 639 aa15.3■□□□□ 0.04
VPS13D-204ENST00000469054 ATP10DQ9P241 1426 aa15.29■□□□□ 0.04
VPS13D-204ENST00000469054 SSH1Q8WYL5 1049 aa15.29■□□□□ 0.04
VPS13D-204ENST00000469054 SRCAPQ6ZRS2 3230 aa15.28■□□□□ 0.04
VPS13D-204ENST00000469054 GPTP24298 496 aa15.28■□□□□ 0.04
VPS13D-204ENST00000469054 ALDH1L2Q3SY69 923 aa15.28■□□□□ 0.04
VPS13D-204ENST00000469054 KSR2Q6VAB6 950 aa15.28■□□□□ 0.04
VPS13D-204ENST00000469054 NBPF5PQ86XG9 351 aaPredicted RBP15.28■□□□□ 0.04
VPS13D-204ENST00000469054 MRPL50Q8N5N7 158 aaKnown RBP15.28■□□□□ 0.04
VPS13D-204ENST00000469054 SCN7AQ01118 1682 aa15.28■□□□□ 0.04
VPS13D-204ENST00000469054 UBN2Q6ZU65 1347 aa15.27■□□□□ 0.04
VPS13D-204ENST00000469054 PI4KAP2A4QPH2 592 aa15.27■□□□□ 0.04
VPS13D-204ENST00000469054 FKBP5Q13451 457 aaPredicted RBP15.27■□□□□ 0.04
VPS13D-204ENST00000469054 PARP10Q53GL7 1025 aa15.27■□□□□ 0.04
VPS13D-204ENST00000469054 PRR5LQ6MZQ0 368 aa15.27■□□□□ 0.04
VPS13D-204ENST00000469054 TPTE2Q6XPS3 522 aa15.27■□□□□ 0.04
VPS13D-204ENST00000469054 PI4KAP1Q8N8J0 262 aa15.27■□□□□ 0.04
VPS13D-204ENST00000469054 MAP3K2Q9Y2U5 619 aa15.27■□□□□ 0.04
VPS13D-204ENST00000469054 FAM177BA6PVY3 158 aa15.26■□□□□ 0.03
VPS13D-204ENST00000469054 NPHP1O15259 732 aa15.26■□□□□ 0.03
VPS13D-204ENST00000469054 SUSD4Q5VX71 490 aa15.26■□□□□ 0.03
VPS13D-204ENST00000469054 CNBD1Q8NA66 436 aa15.26■□□□□ 0.03
VPS13D-204ENST00000469054 YTHDC1Q96MU7 727 aaKnown RBP15.26■□□□□ 0.03
VPS13D-204ENST00000469054 ISCA1Q9BUE6 129 aa15.26■□□□□ 0.03
VPS13D-204ENST00000469054 METTL22Q9BUU2 404 aaPredicted RBP15.26■□□□□ 0.03
VPS13D-204ENST00000469054 BCL2L13Q9BXK5 485 aa15.26■□□□□ 0.03
VPS13D-204ENST00000469054 SMC4Q9NTJ3 1288 aa15.26■□□□□ 0.03
VPS13D-204ENST00000469054 ATP5J2-PTCD1G3V325 749 aa15.25■□□□□ 0.03
VPS13D-204ENST00000469054 RARSP54136 660 aaKnown RBP15.25■□□□□ 0.03
VPS13D-204ENST00000469054 TGFB2P61812 414 aa15.25■□□□□ 0.03
VPS13D-204ENST00000469054 ST5P78524 1137 aa15.25■□□□□ 0.03
VPS13D-204ENST00000469054 TRIM28Q13263 835 aaKnown RBP15.25■□□□□ 0.03
VPS13D-204ENST00000469054 PPP1R42Q7Z4L9 355 aa15.25■□□□□ 0.03
VPS13D-204ENST00000469054 NLRP10Q86W26 655 aa15.25■□□□□ 0.03
VPS13D-204ENST00000469054 MYD88Q99836 296 aa15.25■□□□□ 0.03
VPS13D-204ENST00000469054 NYXQ9GZU5 481 aa15.25■□□□□ 0.03
VPS13D-204ENST00000469054 BCORQ6W2J9 1755 aa15.25■□□□□ 0.03
VPS13D-204ENST00000469054 C10orf71Q711Q0 1435 aa15.25■□□□□ 0.03
VPS13D-204ENST00000469054 ADCY9O60503 1353 aa15.24■□□□□ 0.03
VPS13D-204ENST00000469054 GTF2E1P29083 439 aaPredicted RBP15.24■□□□□ 0.03
VPS13D-204ENST00000469054 BRPF1P55201 1214 aaPredicted RBP15.24■□□□□ 0.03
VPS13D-204ENST00000469054 CCDC24Q8N4L8 307 aa15.24■□□□□ 0.03
VPS13D-204ENST00000469054 NLGN2Q8NFZ4 835 aa15.24■□□□□ 0.03
VPS13D-204ENST00000469054 DNAAF4Q8WXU2 420 aa15.24■□□□□ 0.03
VPS13D-204ENST00000469054 UTP14AQ9BVJ6 771 aaKnown RBP15.24■□□□□ 0.03
VPS13D-204ENST00000469054 NTSR2O95665 410 aa15.23■□□□□ 0.03
VPS13D-204ENST00000469054 NEXNQ0ZGT2 675 aa15.23■□□□□ 0.03
VPS13D-204ENST00000469054 NUTM1Q86Y26 1132 aa15.23■□□□□ 0.03
VPS13D-204ENST00000469054 BRIP1Q9BX63 1249 aa15.23■□□□□ 0.03
VPS13D-204ENST00000469054 IBTKQ9P2D0 1353 aaPredicted RBP15.23■□□□□ 0.03
VPS13D-204ENST00000469054 PTPRCP08575 1304 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms