RNA–Protein interactions for RNA: ENST00000368530.6

TPM3-210, Transcript of tropomyosin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TPM3, Length 1,523 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-210ENST00000368530 BRIP1Q9BX63 1249 aa13.08□□□□□ -0.31
TPM3-210ENST00000368530 ADAMTS8Q9UP79 889 aa13.08□□□□□ -0.31
TPM3-210ENST00000368530 TBC1D2BQ9UPU7 963 aa13.08□□□□□ -0.31
TPM3-210ENST00000368530 TNRC6CQ9HCJ0 1690 aaKnown RBP13.08□□□□□ -0.32
TPM3-210ENST00000368530 A0A087WZG4 1122 aa13.08□□□□□ -0.32
TPM3-210ENST00000368530 KCNQ3O43525 872 aa13.08□□□□□ -0.32
TPM3-210ENST00000368530 IL6STP40189 918 aaPredicted RBP13.08□□□□□ -0.32
TPM3-210ENST00000368530 PRR5LQ6MZQ0 368 aa13.08□□□□□ -0.32
TPM3-210ENST00000368530 TTC5Q8N0Z6 440 aa13.08□□□□□ -0.32
TPM3-210ENST00000368530 SMC1BQ8NDV3 1235 aa13.08□□□□□ -0.32
TPM3-210ENST00000368530 TEX13AQ9BXU3 409 aaPredicted RBP13.08□□□□□ -0.32
TPM3-210ENST00000368530 CAMTA2O94983 1202 aa13.07□□□□□ -0.32
TPM3-210ENST00000368530 A1BGP04217 495 aa13.07□□□□□ -0.32
TPM3-210ENST00000368530 VEGFAP15692 232 aaPredicted RBP13.07□□□□□ -0.32
TPM3-210ENST00000368530 TEFQ10587 303 aa13.07□□□□□ -0.32
TPM3-210ENST00000368530 CCDC24Q8N4L8 307 aa13.07□□□□□ -0.32
TPM3-210ENST00000368530 GAS2L2Q8NHY3 880 aa13.07□□□□□ -0.32
TPM3-210ENST00000368530 U2SURPO15042 1029 aaKnown RBP13.06□□□□□ -0.32
TPM3-210ENST00000368530 COL13A1Q5TAT6 717 aaPredicted RBP13.06□□□□□ -0.32
TPM3-210ENST00000368530 ANKRD31Q8N7Z5 1873 aa13.06□□□□□ -0.32
TPM3-210ENST00000368530 PCNTO95613 3336 aa13.06□□□□□ -0.32
TPM3-210ENST00000368530 SIPA1L3O60292 1781 aaPredicted RBP13.06□□□□□ -0.32
TPM3-210ENST00000368530 C21orf2O43822 256 aa13.05□□□□□ -0.32
TPM3-210ENST00000368530 RSPH6AQ9H0K4 717 aa13.05□□□□□ -0.32
TPM3-210ENST00000368530 PDE6BP35913 854 aa13.04□□□□□ -0.32
TPM3-210ENST00000368530 CCDC146Q8IYE0 955 aa13.04□□□□□ -0.32
TPM3-210ENST00000368530 ZNF622Q969S3 477 aaKnown RBP eCLIP13.04□□□□□ -0.322e-8■■□□□ 13.1
TPM3-210ENST00000368530 FMNL2Q96PY5 1086 aa13.04□□□□□ -0.32
TPM3-210ENST00000368530 PDZRN3Q9UPQ7 1066 aa13.04□□□□□ -0.32
TPM3-210ENST00000368530 USP16Q9Y5T5 823 aa13.04□□□□□ -0.32
TPM3-210ENST00000368530 PRAMEF22A3QJZ6 481 aa13.03□□□□□ -0.32
TPM3-210ENST00000368530 SUPT16HQ9Y5B9 1047 aaKnown RBP13.03□□□□□ -0.32
TPM3-210ENST00000368530 SCN7AQ01118 1682 aa13.03□□□□□ -0.32
TPM3-210ENST00000368530 LTBP3Q9NS15 1303 aa13.03□□□□□ -0.32
TPM3-210ENST00000368530 SRGNP10124 158 aa13.03□□□□□ -0.32
TPM3-210ENST00000368530 PRKAR2BP31323 418 aa13.03□□□□□ -0.32
TPM3-210ENST00000368530 C7orf43Q8WVR3 580 aa13.03□□□□□ -0.32
TPM3-210ENST00000368530 CFAP53Q96M91 514 aa13.03□□□□□ -0.32
TPM3-210ENST00000368530 COL11A2P13942 1736 aaPredicted RBP13.02□□□□□ -0.33
TPM3-210ENST00000368530 BTBD11A6QL63 1104 aa13.02□□□□□ -0.33
TPM3-210ENST00000368530 NEFLP07196 543 aa13.02□□□□□ -0.33
TPM3-210ENST00000368530 PIP4K2AP48426 406 aaPredicted RBP13.02□□□□□ -0.33
TPM3-210ENST00000368530 SETDB2Q96T68 719 aa13.02□□□□□ -0.33
TPM3-210ENST00000368530 ZNF330Q9Y3S2 320 aaPredicted RBP13.02□□□□□ -0.33
TPM3-210ENST00000368530 KLRG2A4D1S0 409 aaPredicted RBP13.01□□□□□ -0.33
TPM3-210ENST00000368530 ERFEQ4G0M1 354 aa13.01□□□□□ -0.33
TPM3-210ENST00000368530 STYK1Q6J9G0 422 aa13.01□□□□□ -0.33
TPM3-210ENST00000368530 DPY19L2Q6NUT2 758 aa13.01□□□□□ -0.33
TPM3-210ENST00000368530 DZIP3Q86Y13 1208 aaKnown RBP13.01□□□□□ -0.33
TPM3-210ENST00000368530 CNBD1Q8NA66 436 aa13.01□□□□□ -0.33
TPM3-210ENST00000368530 TIAM2Q8IVF5 1701 aa13.01□□□□□ -0.33
TPM3-210ENST00000368530 FER1L6Q2WGJ9 1857 aa13.01□□□□□ -0.33
TPM3-210ENST00000368530 CCDC88AQ3V6T2 1871 aa13□□□□□ -0.33
TPM3-210ENST00000368530 NBPF26B4DH59 902 aa13□□□□□ -0.33
TPM3-210ENST00000368530 PRPF40BQ6NWY9 871 aaKnown RBP13□□□□□ -0.33
TPM3-210ENST00000368530 NBPF10Q6P3W6 841 aaKnown RBP13□□□□□ -0.33
TPM3-210ENST00000368530 CLEC4GQ6UXB4 293 aa13□□□□□ -0.33
TPM3-210ENST00000368530 NBPF15Q8N660 670 aa13□□□□□ -0.33
TPM3-210ENST00000368530 CNKSR1Q969H4 720 aa13□□□□□ -0.33
TPM3-210ENST00000368530 NUDCQ9Y266 331 aa13□□□□□ -0.33
TPM3-210ENST00000368530 DDNO94850 711 aaPredicted RBP12.99□□□□□ -0.33
TPM3-210ENST00000368530 POTEIP0CG38 1075 aa12.99□□□□□ -0.33
TPM3-210ENST00000368530 POTEJP0CG39 1038 aa12.99□□□□□ -0.33
TPM3-210ENST00000368530 MASTLQ96GX5 879 aa12.99□□□□□ -0.33
TPM3-210ENST00000368530 TAOK3Q9H2K8 898 aa12.99□□□□□ -0.33
TPM3-210ENST00000368530 SLX4Q8IY92 1834 aa12.99□□□□□ -0.33
TPM3-210ENST00000368530 MKRN4PQ13434 485 aaPredicted RBP12.98□□□□□ -0.33
TPM3-210ENST00000368530 MCM10Q7L590 875 aa12.98□□□□□ -0.33
TPM3-210ENST00000368530 SNRPA1P09661 255 aaKnown RBP12.98□□□□□ -0.33
TPM3-210ENST00000368530 IRX6P78412 446 aaPredicted RBP12.98□□□□□ -0.33
TPM3-210ENST00000368530 DCTN1Q14203 1278 aa12.98□□□□□ -0.33
TPM3-210ENST00000368530 BCORQ6W2J9 1755 aa12.97□□□□□ -0.33
TPM3-210ENST00000368530 DICER1Q9UPY3 1922 aaKnown RBP12.97□□□□□ -0.33
TPM3-210ENST00000368530 APAF1O14727 1248 aa12.97□□□□□ -0.33
TPM3-210ENST00000368530 RGL2O15211 777 aa12.97□□□□□ -0.33
TPM3-210ENST00000368530 ST5P78524 1137 aa12.97□□□□□ -0.33
TPM3-210ENST00000368530 CDCA7LQ96GN5 454 aa12.97□□□□□ -0.33
TPM3-210ENST00000368530 HSPA1AP0DMV8 641 aaKnown RBP12.96□□□□□ -0.33
TPM3-210ENST00000368530 HSPA1BP0DMV9 641 aaKnown RBP12.96□□□□□ -0.33
TPM3-210ENST00000368530 U2AF1L5P0DN76 240 aaPredicted RBP12.96□□□□□ -0.33
TPM3-210ENST00000368530 U2AF1Q01081 240 aaKnown RBP eCLIP12.96□□□□□ -0.337e-10■■□□□ 13
TPM3-210ENST00000368530 CHADLQ6NUI6 762 aa12.96□□□□□ -0.33
TPM3-210ENST00000368530 NBPF5PQ86XG9 351 aaPredicted RBP12.96□□□□□ -0.33
TPM3-210ENST00000368530 L3MBTL3Q96JM7 780 aaPredicted RBP12.96□□□□□ -0.33
TPM3-210ENST00000368530 HTATSF1O43719 755 aaKnown RBP12.95□□□□□ -0.34
TPM3-210ENST00000368530 NPR1P16066 1061 aa12.95□□□□□ -0.34
TPM3-210ENST00000368530 HLFQ16534 295 aa12.95□□□□□ -0.34
TPM3-210ENST00000368530 SOGA3Q5TF21 947 aa12.95□□□□□ -0.34
TPM3-210ENST00000368530 OLFM4Q6UX06 510 aa12.95□□□□□ -0.34
TPM3-210ENST00000368530 NPM2Q86SE8 214 aaKnown RBP12.95□□□□□ -0.34
TPM3-210ENST00000368530 CREBZFQ9NS37 354 aa12.94□□□□□ -0.34
TPM3-210ENST00000368530 SNED1Q8TER0 1413 aa12.94□□□□□ -0.34
TPM3-210ENST00000368530 PASKQ96RG2 1323 aa12.94□□□□□ -0.34
TPM3-210ENST00000368530 ARFGEF2Q9Y6D5 1785 aa12.94□□□□□ -0.34
TPM3-210ENST00000368530 FKBP4Q02790 459 aaKnown RBP eCLIP12.93□□□□□ -0.34
TPM3-210ENST00000368530 TAF7Q15545 349 aaPredicted RBP12.93□□□□□ -0.34
TPM3-210ENST00000368530 CCDC93Q567U6 631 aa12.93□□□□□ -0.34
TPM3-210ENST00000368530 TPTE2Q6XPS3 522 aa12.93□□□□□ -0.34
TPM3-210ENST00000368530 TNS4Q8IZW8 715 aa12.93□□□□□ -0.34
TPM3-210ENST00000368530 RTF1Q92541 710 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms