RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ADGRL3Q9HAR2 1447 aa14.24□□□□□ -0.13
CD44-209ENST00000433892 ALDH1L1O75891 902 aa14.24□□□□□ -0.13
CD44-209ENST00000433892 USP48Q86UV5 1035 aa14.24□□□□□ -0.13
CD44-209ENST00000433892 PDLIM2Q96JY6 352 aa14.24□□□□□ -0.13
CD44-209ENST00000433892 IFIT2P09913 472 aaKnown RBP14.24□□□□□ -0.13
CD44-209ENST00000433892 CASTP20810 708 aaKnown RBP14.24□□□□□ -0.13
CD44-209ENST00000433892 MSNP26038 577 aaKnown RBP14.24□□□□□ -0.13
CD44-209ENST00000433892 AIMP1Q12904 312 aaKnown RBP14.24□□□□□ -0.13
CD44-209ENST00000433892 ECHDC1Q9NTX5 307 aa14.24□□□□□ -0.13
CD44-209ENST00000433892 LIMCH1Q9UPQ0 1083 aa14.24□□□□□ -0.13
CD44-209ENST00000433892 AXIN2Q9Y2T1 843 aa14.24□□□□□ -0.13
CD44-209ENST00000433892 RPAP1Q9BWH6 1393 aaPredicted RBP14.23□□□□□ -0.13
CD44-209ENST00000433892 PTH1RQ03431 593 aa14.23□□□□□ -0.13
CD44-209ENST00000433892 AACSQ86V21 672 aa14.22□□□□□ -0.13
CD44-209ENST00000433892 DTNBO60941 627 aa14.22□□□□□ -0.13
CD44-209ENST00000433892 RUFY2Q8WXA3 655 aa14.22□□□□□ -0.13
CD44-209ENST00000433892 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.22□□□□□ -0.13
CD44-209ENST00000433892 HEG1Q9ULI3 1381 aa14.21□□□□□ -0.13
CD44-209ENST00000433892 GRM8O00222 908 aa14.21□□□□□ -0.13
CD44-209ENST00000433892 ADCK5Q3MIX3 580 aa14.21□□□□□ -0.13
CD44-209ENST00000433892 TPRNQ4KMQ1 711 aa14.21□□□□□ -0.13
CD44-209ENST00000433892 PRPF40BQ6NWY9 871 aaKnown RBP14.21□□□□□ -0.13
CD44-209ENST00000433892 ERC1Q8IUD2 1116 aa14.21□□□□□ -0.13
CD44-209ENST00000433892 GPATCH3Q96I76 525 aa14.21□□□□□ -0.13
CD44-209ENST00000433892 SUCLG2Q96I99 432 aa14.21□□□□□ -0.13
CD44-209ENST00000433892 HYPKQ9NX55 129 aa14.21□□□□□ -0.13
CD44-209ENST00000433892 NCAPD2Q15021 1401 aa14.21□□□□□ -0.13
CD44-209ENST00000433892 LARGE1O95461 756 aa14.21□□□□□ -0.14
CD44-209ENST00000433892 ZSCAN22P10073 491 aaPredicted RBP14.21□□□□□ -0.14
CD44-209ENST00000433892 SYT1P21579 422 aa14.21□□□□□ -0.14
CD44-209ENST00000433892 HS1BP3Q53T59 392 aa14.21□□□□□ -0.14
CD44-209ENST00000433892 LINS1Q8NG48 757 aa14.21□□□□□ -0.14
CD44-209ENST00000433892 SYAP1Q96A49 352 aaPredicted RBP14.21□□□□□ -0.14
CD44-209ENST00000433892 KAZALD1Q96I82 304 aa14.21□□□□□ -0.14
CD44-209ENST00000433892 JAKMIP1Q96N16 626 aaKnown RBP14.21□□□□□ -0.14
CD44-209ENST00000433892 BICC1Q9H694 974 aaKnown RBP14.21□□□□□ -0.14
CD44-209ENST00000433892 PHRF1Q9P1Y6 1649 aaKnown RBP14.2□□□□□ -0.14
CD44-209ENST00000433892 TSPY26PQ9H489 355 aa14.2□□□□□ -0.14
CD44-209ENST00000433892 SMC3Q9UQE7 1217 aa14.2□□□□□ -0.14
CD44-209ENST00000433892 CNPY2Q9Y2B0 182 aa14.2□□□□□ -0.14
CD44-209ENST00000433892 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.2□□□□□ -0.14
CD44-209ENST00000433892 STX6O43752 255 aa14.2□□□□□ -0.14
CD44-209ENST00000433892 SASH1O94885 1247 aa14.2□□□□□ -0.14
CD44-209ENST00000433892 DDX54Q8TDD1 881 aaKnown RBP14.2□□□□□ -0.14
CD44-209ENST00000433892 CCDC8Q9H0W5 538 aaPredicted RBP14.2□□□□□ -0.14
CD44-209ENST00000433892 NOL7Q9UMY1 257 aaKnown RBP14.2□□□□□ -0.14
CD44-209ENST00000433892 HDAC5Q9UQL6 1122 aa14.2□□□□□ -0.14
CD44-209ENST00000433892 CRYBG1Q9Y4K1 1723 aa14.2□□□□□ -0.14
CD44-209ENST00000433892 TCHHQ07283 1943 aa14.19□□□□□ -0.14
CD44-209ENST00000433892 SLC39A6Q13433 755 aa14.19□□□□□ -0.14
CD44-209ENST00000433892 CCDC83Q8IWF9 413 aa14.19□□□□□ -0.14
CD44-209ENST00000433892 EAF2Q96CJ1 260 aaPredicted RBP14.19□□□□□ -0.14
CD44-209ENST00000433892 EVI5LQ96CN4 794 aa14.19□□□□□ -0.14
CD44-209ENST00000433892 SIL1Q9H173 461 aa14.19□□□□□ -0.14
CD44-209ENST00000433892 DDX21Q9NR30 783 aaKnown RBP eCLIP14.19□□□□□ -0.14
CD44-209ENST00000433892 PDRG1Q9NUG6 133 aa14.19□□□□□ -0.14
CD44-209ENST00000433892 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.19□□□□□ -0.14
CD44-209ENST00000433892 DDX58O95786 925 aaKnown RBP14.18□□□□□ -0.14
CD44-209ENST00000433892 G3BP1Q13283 466 aaKnown RBP eCLIP14.18□□□□□ -0.14
CD44-209ENST00000433892 PDIA6Q15084 440 aa14.18□□□□□ -0.14
CD44-209ENST00000433892 FAM227BQ96M60 508 aa14.18□□□□□ -0.14
CD44-209ENST00000433892 OVOS2A0A0G2JMS6 1433 aa14.18□□□□□ -0.14
CD44-209ENST00000433892 ZC3H6P61129 1189 aaKnown RBP14.18□□□□□ -0.14
CD44-209ENST00000433892 TLR7Q9NYK1 1049 aaKnown RBP14.18□□□□□ -0.14
CD44-209ENST00000433892 PHF14O94880 888 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 IGKV5-2P06315 115 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 MYL6BP14649 208 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 TRHP20396 242 aaPredicted RBP14.17□□□□□ -0.14
CD44-209ENST00000433892 VPS53Q5VIR6 699 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 RIC3Q7Z5B4 369 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 KLHDC4Q8TBB5 520 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 ZSWIM6Q9HCJ5 1215 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 CYP46A1Q9Y6A2 500 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 CCDC171Q6TFL3 1326 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 SLIT3O75094 1523 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 GJB2P29033 226 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 KCNJ4P48050 445 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 NECTIN1Q15223 517 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 KRT28Q7Z3Y7 464 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 TMEM87AQ8NBN3 555 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 UTYO14607 1347 aa14.17□□□□□ -0.14
CD44-209ENST00000433892 OFD1O75665 1012 aa14.16□□□□□ -0.14
CD44-209ENST00000433892 F13A1P00488 732 aa14.16□□□□□ -0.14
CD44-209ENST00000433892 NMIQ13287 307 aaPredicted RBP14.16□□□□□ -0.14
CD44-209ENST00000433892 ZNF790Q6PG37 636 aa14.16□□□□□ -0.14
CD44-209ENST00000433892 BOLA2Q9H3K6 86 aa14.16□□□□□ -0.14
CD44-209ENST00000433892 RBM8AQ9Y5S9 174 aaKnown RBP14.16□□□□□ -0.14
CD44-209ENST00000433892 FIBPO43427 364 aa14.16□□□□□ -0.14
CD44-209ENST00000433892 PRKCSHP14314 528 aaPredicted RBP14.16□□□□□ -0.14
CD44-209ENST00000433892 ZKSCAN1P17029 563 aaPredicted RBP14.16□□□□□ -0.14
CD44-209ENST00000433892 KCNB2Q92953 911 aa14.16□□□□□ -0.14
CD44-209ENST00000433892 TM6SF1Q9BZW5 370 aa14.16□□□□□ -0.14
CD44-209ENST00000433892 COL9A3Q14050 684 aaPredicted RBP14.15□□□□□ -0.14
CD44-209ENST00000433892 CREB3L3Q68CJ9 461 aa14.15□□□□□ -0.14
CD44-209ENST00000433892 NECAB1Q8N987 351 aa14.15□□□□□ -0.14
CD44-209ENST00000433892 ZKSCAN5Q9Y2L8 839 aa14.15□□□□□ -0.14
CD44-209ENST00000433892 ERBB3P21860 1342 aa14.15□□□□□ -0.14
CD44-209ENST00000433892 ME3Q16798 604 aa14.15□□□□□ -0.14
CD44-209ENST00000433892 NFATC2IPQ8NCF5 419 aa14.15□□□□□ -0.14
CD44-209ENST00000433892 MAP4K1Q92918 833 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 144.8 ms