RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 ZNF652Q9Y2D9 606 aa23.46■■□□□ 1.35
HDAC6-208ENST00000438518 NUP98P52948 1817 aa23.45■■□□□ 1.34
HDAC6-208ENST00000438518 ZPR1O75312 459 aa23.45■■□□□ 1.34
HDAC6-208ENST00000438518 FKBP5Q13451 457 aaPredicted RBP23.45■■□□□ 1.34
HDAC6-208ENST00000438518 ANKRD13DQ6ZTN6 518 aa23.45■■□□□ 1.34
HDAC6-208ENST00000438518 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.45■■□□□ 1.34
HDAC6-208ENST00000438518 N4BP2Q86UW6 1770 aaPredicted RBP23.45■■□□□ 1.34
HDAC6-208ENST00000438518 CASZ1Q86V15 1759 aa23.45■■□□□ 1.34
HDAC6-208ENST00000438518 PXDNLA1KZ92 1463 aa23.44■■□□□ 1.34
HDAC6-208ENST00000438518 BCAR3O75815 825 aa23.44■■□□□ 1.34
HDAC6-208ENST00000438518 AIMP1Q12904 312 aaKnown RBP23.44■■□□□ 1.34
HDAC6-208ENST00000438518 CLEC4GQ6UXB4 293 aa23.44■■□□□ 1.34
HDAC6-208ENST00000438518 G2E3Q7L622 706 aa23.44■■□□□ 1.34
HDAC6-208ENST00000438518 AMIGO3Q86WK7 504 aa23.44■■□□□ 1.34
HDAC6-208ENST00000438518 SLC16A10Q8TF71 515 aa23.44■■□□□ 1.34
HDAC6-208ENST00000438518 API5Q9BZZ5 524 aaKnown RBP23.44■■□□□ 1.34
HDAC6-208ENST00000438518 HSP90AB3PQ58FF7 597 aa23.43■■□□□ 1.34
HDAC6-208ENST00000438518 KSR2Q6VAB6 950 aa23.43■■□□□ 1.34
HDAC6-208ENST00000438518 TTLL7Q6ZT98 887 aa23.43■■□□□ 1.34
HDAC6-208ENST00000438518 COL23A1Q86Y22 540 aaPredicted RBP23.43■■□□□ 1.34
HDAC6-208ENST00000438518 CAMTA2O94983 1202 aa23.42■■□□□ 1.34
HDAC6-208ENST00000438518 ARXQ96QS3 562 aa23.42■■□□□ 1.34
HDAC6-208ENST00000438518 TBC1D2BQ9UPU7 963 aa23.42■■□□□ 1.34
HDAC6-208ENST00000438518 MS4A1P11836 297 aa23.41■■□□□ 1.34
HDAC6-208ENST00000438518 ZKSCAN2Q63HK3 967 aa23.41■■□□□ 1.34
HDAC6-208ENST00000438518 RIC3Q7Z5B4 369 aa23.41■■□□□ 1.34
HDAC6-208ENST00000438518 NOB1Q9ULX3 412 aaKnown RBP23.41■■□□□ 1.34
HDAC6-208ENST00000438518 ATP10DQ9P241 1426 aa23.41■■□□□ 1.34
HDAC6-208ENST00000438518 ATF7IPQ6VMQ6 1270 aa23.4■■□□□ 1.34
HDAC6-208ENST00000438518 GIGYF2Q6Y7W6 1299 aaKnown RBP23.4■■□□□ 1.34
HDAC6-208ENST00000438518 ADCY9O60503 1353 aa23.4■■□□□ 1.34
HDAC6-208ENST00000438518 PI4KAP2A4QPH2 592 aa23.39■■□□□ 1.33
HDAC6-208ENST00000438518 USPL1Q5W0Q7 1092 aa23.39■■□□□ 1.33
HDAC6-208ENST00000438518 PI4KAP1Q8N8J0 262 aa23.39■■□□□ 1.33
HDAC6-208ENST00000438518 ZBTB3Q9H5J0 574 aa23.39■■□□□ 1.33
HDAC6-208ENST00000438518 COL24A1Q17RW2 1714 aa23.39■■□□□ 1.33
HDAC6-208ENST00000438518 MSH5O43196 834 aa23.38■■□□□ 1.33
HDAC6-208ENST00000438518 NEXNQ0ZGT2 675 aa23.38■■□□□ 1.33
HDAC6-208ENST00000438518 NLGN1Q8N2Q7 840 aa23.38■■□□□ 1.33
HDAC6-208ENST00000438518 DNAAF4Q8WXU2 420 aa23.38■■□□□ 1.33
HDAC6-208ENST00000438518 FRAT1Q92837 279 aaPredicted RBP23.38■■□□□ 1.33
HDAC6-208ENST00000438518 MAP3K2Q9Y2U5 619 aa23.38■■□□□ 1.33
HDAC6-208ENST00000438518 IBTKQ9P2D0 1353 aaPredicted RBP23.38■■□□□ 1.33
HDAC6-208ENST00000438518 GYS1P13807 737 aa23.37■■□□□ 1.33
HDAC6-208ENST00000438518 R3HDM1Q15032 1099 aaKnown RBP23.37■■□□□ 1.33
HDAC6-208ENST00000438518 METTL22Q9BUU2 404 aaPredicted RBP23.37■■□□□ 1.33
HDAC6-208ENST00000438518 AFDNP55196 1824 aaKnown RBP23.36■■□□□ 1.33
HDAC6-208ENST00000438518 TCIRG1Q13488 830 aa23.36■■□□□ 1.33
HDAC6-208ENST00000438518 SMIM5Q71RC9 77 aa23.36■■□□□ 1.33
HDAC6-208ENST00000438518 SRP68Q9UHB9 627 aaKnown RBP23.36■■□□□ 1.33
HDAC6-208ENST00000438518 TRIM27P14373 513 aa23.35■■□□□ 1.33
HDAC6-208ENST00000438518 BCL2L12Q9HB09 334 aa23.35■■□□□ 1.33
HDAC6-208ENST00000438518 ABCC4O15439 1325 aa23.34■■□□□ 1.33
HDAC6-208ENST00000438518 TRIM28Q13263 835 aaKnown RBP23.34■■□□□ 1.33
HDAC6-208ENST00000438518 HLFQ16534 295 aa23.34■■□□□ 1.33
HDAC6-208ENST00000438518 RNF123Q5XPI4 1314 aa23.33■■□□□ 1.33
HDAC6-208ENST00000438518 RRP1P56182 461 aaKnown RBP23.33■■□□□ 1.33
HDAC6-208ENST00000438518 PARP10Q53GL7 1025 aa23.33■■□□□ 1.33
HDAC6-208ENST00000438518 LINS1Q8NG48 757 aa23.33■■□□□ 1.33
HDAC6-208ENST00000438518 CCT4P50991 539 aaKnown RBP23.32■■□□□ 1.32
HDAC6-208ENST00000438518 PDE3AQ14432 1141 aa23.32■■□□□ 1.32
HDAC6-208ENST00000438518 FTSJ3Q8IY81 847 aaKnown RBP23.32■■□□□ 1.32
HDAC6-208ENST00000438518 ZNF34Q8IZ26 560 aa23.32■■□□□ 1.32
HDAC6-208ENST00000438518 ISCA1Q9BUE6 129 aa23.32■■□□□ 1.32
HDAC6-208ENST00000438518 MTFR1LQ9H019 292 aa23.32■■□□□ 1.32
HDAC6-208ENST00000438518 CARMIL3Q8ND23 1372 aa23.31■■□□□ 1.32
HDAC6-208ENST00000438518 FKBP8Q14318 412 aa23.31■■□□□ 1.32
HDAC6-208ENST00000438518 DZIP1LQ8IYY4 767 aaKnown RBP23.31■■□□□ 1.32
HDAC6-208ENST00000438518 MYD88Q99836 296 aa23.31■■□□□ 1.32
HDAC6-208ENST00000438518 F6X3S4 739 aa23.3■■□□□ 1.32
HDAC6-208ENST00000438518 ALDH1L1O75891 902 aa23.3■■□□□ 1.32
HDAC6-208ENST00000438518 SLC4A10Q6U841 1118 aa23.3■■□□□ 1.32
HDAC6-208ENST00000438518 CCDC191Q8NCU4 936 aa23.3■■□□□ 1.32
HDAC6-208ENST00000438518 SETDB2Q96T68 719 aa23.3■■□□□ 1.32
HDAC6-208ENST00000438518 NIP7Q9Y221 180 aaKnown RBP eCLIP23.3■■□□□ 1.32
HDAC6-208ENST00000438518 BEND3Q5T5X7 828 aa23.29■■□□□ 1.32
HDAC6-208ENST00000438518 TBC1D9BQ66K14 1250 aa23.29■■□□□ 1.32
HDAC6-208ENST00000438518 INTS3Q68E01 1043 aaKnown RBP23.29■■□□□ 1.32
HDAC6-208ENST00000438518 SRCIN1Q9C0H9 1055 aa23.29■■□□□ 1.32
HDAC6-208ENST00000438518 NRXN2Q9P2S2 1712 aa23.28■■□□□ 1.32
HDAC6-208ENST00000438518 PSDA5PKW4 1024 aaPredicted RBP23.28■■□□□ 1.32
HDAC6-208ENST00000438518 TM4SF1P30408 202 aa23.28■■□□□ 1.32
HDAC6-208ENST00000438518 PPP1R42Q7Z4L9 355 aa23.28■■□□□ 1.32
HDAC6-208ENST00000438518 NFIXQ14938 502 aa23.27■■□□□ 1.32
HDAC6-208ENST00000438518 NYXQ9GZU5 481 aa23.27■■□□□ 1.32
HDAC6-208ENST00000438518 CWC25Q9NXE8 425 aaPredicted RBP23.27■■□□□ 1.32
HDAC6-208ENST00000438518 NEURL1BA8MQ27 555 aa23.26■■□□□ 1.31
HDAC6-208ENST00000438518 IGKV5-2P06315 115 aa23.26■■□□□ 1.31
HDAC6-208ENST00000438518 NLRP10Q86W26 655 aa23.26■■□□□ 1.31
HDAC6-208ENST00000438518 PDGFDQ9GZP0 370 aaPredicted RBP23.26■■□□□ 1.31
HDAC6-208ENST00000438518 SUPT16HQ9Y5B9 1047 aaKnown RBP23.26■■□□□ 1.31
HDAC6-208ENST00000438518 UBN2Q6ZU65 1347 aa23.26■■□□□ 1.31
HDAC6-208ENST00000438518 CLUAP1Q96AJ1 413 aa23.25■■□□□ 1.31
HDAC6-208ENST00000438518 LAMB2P55268 1798 aa23.24■■□□□ 1.31
HDAC6-208ENST00000438518 ATP5J2-PTCD1G3V325 749 aa23.24■■□□□ 1.31
HDAC6-208ENST00000438518 PLIN1O60240 522 aa23.24■■□□□ 1.31
HDAC6-208ENST00000438518 GPTP24298 496 aa23.24■■□□□ 1.31
HDAC6-208ENST00000438518 CHMP4BQ9H444 224 aaKnown RBP23.24■■□□□ 1.31
HDAC6-208ENST00000438518 PARP3Q9Y6F1 533 aa23.24■■□□□ 1.31
HDAC6-208ENST00000438518 POLRMTO00411 1230 aaKnown RBP23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms