RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 UVSSAQ2YD98 709 aa13.6□□□□□ -0.23
USP4-205ENST00000431357 ZNF530Q6P9A1 599 aaPredicted RBP13.6□□□□□ -0.23
USP4-205ENST00000431357 USP48Q86UV5 1035 aa13.6□□□□□ -0.23
USP4-205ENST00000431357 FAM184AQ8NB25 1140 aa13.6□□□□□ -0.23
USP4-205ENST00000431357 DIAPH3Q9NSV4 1193 aa13.6□□□□□ -0.23
USP4-205ENST00000431357 ZKSCAN5Q9Y2L8 839 aa13.6□□□□□ -0.23
USP4-205ENST00000431357 ZSCAN22P10073 491 aaPredicted RBP13.59□□□□□ -0.23
USP4-205ENST00000431357 ZSCAN31Q96LW9 406 aaPredicted RBP13.59□□□□□ -0.23
USP4-205ENST00000431357 TM6SF1Q9BZW5 370 aa13.59□□□□□ -0.23
USP4-205ENST00000431357 ECHDC1Q9NTX5 307 aa13.59□□□□□ -0.23
USP4-205ENST00000431357 RPAP1Q9BWH6 1393 aaPredicted RBP13.59□□□□□ -0.23
USP4-205ENST00000431357 AK2P54819 239 aa13.58□□□□□ -0.23
USP4-205ENST00000431357 CSPP1Q1MSJ5 1256 aa13.58□□□□□ -0.23
USP4-205ENST00000431357 KSR2Q6VAB6 950 aa13.58□□□□□ -0.23
USP4-205ENST00000431357 KCNB2Q92953 911 aa13.58□□□□□ -0.23
USP4-205ENST00000431357 HIP1O00291 1037 aa13.58□□□□□ -0.24
USP4-205ENST00000431357 RNMTO43148 476 aaKnown RBP13.58□□□□□ -0.24
USP4-205ENST00000431357 PSME1Q06323 249 aa13.58□□□□□ -0.24
USP4-205ENST00000431357 C1orf141Q5JVX7 400 aa13.58□□□□□ -0.24
USP4-205ENST00000431357 CWC27Q6UX04 472 aaKnown RBP13.58□□□□□ -0.24
USP4-205ENST00000431357 C9orf78Q9NZ63 289 aaPredicted RBP13.58□□□□□ -0.24
USP4-205ENST00000431357 SMC3Q9UQE7 1217 aa13.58□□□□□ -0.24
USP4-205ENST00000431357 KCNQ3O43525 872 aa13.57□□□□□ -0.24
USP4-205ENST00000431357 STX6O43752 255 aa13.57□□□□□ -0.24
USP4-205ENST00000431357 VPS53Q5VIR6 699 aa13.57□□□□□ -0.24
USP4-205ENST00000431357 RASEFQ8IZ41 740 aa13.57□□□□□ -0.24
USP4-205ENST00000431357 EVI5LQ96CN4 794 aa13.57□□□□□ -0.24
USP4-205ENST00000431357 SH2B1Q9NRF2 756 aaPredicted RBP13.57□□□□□ -0.24
USP4-205ENST00000431357 IFIT2P09913 472 aaKnown RBP13.57□□□□□ -0.24
USP4-205ENST00000431357 CCDC183Q5T5S1 534 aa13.57□□□□□ -0.24
USP4-205ENST00000431357 RUFY3Q7L099 469 aa13.57□□□□□ -0.24
USP4-205ENST00000431357 HYPKQ9NX55 129 aa13.57□□□□□ -0.24
USP4-205ENST00000431357 HEG1Q9ULI3 1381 aa13.56□□□□□ -0.24
USP4-205ENST00000431357 CHD2O14647 1828 aaKnown RBP13.56□□□□□ -0.24
USP4-205ENST00000431357 GADD45BO75293 160 aaPredicted RBP13.56□□□□□ -0.24
USP4-205ENST00000431357 GIGYF1O75420 1035 aaPredicted RBP13.56□□□□□ -0.24
USP4-205ENST00000431357 UBE2HP62256 183 aa13.56□□□□□ -0.24
USP4-205ENST00000431357 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.56□□□□□ -0.24
USP4-205ENST00000431357 MAP3K2Q9Y2U5 619 aa13.56□□□□□ -0.24
USP4-205ENST00000431357 LMTK3Q96Q04 1460 aa13.56□□□□□ -0.24
USP4-205ENST00000431357 DDX58O95786 925 aaKnown RBP13.55□□□□□ -0.24
USP4-205ENST00000431357 F13A1P00488 732 aa13.55□□□□□ -0.24
USP4-205ENST00000431357 SYT1P21579 422 aa13.55□□□□□ -0.24
USP4-205ENST00000431357 MPRIPQ6WCQ1 1025 aa13.55□□□□□ -0.24
USP4-205ENST00000431357 ZSWIM6Q9HCJ5 1215 aa13.55□□□□□ -0.24
USP4-205ENST00000431357 UTYO14607 1347 aa13.55□□□□□ -0.24
USP4-205ENST00000431357 CASTP20810 708 aaKnown RBP13.55□□□□□ -0.24
USP4-205ENST00000431357 ANKLE2Q86XL3 938 aa13.55□□□□□ -0.24
USP4-205ENST00000431357 LINS1Q8NG48 757 aa13.55□□□□□ -0.24
USP4-205ENST00000431357 PDRG1Q9NUG6 133 aa13.55□□□□□ -0.24
USP4-205ENST00000431357 SPG7Q9UQ90 795 aa13.55□□□□□ -0.24
USP4-205ENST00000431357 CYP46A1Q9Y6A2 500 aa13.55□□□□□ -0.24
USP4-205ENST00000431357 ZKSCAN1P17029 563 aaPredicted RBP13.54□□□□□ -0.24
USP4-205ENST00000431357 RNF214Q8ND24 703 aa13.54□□□□□ -0.24
USP4-205ENST00000431357 GDPD2Q9HCC8 539 aa13.54□□□□□ -0.24
USP4-205ENST00000431357 A0A0U1RQG5 324 aaPredicted RBP13.54□□□□□ -0.24
USP4-205ENST00000431357 ANXA1P04083 346 aa13.54□□□□□ -0.24
USP4-205ENST00000431357 ESCO1Q5FWF5 840 aa13.54□□□□□ -0.24
USP4-205ENST00000431357 ARHGEF25Q86VW2 580 aa13.54□□□□□ -0.24
USP4-205ENST00000431357 DNAJC5Q9H3Z4 198 aa13.54□□□□□ -0.24
USP4-205ENST00000431357 G3BP1Q13283 466 aaKnown RBP eCLIP13.53□□□□□ -0.24
USP4-205ENST00000431357 NECTIN1Q15223 517 aa13.53□□□□□ -0.24
USP4-205ENST00000431357 LRRC59Q96AG4 307 aaKnown RBP13.53□□□□□ -0.24
USP4-205ENST00000431357 JAKMIP1Q96N16 626 aaKnown RBP13.53□□□□□ -0.24
USP4-205ENST00000431357 SNRKQ9NRH2 765 aa13.53□□□□□ -0.24
USP4-205ENST00000431357 CNPY2Q9Y2B0 182 aa13.53□□□□□ -0.24
USP4-205ENST00000431357 SLIT3O75094 1523 aa13.53□□□□□ -0.24
USP4-205ENST00000431357 CCDC171Q6TFL3 1326 aa13.53□□□□□ -0.24
USP4-205ENST00000431357 ZBTB7CA1YPR0 619 aa13.52□□□□□ -0.24
USP4-205ENST00000431357 GRM8O00222 908 aa13.52□□□□□ -0.24
USP4-205ENST00000431357 PSMA5P28066 241 aa13.52□□□□□ -0.24
USP4-205ENST00000431357 PTH1RQ03431 593 aa13.52□□□□□ -0.24
USP4-205ENST00000431357 FOXD4L6Q3SYB3 417 aaPredicted RBP13.52□□□□□ -0.24
USP4-205ENST00000431357 FOXD4L3Q6VB84 417 aaPredicted RBP13.52□□□□□ -0.24
USP4-205ENST00000431357 AACSQ86V21 672 aa13.52□□□□□ -0.24
USP4-205ENST00000431357 DDX21Q9NR30 783 aaKnown RBP eCLIP13.52□□□□□ -0.24
USP4-205ENST00000431357 GCP02774 474 aa13.52□□□□□ -0.25
USP4-205ENST00000431357 PTMAP06454 111 aaKnown RBP13.52□□□□□ -0.25
USP4-205ENST00000431357 TAF7LQ5H9L4 462 aa13.52□□□□□ -0.25
USP4-205ENST00000431357 PRPF40BQ6NWY9 871 aaKnown RBP13.52□□□□□ -0.25
USP4-205ENST00000431357 GJB2P29033 226 aa13.51□□□□□ -0.25
USP4-205ENST00000431357 RGPD2P0DJD1 1756 aa13.51□□□□□ -0.25
USP4-205ENST00000431357 CCDC83Q8IWF9 413 aa13.51□□□□□ -0.25
USP4-205ENST00000431357 ANKRD24Q8TF21 1146 aa13.51□□□□□ -0.25
USP4-205ENST00000431357 MAP4K1Q92918 833 aa13.51□□□□□ -0.25
USP4-205ENST00000431357 ALDH8A1Q9H2A2 487 aaPredicted RBP13.51□□□□□ -0.25
USP4-205ENST00000431357 PDCL3Q9H2J4 239 aa13.51□□□□□ -0.25
USP4-205ENST00000431357 PA2G4Q9UQ80 394 aaKnown RBP13.51□□□□□ -0.25
USP4-205ENST00000431357 MTMR6Q9Y217 621 aa13.51□□□□□ -0.25
USP4-205ENST00000431357 PXDNQ92626 1479 aa13.51□□□□□ -0.25
USP4-205ENST00000431357 CAMTA1Q9Y6Y1 1673 aa13.51□□□□□ -0.25
USP4-205ENST00000431357 ANKRD1Q15327 319 aa13.5□□□□□ -0.25
USP4-205ENST00000431357 PROSER3Q2NL68 480 aa13.5□□□□□ -0.25
USP4-205ENST00000431357 RNF20Q5VTR2 975 aa13.5□□□□□ -0.25
USP4-205ENST00000431357 SUCLG2Q96I99 432 aa13.5□□□□□ -0.25
USP4-205ENST00000431357 R3HCC1Q9Y3T6 440 aaKnown RBP13.5□□□□□ -0.25
USP4-205ENST00000431357 RBM8AQ9Y5S9 174 aaKnown RBP13.5□□□□□ -0.25
USP4-205ENST00000431357 KCNJ4P48050 445 aa13.49□□□□□ -0.25
USP4-205ENST00000431357 XPCQ01831 940 aaPredicted RBP13.49□□□□□ -0.25
USP4-205ENST00000431357 CWF19L2Q2TBE0 894 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms