RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 A0A0G2JLW4 131 aa10.01□□□□□ -0.81
LIMS1-203ENST00000393310 PABPC4Q13310 644 aaKnown RBP eCLIP10.01□□□□□ -0.81
LIMS1-203ENST00000393310 AEBP1Q8IUX7 1158 aa10.01□□□□□ -0.81
LIMS1-203ENST00000393310 USHBP1Q8N6Y0 703 aa10.01□□□□□ -0.81
LIMS1-203ENST00000393310 TULP4Q9NRJ4 1543 aa10.01□□□□□ -0.81
LIMS1-203ENST00000393310 GLRX3O76003 335 aaKnown RBP10.01□□□□□ -0.81
LIMS1-203ENST00000393310 TEX2Q8IWB9 1127 aa10.01□□□□□ -0.81
LIMS1-203ENST00000393310 NKX2-3Q8TAU0 364 aa10.01□□□□□ -0.81
LIMS1-203ENST00000393310 CREBZFQ9NS37 354 aa10.01□□□□□ -0.81
LIMS1-203ENST00000393310 IGSF3O75054 1194 aa10□□□□□ -0.81
LIMS1-203ENST00000393310 EPHX2P34913 555 aa10□□□□□ -0.81
LIMS1-203ENST00000393310 COL23A1Q86Y22 540 aaPredicted RBP10□□□□□ -0.81
LIMS1-203ENST00000393310 PLCD3Q8N3E9 789 aa10□□□□□ -0.81
LIMS1-203ENST00000393310 ERO1AQ96HE7 468 aa10□□□□□ -0.81
LIMS1-203ENST00000393310 MCCP23508 829 aa10□□□□□ -0.81
LIMS1-203ENST00000393310 HUNKP57058 714 aa10□□□□□ -0.81
LIMS1-203ENST00000393310 GPR101Q96P66 508 aaPredicted RBP10□□□□□ -0.81
LIMS1-203ENST00000393310 RBM19Q9Y4C8 960 aaKnown RBP10□□□□□ -0.81
LIMS1-203ENST00000393310 KIF1BO60333 1816 aa10□□□□□ -0.81
LIMS1-203ENST00000393310 LBHD1Q9BQE6 289 aaPredicted RBP10□□□□□ -0.81
LIMS1-203ENST00000393310 MTIF3Q9H2K0 278 aaKnown RBP10□□□□□ -0.81
LIMS1-203ENST00000393310 NOP58Q9Y2X3 529 aaKnown RBP10□□□□□ -0.81
LIMS1-203ENST00000393310 LRP6O75581 1613 aa10□□□□□ -0.81
LIMS1-203ENST00000393310 UBR1Q8IWV7 1749 aa10□□□□□ -0.81
LIMS1-203ENST00000393310 EIF2S2P20042 333 aaKnown RBP10□□□□□ -0.81
LIMS1-203ENST00000393310 ZNF157P51786 506 aaPredicted RBP10□□□□□ -0.81
LIMS1-203ENST00000393310 SPRYD3Q8NCJ5 442 aa10□□□□□ -0.81
LIMS1-203ENST00000393310 PLEKHH1Q9ULM0 1364 aa10□□□□□ -0.81
LIMS1-203ENST00000393310 MMP14P50281 582 aa9.99□□□□□ -0.81
LIMS1-203ENST00000393310 INTS3Q68E01 1043 aaKnown RBP9.99□□□□□ -0.81
LIMS1-203ENST00000393310 UTP14AQ9BVJ6 771 aaKnown RBP9.99□□□□□ -0.81
LIMS1-203ENST00000393310 CAPN2P17655 700 aa9.99□□□□□ -0.81
LIMS1-203ENST00000393310 MAP2K2P36507 400 aa9.99□□□□□ -0.81
LIMS1-203ENST00000393310 STYK1Q6J9G0 422 aa9.99□□□□□ -0.81
LIMS1-203ENST00000393310 TRMT112Q9UI30 125 aaKnown RBP9.99□□□□□ -0.81
LIMS1-203ENST00000393310 ALKQ9UM73 1620 aa9.99□□□□□ -0.81
LIMS1-203ENST00000393310 BCL9LQ86UU0 1499 aa9.99□□□□□ -0.81
LIMS1-203ENST00000393310 SETBP1Q9Y6X0 1596 aa9.98□□□□□ -0.81
LIMS1-203ENST00000393310 ATF7IPQ6VMQ6 1270 aa9.98□□□□□ -0.81
LIMS1-203ENST00000393310 SLC10A4Q96EP9 437 aa9.98□□□□□ -0.81
LIMS1-203ENST00000393310 CPSF1Q10570 1443 aaKnown RBP9.98□□□□□ -0.81
LIMS1-203ENST00000393310 PTPRUQ92729 1446 aa9.98□□□□□ -0.81
LIMS1-203ENST00000393310 IREB2P48200 963 aaKnown RBP9.98□□□□□ -0.81
LIMS1-203ENST00000393310 DCAF15Q66K64 600 aa9.98□□□□□ -0.81
LIMS1-203ENST00000393310 TSPYL4Q9UJ04 414 aa9.98□□□□□ -0.81
LIMS1-203ENST00000393310 NSD2O96028 1365 aa9.97□□□□□ -0.81
LIMS1-203ENST00000393310 DISP2A7MBM2 1401 aa9.97□□□□□ -0.81
LIMS1-203ENST00000393310 BBOX1O75936 387 aa9.97□□□□□ -0.81
LIMS1-203ENST00000393310 USP50Q70EL3 339 aaPredicted RBP9.97□□□□□ -0.81
LIMS1-203ENST00000393310 SLC5A4Q9NY91 659 aa9.97□□□□□ -0.81
LIMS1-203ENST00000393310 NARFQ9UHQ1 456 aa9.97□□□□□ -0.81
LIMS1-203ENST00000393310 C21orf2O43822 256 aa9.97□□□□□ -0.81
LIMS1-203ENST00000393310 CELF2O95319 508 aaKnown RBP9.97□□□□□ -0.81
LIMS1-203ENST00000393310 CCDC152Q4G0S7 254 aa9.97□□□□□ -0.81
LIMS1-203ENST00000393310 USPL1Q5W0Q7 1092 aa9.97□□□□□ -0.81
LIMS1-203ENST00000393310 KCTD17Q8N5Z5 321 aa9.96□□□□□ -0.81
LIMS1-203ENST00000393310 DPF3Q92784 378 aa9.96□□□□□ -0.81
LIMS1-203ENST00000393310 MAP3K19Q56UN5 1328 aa9.96□□□□□ -0.81
LIMS1-203ENST00000393310 INHBEP58166 350 aa9.96□□□□□ -0.82
LIMS1-203ENST00000393310 VPS33BQ9H267 617 aa9.96□□□□□ -0.82
LIMS1-203ENST00000393310 ADARB2Q9NS39 739 aaKnown RBP9.96□□□□□ -0.82
LIMS1-203ENST00000393310 SHPRHQ149N8 1683 aa9.96□□□□□ -0.82
LIMS1-203ENST00000393310 NEXMIFQ5QGS0 1516 aa9.96□□□□□ -0.82
LIMS1-203ENST00000393310 CRKLP46109 303 aaKnown RBP9.96□□□□□ -0.82
LIMS1-203ENST00000393310 TNS2Q63HR2 1409 aa9.95□□□□□ -0.82
LIMS1-203ENST00000393310 CNTROBQ8N137 903 aa9.95□□□□□ -0.82
LIMS1-203ENST00000393310 SETD1AO15047 1707 aaKnown RBP9.95□□□□□ -0.82
LIMS1-203ENST00000393310 IARSP41252 1262 aaKnown RBP9.95□□□□□ -0.82
LIMS1-203ENST00000393310 CRBNQ96SW2 442 aa9.95□□□□□ -0.82
LIMS1-203ENST00000393310 CAPNS2Q96L46 248 aa9.95□□□□□ -0.82
LIMS1-203ENST00000393310 ANKRD2Q9GZV1 360 aa9.95□□□□□ -0.82
LIMS1-203ENST00000393310 CNTNAP4Q9C0A0 1308 aa9.94□□□□□ -0.82
LIMS1-203ENST00000393310 CLEC4GQ6UXB4 293 aa9.94□□□□□ -0.82
LIMS1-203ENST00000393310 KRT26Q7Z3Y9 468 aa9.94□□□□□ -0.82
LIMS1-203ENST00000393310 NMRK2Q9NPI5 230 aa9.94□□□□□ -0.82
LIMS1-203ENST00000393310 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.94□□□□□ -0.82
LIMS1-203ENST00000393310 RPS12P25398 132 aaKnown RBP9.94□□□□□ -0.82
LIMS1-203ENST00000393310 IL6STP40189 918 aaPredicted RBP9.94□□□□□ -0.82
LIMS1-203ENST00000393310 CTU1Q7Z7A3 348 aaKnown RBP9.94□□□□□ -0.82
LIMS1-203ENST00000393310 ZSCAN29Q8IWY8 852 aaPredicted RBP9.94□□□□□ -0.82
LIMS1-203ENST00000393310 NSFL1CQ9UNZ2 370 aaKnown RBP9.94□□□□□ -0.82
LIMS1-203ENST00000393310 FKBP4Q02790 459 aaKnown RBP eCLIP9.94□□□□□ -0.82
LIMS1-203ENST00000393310 MAPK8IP2Q13387 824 aaPredicted RBP9.94□□□□□ -0.82
LIMS1-203ENST00000393310 MAP7D2Q96T17 732 aa9.94□□□□□ -0.82
LIMS1-203ENST00000393310 SYNE4Q8N205 404 aa9.93□□□□□ -0.82
LIMS1-203ENST00000393310 CARMIL3Q8ND23 1372 aa9.93□□□□□ -0.82
LIMS1-203ENST00000393310 MAST3O60307 1309 aa9.93□□□□□ -0.82
LIMS1-203ENST00000393310 HMGB1P1B2RPK0 211 aaPredicted RBP9.93□□□□□ -0.82
LIMS1-203ENST00000393310 ANKRD18AQ8IVF6 992 aa9.93□□□□□ -0.82
LIMS1-203ENST00000393310 MYO3BQ8WXR4 1341 aa9.93□□□□□ -0.82
LIMS1-203ENST00000393310 GCC2Q8IWJ2 1684 aa9.93□□□□□ -0.82
LIMS1-203ENST00000393310 PDE3AQ14432 1141 aa9.93□□□□□ -0.82
LIMS1-203ENST00000393310 BRPF3Q9ULD4 1205 aa9.93□□□□□ -0.82
LIMS1-203ENST00000393310 FMNL1O95466 1100 aaPredicted RBP9.93□□□□□ -0.82
LIMS1-203ENST00000393310 NFE2L2Q16236 605 aa9.93□□□□□ -0.82
LIMS1-203ENST00000393310 APOBEC3FQ8IUX4 373 aaKnown RBP9.93□□□□□ -0.82
LIMS1-203ENST00000393310 ARHGEF1Q92888 912 aaKnown RBP9.93□□□□□ -0.82
LIMS1-203ENST00000393310 GGA1Q9UJY5 639 aa9.93□□□□□ -0.82
LIMS1-203ENST00000393310 TBC1D2BQ9UPU7 963 aa9.93□□□□□ -0.82
LIMS1-203ENST00000393310 NFATC2IPQ8NCF5 419 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms