RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 BCL11BQ9C0K0 894 aaPredicted RBP23.39■■□□□ 1.33
CLN3-206ENST00000360019 COL5A3P25940 1745 aaPredicted RBP23.39■■□□□ 1.33
CLN3-206ENST00000360019 NUP188Q5SRE5 1749 aa23.39■■□□□ 1.33
CLN3-206ENST00000360019 GNAI3P08754 354 aa23.38■■□□□ 1.33
CLN3-206ENST00000360019 INTS5Q6P9B9 1019 aaKnown RBP23.38■■□□□ 1.33
CLN3-206ENST00000360019 MYD88Q99836 296 aa23.38■■□□□ 1.33
CLN3-206ENST00000360019 ZNF330Q9Y3S2 320 aaPredicted RBP23.38■■□□□ 1.33
CLN3-206ENST00000360019 RREB1Q92766 1687 aa23.38■■□□□ 1.33
CLN3-206ENST00000360019 GNAI2P04899 355 aa23.37■■□□□ 1.33
CLN3-206ENST00000360019 CRKLP46109 303 aaKnown RBP23.37■■□□□ 1.33
CLN3-206ENST00000360019 MYH14Q7Z406 1995 aaKnown RBP23.36■■□□□ 1.33
CLN3-206ENST00000360019 NBPF7P0C2Y1 421 aaPredicted RBP23.36■■□□□ 1.33
CLN3-206ENST00000360019 IL6STP40189 918 aaPredicted RBP23.36■■□□□ 1.33
CLN3-206ENST00000360019 NEXNQ0ZGT2 675 aa23.36■■□□□ 1.33
CLN3-206ENST00000360019 CEP85Q6P2H3 762 aa23.36■■□□□ 1.33
CLN3-206ENST00000360019 CCDC87Q9NVE4 849 aa23.36■■□□□ 1.33
CLN3-206ENST00000360019 NEURL1BA8MQ27 555 aa23.36■■□□□ 1.33
CLN3-206ENST00000360019 KCNQ4P56696 695 aa23.36■■□□□ 1.33
CLN3-206ENST00000360019 LINC00116Q8NCU8 138 aa23.36■■□□□ 1.33
CLN3-206ENST00000360019 ZBTB3Q9H5J0 574 aa23.36■■□□□ 1.33
CLN3-206ENST00000360019 LY75O60449 1722 aa23.35■■□□□ 1.33
CLN3-206ENST00000360019 UBTFL1P0CB47 393 aaPredicted RBP23.35■■□□□ 1.33
CLN3-206ENST00000360019 ANKRD44Q8N8A2 993 aa23.35■■□□□ 1.33
CLN3-206ENST00000360019 IBTKQ9P2D0 1353 aaPredicted RBP23.35■■□□□ 1.33
CLN3-206ENST00000360019 SKAP1Q86WV1 359 aa23.34■■□□□ 1.33
CLN3-206ENST00000360019 RPAP2Q8IXW5 612 aaPredicted RBP23.34■■□□□ 1.33
CLN3-206ENST00000360019 LRRFIP2Q9Y608 721 aaKnown RBP23.33■■□□□ 1.33
CLN3-206ENST00000360019 TRIM37O94972 964 aa23.33■■□□□ 1.32
CLN3-206ENST00000360019 EIF5P55010 431 aaKnown RBP23.33■■□□□ 1.32
CLN3-206ENST00000360019 KIF6Q6ZMV9 814 aa23.33■■□□□ 1.32
CLN3-206ENST00000360019 ATP5J2-PTCD1G3V325 749 aa23.32■■□□□ 1.32
CLN3-206ENST00000360019 CCNL1Q9UK58 526 aaPredicted RBP23.32■■□□□ 1.32
CLN3-206ENST00000360019 UTYO14607 1347 aa23.31■■□□□ 1.32
CLN3-206ENST00000360019 MAP3K15Q6ZN16 1313 aa23.31■■□□□ 1.32
CLN3-206ENST00000360019 GRM8O00222 908 aa23.31■■□□□ 1.32
CLN3-206ENST00000360019 GCKRQ14397 625 aa23.31■■□□□ 1.32
CLN3-206ENST00000360019 SMC5Q8IY18 1101 aa23.31■■□□□ 1.32
CLN3-206ENST00000360019 C9orf78Q9NZ63 289 aaPredicted RBP23.31■■□□□ 1.32
CLN3-206ENST00000360019 CNTNAP4Q9C0A0 1308 aa23.29■■□□□ 1.32
CLN3-206ENST00000360019 PELP1Q8IZL8 1130 aaKnown RBP23.29■■□□□ 1.32
CLN3-206ENST00000360019 ARXQ96QS3 562 aa23.29■■□□□ 1.32
CLN3-206ENST00000360019 AFDNP55196 1824 aaKnown RBP23.29■■□□□ 1.32
CLN3-206ENST00000360019 DZIP3Q86Y13 1208 aaKnown RBP23.28■■□□□ 1.32
CLN3-206ENST00000360019 TBC1D2BQ9UPU7 963 aa23.28■■□□□ 1.32
CLN3-206ENST00000360019 TCIRG1Q13488 830 aa23.27■■□□□ 1.32
CLN3-206ENST00000360019 HLFQ16534 295 aa23.27■■□□□ 1.32
CLN3-206ENST00000360019 NPM2Q86SE8 214 aaKnown RBP23.27■■□□□ 1.32
CLN3-206ENST00000360019 GIGYF2Q6Y7W6 1299 aaKnown RBP23.26■■□□□ 1.31
CLN3-206ENST00000360019 ISCA1Q9BUE6 129 aa23.26■■□□□ 1.31
CLN3-206ENST00000360019 PDZRN3Q9UPQ7 1066 aa23.26■■□□□ 1.31
CLN3-206ENST00000360019 TAF1LQ8IZX4 1826 aa23.26■■□□□ 1.31
CLN3-206ENST00000360019 PNMA6EA0A0J9YXQ4 647 aa23.26■■□□□ 1.31
CLN3-206ENST00000360019 ATP8B2P98198 1209 aa23.26■■□□□ 1.31
CLN3-206ENST00000360019 COL15A1P39059 1388 aa23.26■■□□□ 1.31
CLN3-206ENST00000360019 RC3H1Q5TC82 1133 aaKnown RBP23.25■■□□□ 1.31
CLN3-206ENST00000360019 GCC1Q96CN9 775 aa23.25■■□□□ 1.31
CLN3-206ENST00000360019 KAZALD1Q96I82 304 aa23.25■■□□□ 1.31
CLN3-206ENST00000360019 SUCLG2Q96I99 432 aa23.25■■□□□ 1.31
CLN3-206ENST00000360019 LRRC4BQ9NT99 713 aa23.25■■□□□ 1.31
CLN3-206ENST00000360019 ERVV-1B6SEH8 477 aa23.24■■□□□ 1.31
CLN3-206ENST00000360019 CCDC191Q8NCU4 936 aa23.24■■□□□ 1.31
CLN3-206ENST00000360019 DCTPP1Q9H773 170 aa23.24■■□□□ 1.31
CLN3-206ENST00000360019 CWC25Q9NXE8 425 aaPredicted RBP23.24■■□□□ 1.31
CLN3-206ENST00000360019 HMMRO75330 724 aa23.24■■□□□ 1.31
CLN3-206ENST00000360019 A0A087WZG4 1122 aa23.23■■□□□ 1.31
CLN3-206ENST00000360019 CASP7P55210 303 aa23.23■■□□□ 1.31
CLN3-206ENST00000360019 TRIM28Q13263 835 aaKnown RBP23.22■■□□□ 1.31
CLN3-206ENST00000360019 PPP1R42Q7Z4L9 355 aa23.22■■□□□ 1.31
CLN3-206ENST00000360019 JARID2Q92833 1246 aaPredicted RBP23.22■■□□□ 1.31
CLN3-206ENST00000360019 NUP98P52948 1817 aa23.22■■□□□ 1.31
CLN3-206ENST00000360019 CAMTA2O94983 1202 aa23.22■■□□□ 1.31
CLN3-206ENST00000360019 UBE3BQ7Z3V4 1068 aa23.22■■□□□ 1.31
CLN3-206ENST00000360019 HDAC5Q9UQL6 1122 aa23.22■■□□□ 1.31
CLN3-206ENST00000360019 C4BP0C0L5 1744 aa23.21■■□□□ 1.31
CLN3-206ENST00000360019 ANKRD36CQ5JPF3 1778 aa23.21■■□□□ 1.31
CLN3-206ENST00000360019 H7C1W4 665 aa23.21■■□□□ 1.31
CLN3-206ENST00000360019 NUCB1Q02818 461 aa23.21■■□□□ 1.31
CLN3-206ENST00000360019 MTX1Q13505 466 aa23.21■■□□□ 1.31
CLN3-206ENST00000360019 HSP90AB3PQ58FF7 597 aa23.21■■□□□ 1.31
CLN3-206ENST00000360019 SSH3Q8TE77 659 aa23.21■■□□□ 1.31
CLN3-206ENST00000360019 BICC1Q9H694 974 aaKnown RBP23.21■■□□□ 1.31
CLN3-206ENST00000360019 RPS6KA4O75676 772 aa23.2■■□□□ 1.3
CLN3-206ENST00000360019 RGS3P49796 1198 aa23.19■■□□□ 1.3
CLN3-206ENST00000360019 POLA2Q14181 598 aa23.19■■□□□ 1.3
CLN3-206ENST00000360019 SLC27A3Q5K4L6 730 aa23.19■■□□□ 1.3
CLN3-206ENST00000360019 SMIM5Q71RC9 77 aa23.19■■□□□ 1.3
CLN3-206ENST00000360019 AMIGO3Q86WK7 504 aa23.19■■□□□ 1.3
CLN3-206ENST00000360019 GNPATO15228 680 aa23.19■■□□□ 1.3
CLN3-206ENST00000360019 SRGAP3O43295 1099 aa23.19■■□□□ 1.3
CLN3-206ENST00000360019 GPTP24298 496 aa23.19■■□□□ 1.3
CLN3-206ENST00000360019 EPHA10Q5JZY3 1008 aa23.19■■□□□ 1.3
CLN3-206ENST00000360019 NLRP10Q86W26 655 aa23.18■■□□□ 1.3
CLN3-206ENST00000360019 PROM2Q8N271 834 aa23.18■■□□□ 1.3
CLN3-206ENST00000360019 BCORQ6W2J9 1755 aa23.17■■□□□ 1.3
CLN3-206ENST00000360019 RTL5Q5HYW3 569 aaPredicted RBP23.17■■□□□ 1.3
CLN3-206ENST00000360019 CHD1LQ86WJ1 897 aa23.17■■□□□ 1.3
CLN3-206ENST00000360019 TXNRD1Q16881 649 aa23.17■■□□□ 1.3
CLN3-206ENST00000360019 ANKRD45Q5TZF3 282 aa23.17■■□□□ 1.3
CLN3-206ENST00000360019 ZNF34Q8IZ26 560 aa23.17■■□□□ 1.3
CLN3-206ENST00000360019 TNS1Q9HBL0 1735 aaKnown RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms