RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 EXOSC9Q06265 439 aaKnown RBP28.92■■■□□ 2.22
PTCD3-203ENST00000409783 TWISTNBQ3B726 338 aaPredicted RBP28.92■■■□□ 2.22
PTCD3-203ENST00000409783 CLEC4GQ6UXB4 293 aa28.92■■■□□ 2.22
PTCD3-203ENST00000409783 DBF4Q9UBU7 674 aaPredicted RBP28.92■■■□□ 2.22
PTCD3-203ENST00000409783 HLFQ16534 295 aa28.91■■■□□ 2.22
PTCD3-203ENST00000409783 PARP3Q9Y6F1 533 aa28.91■■■□□ 2.22
PTCD3-203ENST00000409783 MAP3K15Q6ZN16 1313 aa28.91■■■□□ 2.22
PTCD3-203ENST00000409783 ERVV-1B6SEH8 477 aa28.9■■■□□ 2.22
PTCD3-203ENST00000409783 SLFN5Q08AF3 891 aa28.9■■■□□ 2.22
PTCD3-203ENST00000409783 COPS6Q7L5N1 327 aa28.89■■■□□ 2.22
PTCD3-203ENST00000409783 XAGE3Q8WTP9 111 aa28.89■■■□□ 2.22
PTCD3-203ENST00000409783 CDCA7LQ96GN5 454 aa28.89■■■□□ 2.22
PTCD3-203ENST00000409783 C10orf71Q711Q0 1435 aa28.88■■■□□ 2.21
PTCD3-203ENST00000409783 E9PSI1 815 aa28.88■■■□□ 2.21
PTCD3-203ENST00000409783 VAMP4O75379 141 aa28.88■■■□□ 2.21
PTCD3-203ENST00000409783 BICDL1Q6ZP65 573 aa28.88■■■□□ 2.21
PTCD3-203ENST00000409783 CD2APQ9Y5K6 639 aa28.88■■■□□ 2.21
PTCD3-203ENST00000409783 CCDC30Q5VVM6 783 aa28.87■■■□□ 2.21
PTCD3-203ENST00000409783 KIF6Q6ZMV9 814 aa28.87■■■□□ 2.21
PTCD3-203ENST00000409783 TRMT2AQ8IZ69 625 aaKnown RBP28.87■■■□□ 2.21
PTCD3-203ENST00000409783 HYPKQ9NX55 129 aa28.87■■■□□ 2.21
PTCD3-203ENST00000409783 KIAA1551Q9HCM1 1747 aa28.86■■■□□ 2.21
PTCD3-203ENST00000409783 KLHL34Q8N239 644 aa28.86■■■□□ 2.21
PTCD3-203ENST00000409783 ZBTB3Q9H5J0 574 aa28.86■■■□□ 2.21
PTCD3-203ENST00000409783 ZNF652Q9Y2D9 606 aa28.86■■■□□ 2.21
PTCD3-203ENST00000409783 SERPINB2P05120 415 aa28.85■■■□□ 2.21
PTCD3-203ENST00000409783 NLGN2Q8NFZ4 835 aa28.85■■■□□ 2.21
PTCD3-203ENST00000409783 CHMP4AQ9BY43 222 aa28.85■■■□□ 2.21
PTCD3-203ENST00000409783 AIMP1Q12904 312 aaKnown RBP28.84■■■□□ 2.21
PTCD3-203ENST00000409783 CARMIL3Q8ND23 1372 aa28.84■■■□□ 2.21
PTCD3-203ENST00000409783 ATP10DQ9P241 1426 aa28.84■■■□□ 2.21
PTCD3-203ENST00000409783 CACNA1FO60840 1977 aa28.83■■■□□ 2.21
PTCD3-203ENST00000409783 HNRNPUQ00839 825 aaKnown RBP eCLIP28.83■■■□□ 2.21
PTCD3-203ENST00000409783 GIGYF2Q6Y7W6 1299 aaKnown RBP28.83■■■□□ 2.21
PTCD3-203ENST00000409783 SETDB2Q96T68 719 aa28.83■■■□□ 2.21
PTCD3-203ENST00000409783 PHAXQ9H814 394 aaKnown RBP28.83■■■□□ 2.21
PTCD3-203ENST00000409783 ANKRD36CQ5JPF3 1778 aa28.82■■■□□ 2.2
PTCD3-203ENST00000409783 TCERG1O14776 1098 aaKnown RBP28.81■■■□□ 2.2
PTCD3-203ENST00000409783 NIP7Q9Y221 180 aaKnown RBP eCLIP28.8■■■□□ 2.2
PTCD3-203ENST00000409783 ZNF34Q8IZ26 560 aa28.79■■■□□ 2.2
PTCD3-203ENST00000409783 ARFGEF2Q9Y6D5 1785 aa28.79■■■□□ 2.2
PTCD3-203ENST00000409783 ANKRD31Q8N7Z5 1873 aa28.78■■■□□ 2.2
PTCD3-203ENST00000409783 N4BP2Q86UW6 1770 aaPredicted RBP28.78■■■□□ 2.2
PTCD3-203ENST00000409783 ANKRD13DQ6ZTN6 518 aa28.78■■■□□ 2.2
PTCD3-203ENST00000409783 PLBD2Q8NHP8 589 aa28.78■■■□□ 2.2
PTCD3-203ENST00000409783 PXDNLA1KZ92 1463 aa28.78■■■□□ 2.2
PTCD3-203ENST00000409783 UBN2Q6ZU65 1347 aa28.77■■■□□ 2.2
PTCD3-203ENST00000409783 PRR5LQ6MZQ0 368 aa28.77■■■□□ 2.2
PTCD3-203ENST00000409783 STK31Q9BXU1 1019 aa28.77■■■□□ 2.2
PTCD3-203ENST00000409783 G2E3Q7L622 706 aa28.76■■■□□ 2.19
PTCD3-203ENST00000409783 SLC4A2P04920 1241 aa28.75■■■□□ 2.19
PTCD3-203ENST00000409783 TGFB2P61812 414 aa28.75■■■□□ 2.19
PTCD3-203ENST00000409783 GPTP24298 496 aa28.74■■■□□ 2.19
PTCD3-203ENST00000409783 BRCA1P38398 1863 aaKnown RBP28.73■■■□□ 2.19
PTCD3-203ENST00000409783 TCIRG1Q13488 830 aa28.73■■■□□ 2.19
PTCD3-203ENST00000409783 ZBED9Q6R2W3 1325 aa28.72■■■□□ 2.19
PTCD3-203ENST00000409783 NBPF5PQ86XG9 351 aaPredicted RBP28.72■■■□□ 2.19
PTCD3-203ENST00000409783 CCDC24Q8N4L8 307 aa28.72■■■□□ 2.19
PTCD3-203ENST00000409783 CNBD1Q8NA66 436 aa28.72■■■□□ 2.19
PTCD3-203ENST00000409783 KCNA3P22001 575 aa28.71■■■□□ 2.19
PTCD3-203ENST00000409783 HSP90AB3PQ58FF7 597 aa28.71■■■□□ 2.19
PTCD3-203ENST00000409783 SUSD4Q5VX71 490 aa28.71■■■□□ 2.19
PTCD3-203ENST00000409783 IBTKQ9P2D0 1353 aaPredicted RBP28.71■■■□□ 2.19
PTCD3-203ENST00000409783 A0A0G2JLW4 131 aa28.7■■■□□ 2.18
PTCD3-203ENST00000409783 DPEP1P16444 411 aa28.7■■■□□ 2.18
PTCD3-203ENST00000409783 FAM177BA6PVY3 158 aa28.69■■■□□ 2.18
PTCD3-203ENST00000409783 PARP10Q53GL7 1025 aa28.69■■■□□ 2.18
PTCD3-203ENST00000409783 TPTE2Q6XPS3 522 aa28.69■■■□□ 2.18
PTCD3-203ENST00000409783 ISCA1Q9BUE6 129 aa28.69■■■□□ 2.18
PTCD3-203ENST00000409783 BRIP1Q9BX63 1249 aa28.69■■■□□ 2.18
PTCD3-203ENST00000409783 ADCY9O60503 1353 aa28.69■■■□□ 2.18
PTCD3-203ENST00000409783 DLEC1Q9Y238 1755 aa28.69■■■□□ 2.18
PTCD3-203ENST00000409783 NTSR2O95665 410 aa28.68■■■□□ 2.18
PTCD3-203ENST00000409783 FLIIQ13045 1269 aa28.68■■■□□ 2.18
PTCD3-203ENST00000409783 RIC3Q7Z5B4 369 aa28.68■■■□□ 2.18
PTCD3-203ENST00000409783 NLRP10Q86W26 655 aa28.68■■■□□ 2.18
PTCD3-203ENST00000409783 COL11A2P13942 1736 aaPredicted RBP28.67■■■□□ 2.18
PTCD3-203ENST00000409783 CHRNA5P30532 468 aa28.67■■■□□ 2.18
PTCD3-203ENST00000409783 KSR2Q6VAB6 950 aa28.67■■■□□ 2.18
PTCD3-203ENST00000409783 DDX58O95786 925 aaKnown RBP28.66■■■□□ 2.18
PTCD3-203ENST00000409783 ST5P78524 1137 aa28.66■■■□□ 2.18
PTCD3-203ENST00000409783 NYXQ9GZU5 481 aa28.66■■■□□ 2.18
PTCD3-203ENST00000409783 ABCC12Q96J65 1359 aa28.65■■■□□ 2.18
PTCD3-203ENST00000409783 PI4KAP2A4QPH2 592 aa28.65■■■□□ 2.18
PTCD3-203ENST00000409783 TRIM28Q13263 835 aaKnown RBP28.65■■■□□ 2.18
PTCD3-203ENST00000409783 NUTM1Q86Y26 1132 aa28.65■■■□□ 2.18
PTCD3-203ENST00000409783 PI4KAP1Q8N8J0 262 aa28.65■■■□□ 2.18
PTCD3-203ENST00000409783 ZNF428Q96B54 188 aa28.65■■■□□ 2.18
PTCD3-203ENST00000409783 MAP3K2Q9Y2U5 619 aa28.65■■■□□ 2.18
PTCD3-203ENST00000409783 TNRC6CQ9HCJ0 1690 aaKnown RBP28.64■■■□□ 2.18
PTCD3-203ENST00000409783 ATP5J2-PTCD1G3V325 749 aa28.64■■■□□ 2.18
PTCD3-203ENST00000409783 CT47B1P0C2W7 299 aaPredicted RBP28.64■■■□□ 2.18
PTCD3-203ENST00000409783 METTL22Q9BUU2 404 aaPredicted RBP28.64■■■□□ 2.18
PTCD3-203ENST00000409783 YBX3P16989 372 aaKnown RBP eCLIP28.63■■■□□ 2.17
PTCD3-203ENST00000409783 ERFEQ4G0M1 354 aa28.63■■■□□ 2.17
PTCD3-203ENST00000409783 PPP1R42Q7Z4L9 355 aa28.63■■■□□ 2.17
PTCD3-203ENST00000409783 MRPL50Q8N5N7 158 aaKnown RBP28.63■■■□□ 2.17
PTCD3-203ENST00000409783 SSH1Q8WYL5 1049 aa28.63■■■□□ 2.17
PTCD3-203ENST00000409783 RIC1Q4ADV7 1423 aa28.62■■■□□ 2.17
PTCD3-203ENST00000409783 KLRG2A4D1S0 409 aaPredicted RBP28.62■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms