RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 SSH3Q8TE77 659 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 DNM1Q05193 864 aaKnown RBP5.87□□□□□ -1.47
SMAD4-202ENST00000398417 FAM227BQ96M60 508 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 ZCCHC11Q5TAX3 1644 aaKnown RBP5.87□□□□□ -1.47
SMAD4-202ENST00000398417 TLR7Q9NYK1 1049 aaKnown RBP5.87□□□□□ -1.47
SMAD4-202ENST00000398417 ADGRB1O14514 1584 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 TSPOAP1O95153 1857 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 ZBTB3Q9H5J0 574 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 SYT1P21579 422 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 CKAP2LQ8IYA6 745 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 DDX17Q92841 729 aaKnown RBP5.87□□□□□ -1.47
SMAD4-202ENST00000398417 EVI5LQ96CN4 794 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 CPS1P31327 1500 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 SGSM2O43147 1006 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 ZNF592Q92610 1267 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 SNRKQ9NRH2 765 aa5.87□□□□□ -1.47
SMAD4-202ENST00000398417 LETM1O95202 739 aaPredicted RBP5.86□□□□□ -1.47
SMAD4-202ENST00000398417 GCP02774 474 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 HSPA4P34932 840 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 TFCP2Q12800 502 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 OSBPL3Q9H4L5 887 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 ARHGEF10O15013 1369 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 HCLS1P14317 486 aaPredicted RBP5.86□□□□□ -1.47
SMAD4-202ENST00000398417 ZNF445P59923 1031 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 ANAPC15P60006 121 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 SF3A1Q15459 793 aaKnown RBP5.86□□□□□ -1.47
SMAD4-202ENST00000398417 C17orf53Q8N3J3 647 aaPredicted RBP5.86□□□□□ -1.47
SMAD4-202ENST00000398417 SPATA32Q96LK8 384 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 PTPRMP28827 1452 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 GOLGA6L6A8MZA4 724 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 SASS6Q6UVJ0 657 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 PPP1R9BQ96SB3 815 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 LSG1Q9H089 658 aaKnown RBP5.86□□□□□ -1.47
SMAD4-202ENST00000398417 ABCA6Q8N139 1617 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 OFD1O75665 1012 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 AMOTQ4VCS5 1084 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 CCDC183Q5T5S1 534 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 BRF1Q92994 677 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 NUP62CLQ9H1M0 184 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 CRB1P82279 1406 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 CREB3L3Q68CJ9 461 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 TTC39AQ5SRH9 613 aa5.86□□□□□ -1.47
SMAD4-202ENST00000398417 BICC1Q9H694 974 aaKnown RBP5.86□□□□□ -1.47
SMAD4-202ENST00000398417 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.86□□□□□ -1.474e-6■□□□□ 8.8
SMAD4-202ENST00000398417 COL3A1P02461 1466 aaPredicted RBP5.85□□□□□ -1.47
SMAD4-202ENST00000398417 ADCY5O95622 1261 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 ADCK5Q3MIX3 580 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 LARP1Q6PKG0 1096 aaKnown RBP5.85□□□□□ -1.47
SMAD4-202ENST00000398417 HIP1O00291 1037 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 SEC62Q99442 399 aaKnown RBP5.85□□□□□ -1.47
SMAD4-202ENST00000398417 TNMDQ9H2S6 317 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 IBTKQ9P2D0 1353 aaPredicted RBP5.85□□□□□ -1.47
SMAD4-202ENST00000398417 A0A087WZG4 1122 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 ATF3P18847 181 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 LMBR1LQ6UX01 489 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 RUFY3Q7L099 469 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 STRN4Q9NRL3 753 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 STAP2Q9UGK3 403 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 CD163L1Q9NR16 1453 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 DDX46Q7L014 1031 aaKnown RBP5.85□□□□□ -1.47
SMAD4-202ENST00000398417 AK7Q96M32 723 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 DBNDD2Q9BQY9 259 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 CPSF1Q10570 1443 aaKnown RBP5.85□□□□□ -1.47
SMAD4-202ENST00000398417 CCT2P78371 535 aaKnown RBP5.85□□□□□ -1.47
SMAD4-202ENST00000398417 PLEKHG1Q9ULL1 1385 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 SLC27A2O14975 620 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 KRT85P78386 507 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 USP6P35125 1406 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 VWDEQ8N2E2 1590 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 ATP7BP35670 1465 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 MAP3K4Q9Y6R4 1608 aa5.85□□□□□ -1.47
SMAD4-202ENST00000398417 EAF2Q96CJ1 260 aaPredicted RBP5.84□□□□□ -1.47
SMAD4-202ENST00000398417 CYP2E1P05181 493 aaPredicted RBP5.84□□□□□ -1.47
SMAD4-202ENST00000398417 GNL2Q13823 731 aaKnown RBP5.84□□□□□ -1.47
SMAD4-202ENST00000398417 IFNL2Q8IZJ0 200 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 LINS1Q8NG48 757 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 TTC12Q9H892 705 aaPredicted RBP5.84□□□□□ -1.47
SMAD4-202ENST00000398417 ZKSCAN5Q9Y2L8 839 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 NLRP1Q9C000 1473 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 BECN2A8MW95 431 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 CHAF1AQ13111 956 aaPredicted RBP5.84□□□□□ -1.47
SMAD4-202ENST00000398417 CUL4AQ13619 759 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 PI4K2BQ8TCG2 481 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 TRIM5Q9C035 493 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 CROCC2H7BZ55 1655 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 POLA2Q14181 598 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 UVSSAQ2YD98 709 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 OTUD7BQ6GQQ9 843 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 NEK1Q96PY6 1258 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 HYPKQ9NX55 129 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 EVA1CP58658 441 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 FRMPD1Q5SYB0 1578 aa5.84□□□□□ -1.47
SMAD4-202ENST00000398417 HMGB1P1B2RPK0 211 aaPredicted RBP5.84□□□□□ -1.48
SMAD4-202ENST00000398417 GOLIM4O00461 696 aa5.84□□□□□ -1.48
SMAD4-202ENST00000398417 INTS4Q96HW7 963 aaKnown RBP5.84□□□□□ -1.48
SMAD4-202ENST00000398417 SH2B1Q9NRF2 756 aaPredicted RBP5.84□□□□□ -1.48
SMAD4-202ENST00000398417 IFIT1P09914 478 aaKnown RBP5.84□□□□□ -1.48
SMAD4-202ENST00000398417 TOM1L2Q6ZVM7 507 aa5.84□□□□□ -1.48
SMAD4-202ENST00000398417 MED14O60244 1454 aa5.84□□□□□ -1.48
SMAD4-202ENST00000398417 HSP90AB3PQ58FF7 597 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms