RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 CASZ1Q86V15 1759 aa12.99□□□□□ -0.33
UPF2-204ENST00000460569 DDX58O95786 925 aaKnown RBP12.98□□□□□ -0.33
UPF2-204ENST00000460569 RFC4P35249 363 aa12.98□□□□□ -0.33
UPF2-204ENST00000460569 BRPF1P55201 1214 aaPredicted RBP12.98□□□□□ -0.33
UPF2-204ENST00000460569 FRAT1Q92837 279 aaPredicted RBP12.98□□□□□ -0.33
UPF2-204ENST00000460569 ARHGEF1Q92888 912 aaKnown RBP12.98□□□□□ -0.33
UPF2-204ENST00000460569 ZBTB3Q9H5J0 574 aa12.98□□□□□ -0.33
UPF2-204ENST00000460569 PTPRCP08575 1304 aa12.97□□□□□ -0.33
UPF2-204ENST00000460569 MAP3K15Q6ZN16 1313 aa12.97□□□□□ -0.33
UPF2-204ENST00000460569 USP42Q9H9J4 1324 aaKnown RBP12.97□□□□□ -0.33
UPF2-204ENST00000460569 ZPR1O75312 459 aa12.97□□□□□ -0.33
UPF2-204ENST00000460569 COL23A1Q86Y22 540 aaPredicted RBP12.97□□□□□ -0.33
UPF2-204ENST00000460569 SRP68Q9UHB9 627 aaKnown RBP12.97□□□□□ -0.33
UPF2-204ENST00000460569 NOB1Q9ULX3 412 aaKnown RBP12.97□□□□□ -0.33
UPF2-204ENST00000460569 ADCY9O60503 1353 aa12.96□□□□□ -0.33
UPF2-204ENST00000460569 CAMTA2O94983 1202 aa12.96□□□□□ -0.33
UPF2-204ENST00000460569 R3HDM1Q15032 1099 aaKnown RBP12.96□□□□□ -0.33
UPF2-204ENST00000460569 ANKRD13DQ6ZTN6 518 aa12.96□□□□□ -0.33
UPF2-204ENST00000460569 RIC3Q7Z5B4 369 aa12.96□□□□□ -0.33
UPF2-204ENST00000460569 PLBD2Q8NHP8 589 aa12.96□□□□□ -0.33
UPF2-204ENST00000460569 NARFQ9UHQ1 456 aa12.96□□□□□ -0.33
UPF2-204ENST00000460569 PI4KAP2A4QPH2 592 aa12.95□□□□□ -0.34
UPF2-204ENST00000460569 PSDA5PKW4 1024 aaPredicted RBP12.95□□□□□ -0.34
UPF2-204ENST00000460569 IPO8O15397 1037 aaKnown RBP12.95□□□□□ -0.34
UPF2-204ENST00000460569 USPL1Q5W0Q7 1092 aa12.95□□□□□ -0.34
UPF2-204ENST00000460569 KSR2Q6VAB6 950 aa12.95□□□□□ -0.34
UPF2-204ENST00000460569 PI4KAP1Q8N8J0 262 aa12.95□□□□□ -0.34
UPF2-204ENST00000460569 ZNF652Q9Y2D9 606 aa12.95□□□□□ -0.34
UPF2-204ENST00000460569 MAP3K2Q9Y2U5 619 aa12.95□□□□□ -0.34
UPF2-204ENST00000460569 PXDNLA1KZ92 1463 aa12.95□□□□□ -0.34
UPF2-204ENST00000460569 COL24A1Q17RW2 1714 aa12.94□□□□□ -0.34
UPF2-204ENST00000460569 ERVV-1B6SEH8 477 aa12.94□□□□□ -0.34
UPF2-204ENST00000460569 F6X3S4 739 aa12.94□□□□□ -0.34
UPF2-204ENST00000460569 ZKSCAN2Q63HK3 967 aa12.94□□□□□ -0.34
UPF2-204ENST00000460569 ATF7IPQ6VMQ6 1270 aa12.94□□□□□ -0.34
UPF2-204ENST00000460569 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.94□□□□□ -0.34
UPF2-204ENST00000460569 API5Q9BZZ5 524 aaKnown RBP12.94□□□□□ -0.34
UPF2-204ENST00000460569 PLIN1O60240 522 aa12.93□□□□□ -0.34
UPF2-204ENST00000460569 TRIM27P14373 513 aa12.93□□□□□ -0.34
UPF2-204ENST00000460569 RRP1P56182 461 aaKnown RBP12.93□□□□□ -0.34
UPF2-204ENST00000460569 HLFQ16534 295 aa12.93□□□□□ -0.34
UPF2-204ENST00000460569 GIGYF2Q6Y7W6 1299 aaKnown RBP12.93□□□□□ -0.34
UPF2-204ENST00000460569 DNAAF4Q8WXU2 420 aa12.93□□□□□ -0.34
UPF2-204ENST00000460569 ARHGAP45Q92619 1136 aa12.93□□□□□ -0.34
UPF2-204ENST00000460569 PDGFDQ9GZP0 370 aaPredicted RBP12.93□□□□□ -0.34
UPF2-204ENST00000460569 TNNQ9UQP3 1299 aa12.93□□□□□ -0.34
UPF2-204ENST00000460569 ATP10DQ9P241 1426 aa12.93□□□□□ -0.34
UPF2-204ENST00000460569 GYS1P13807 737 aa12.92□□□□□ -0.34
UPF2-204ENST00000460569 NEXNQ0ZGT2 675 aa12.92□□□□□ -0.34
UPF2-204ENST00000460569 HSP90AB3PQ58FF7 597 aa12.92□□□□□ -0.34
UPF2-204ENST00000460569 MSL1Q68DK7 614 aa12.92□□□□□ -0.34
UPF2-204ENST00000460569 SLC4A10Q6U841 1118 aa12.92□□□□□ -0.34
UPF2-204ENST00000460569 FTSJ3Q8IY81 847 aaKnown RBP12.92□□□□□ -0.34
UPF2-204ENST00000460569 CLUAP1Q96AJ1 413 aa12.92□□□□□ -0.34
UPF2-204ENST00000460569 MYD88Q99836 296 aa12.92□□□□□ -0.34
UPF2-204ENST00000460569 METTL22Q9BUU2 404 aaPredicted RBP12.92□□□□□ -0.34
UPF2-204ENST00000460569 BCL2L12Q9HB09 334 aa12.92□□□□□ -0.34
UPF2-204ENST00000460569 RGL2O15211 777 aa12.91□□□□□ -0.34
UPF2-204ENST00000460569 GPTP24298 496 aa12.91□□□□□ -0.34
UPF2-204ENST00000460569 FKBP8Q14318 412 aa12.91□□□□□ -0.34
UPF2-204ENST00000460569 CLEC4GQ6UXB4 293 aa12.91□□□□□ -0.34
UPF2-204ENST00000460569 SUPT16HQ9Y5B9 1047 aaKnown RBP12.91□□□□□ -0.34
UPF2-204ENST00000460569 ABCC4O15439 1325 aa12.9□□□□□ -0.34
UPF2-204ENST00000460569 ATP5J2-PTCD1G3V325 749 aa12.9□□□□□ -0.34
UPF2-204ENST00000460569 TCIRG1Q13488 830 aa12.9□□□□□ -0.34
UPF2-204ENST00000460569 TBC1D9BQ66K14 1250 aa12.9□□□□□ -0.34
UPF2-204ENST00000460569 BICDL1Q6ZP65 573 aa12.9□□□□□ -0.34
UPF2-204ENST00000460569 DZIP1LQ8IYY4 767 aaKnown RBP12.9□□□□□ -0.34
UPF2-204ENST00000460569 SLC16A10Q8TF71 515 aa12.9□□□□□ -0.34
UPF2-204ENST00000460569 NIP7Q9Y221 180 aaKnown RBP eCLIP12.9□□□□□ -0.34
UPF2-204ENST00000460569 ZBTB7AO95365 584 aa12.89□□□□□ -0.35
UPF2-204ENST00000460569 MS4A1P11836 297 aa12.89□□□□□ -0.35
UPF2-204ENST00000460569 CWF19L2Q2TBE0 894 aaKnown RBP12.89□□□□□ -0.35
UPF2-204ENST00000460569 NLGN1Q8N2Q7 840 aa12.89□□□□□ -0.35
UPF2-204ENST00000460569 CARMIL3Q8ND23 1372 aa12.89□□□□□ -0.35
UPF2-204ENST00000460569 UBN2Q6ZU65 1347 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 IGKV5-2P06315 115 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 RLBP1P12271 317 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 CCT4P50991 539 aaKnown RBP12.88□□□□□ -0.35
UPF2-204ENST00000460569 NFIXQ14938 502 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 BEND3Q5T5X7 828 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 ZNF34Q8IZ26 560 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 LINS1Q8NG48 757 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 PANK1Q8TE04 598 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 SETDB2Q96T68 719 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 ISCA1Q9BUE6 129 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 SRCIN1Q9C0H9 1055 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 LAMB2P55268 1798 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 NRXN2Q9P2S2 1712 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 RNF123Q5XPI4 1314 aa12.88□□□□□ -0.35
UPF2-204ENST00000460569 FAM177BA6PVY3 158 aa12.87□□□□□ -0.35
UPF2-204ENST00000460569 NEURL1BA8MQ27 555 aa12.87□□□□□ -0.35
UPF2-204ENST00000460569 MMP10P09238 476 aa12.87□□□□□ -0.35
UPF2-204ENST00000460569 PARP10Q53GL7 1025 aa12.87□□□□□ -0.35
UPF2-204ENST00000460569 C20orf194Q5TEA3 1177 aa12.87□□□□□ -0.35
UPF2-204ENST00000460569 NLRP10Q86W26 655 aa12.87□□□□□ -0.35
UPF2-204ENST00000460569 TMEM57Q8N5G2 664 aa12.87□□□□□ -0.35
UPF2-204ENST00000460569 MTFR1LQ9H019 292 aa12.87□□□□□ -0.35
UPF2-204ENST00000460569 CWC25Q9NXE8 425 aaPredicted RBP12.87□□□□□ -0.35
UPF2-204ENST00000460569 ALDH1L1O75891 902 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms