RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 PRDM10Q9NQV6 1147 aa17.25■□□□□ 0.35
CPSF7-201ENST00000340437 GOLGA6L4A6NEF3 574 aa17.25■□□□□ 0.35
CPSF7-201ENST00000340437 F13A1P00488 732 aa17.25■□□□□ 0.35
CPSF7-201ENST00000340437 NAP1L2Q9ULW6 460 aaPredicted RBP17.25■□□□□ 0.35
CPSF7-201ENST00000340437 CYP46A1Q9Y6A2 500 aa17.25■□□□□ 0.35
CPSF7-201ENST00000340437 PIP4K2AP48426 406 aaPredicted RBP17.24■□□□□ 0.35
CPSF7-201ENST00000340437 PROSER3Q2NL68 480 aa17.24■□□□□ 0.35
CPSF7-201ENST00000340437 SIRT1Q96EB6 747 aa17.24■□□□□ 0.35
CPSF7-201ENST00000340437 NDUFB9Q9Y6M9 179 aa17.24■□□□□ 0.35
CPSF7-201ENST00000340437 DRC7Q8IY82 874 aa17.24■□□□□ 0.35
CPSF7-201ENST00000340437 CKAP2LQ8IYA6 745 aa17.24■□□□□ 0.35
CPSF7-201ENST00000340437 TTC21AQ8NDW8 1320 aa17.24■□□□□ 0.35
CPSF7-201ENST00000340437 KCNA6P17658 529 aa17.24■□□□□ 0.35
CPSF7-201ENST00000340437 COL9A3Q14050 684 aaPredicted RBP17.24■□□□□ 0.35
CPSF7-201ENST00000340437 LARP1BQ659C4 914 aaKnown RBP17.24■□□□□ 0.35
CPSF7-201ENST00000340437 MYL6BP14649 208 aa17.23■□□□□ 0.35
CPSF7-201ENST00000340437 ZKSCAN1P17029 563 aaPredicted RBP17.23■□□□□ 0.35
CPSF7-201ENST00000340437 CEBPZQ03701 1054 aaKnown RBP17.23■□□□□ 0.35
CPSF7-201ENST00000340437 RUFY2Q8WXA3 655 aa17.23■□□□□ 0.35
CPSF7-201ENST00000340437 GLRX3O76003 335 aaKnown RBP17.23■□□□□ 0.35
CPSF7-201ENST00000340437 PSME1Q06323 249 aa17.23■□□□□ 0.35
CPSF7-201ENST00000340437 EDC3Q96F86 508 aaKnown RBP17.23■□□□□ 0.35
CPSF7-201ENST00000340437 FSD1Q9BTV5 496 aa17.22■□□□□ 0.35
CPSF7-201ENST00000340437 EIF4A1P60842 406 aaKnown RBP17.22■□□□□ 0.35
CPSF7-201ENST00000340437 ESCO1Q5FWF5 840 aa17.22■□□□□ 0.35
CPSF7-201ENST00000340437 BEND3Q5T5X7 828 aa17.22■□□□□ 0.35
CPSF7-201ENST00000340437 RIMBP3CA6NJZ7 1639 aa17.22■□□□□ 0.35
CPSF7-201ENST00000340437 RIMBP3BA6NNM3 1639 aa17.22■□□□□ 0.35
CPSF7-201ENST00000340437 RIMBP3Q9UFD9 1639 aa17.22■□□□□ 0.35
CPSF7-201ENST00000340437 UBE2HP62256 183 aa17.22■□□□□ 0.35
CPSF7-201ENST00000340437 G3BP1Q13283 466 aaKnown RBP eCLIP17.22■□□□□ 0.35
CPSF7-201ENST00000340437 SASS6Q6UVJ0 657 aa17.21■□□□□ 0.35
CPSF7-201ENST00000340437 GPATCH3Q96I76 525 aa17.21■□□□□ 0.35
CPSF7-201ENST00000340437 ECHDC1Q9NTX5 307 aa17.21■□□□□ 0.35
CPSF7-201ENST00000340437 ATP6V1DQ9Y5K8 247 aa17.21■□□□□ 0.35
CPSF7-201ENST00000340437 RPAP1Q9BWH6 1393 aaPredicted RBP17.21■□□□□ 0.35
CPSF7-201ENST00000340437 REREQ9P2R6 1566 aa17.21■□□□□ 0.35
CPSF7-201ENST00000340437 ME3Q16798 604 aa17.2■□□□□ 0.34
CPSF7-201ENST00000340437 FBXW7Q969H0 707 aa17.2■□□□□ 0.34
CPSF7-201ENST00000340437 RBM8AQ9Y5S9 174 aaKnown RBP17.2■□□□□ 0.34
CPSF7-201ENST00000340437 FGD1P98174 961 aa17.2■□□□□ 0.34
CPSF7-201ENST00000340437 NOLC1Q14978 699 aaKnown RBP eCLIP17.2■□□□□ 0.34
CPSF7-201ENST00000340437 C1orf141Q5JVX7 400 aa17.2■□□□□ 0.34
CPSF7-201ENST00000340437 HTATSF1O43719 755 aaKnown RBP17.2■□□□□ 0.34
CPSF7-201ENST00000340437 HSP90AB4PQ58FF6 505 aa17.2■□□□□ 0.34
CPSF7-201ENST00000340437 HYPKQ9NX55 129 aa17.2■□□□□ 0.34
CPSF7-201ENST00000340437 NMIQ13287 307 aaPredicted RBP17.19■□□□□ 0.34
CPSF7-201ENST00000340437 TLR7Q9NYK1 1049 aaKnown RBP17.19■□□□□ 0.34
CPSF7-201ENST00000340437 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.19■□□□□ 0.34
CPSF7-201ENST00000340437 USP31Q70CQ4 1352 aa17.19■□□□□ 0.34
CPSF7-201ENST00000340437 SLC39A6Q13433 755 aa17.19■□□□□ 0.34
CPSF7-201ENST00000340437 TTC14Q96N46 770 aa17.19■□□□□ 0.34
CPSF7-201ENST00000340437 PEAK1Q9H792 1746 aa17.19■□□□□ 0.34
CPSF7-201ENST00000340437 HSP90B1P14625 803 aaKnown RBP17.19■□□□□ 0.34
CPSF7-201ENST00000340437 POLA2Q14181 598 aa17.19■□□□□ 0.34
CPSF7-201ENST00000340437 DDX11Q96FC9 970 aa17.19■□□□□ 0.34
CPSF7-201ENST00000340437 ADAMTS13Q76LX8 1427 aa17.18■□□□□ 0.34
CPSF7-201ENST00000340437 TCHHQ07283 1943 aa17.18■□□□□ 0.34
CPSF7-201ENST00000340437 CSB-PGBD3P0DP91 1061 aa17.18■□□□□ 0.34
CPSF7-201ENST00000340437 RIC3Q7Z5B4 369 aa17.18■□□□□ 0.34
CPSF7-201ENST00000340437 LRRC2Q9BYS8 371 aa17.18■□□□□ 0.34
CPSF7-201ENST00000340437 PTPRUQ92729 1446 aa17.18■□□□□ 0.34
CPSF7-201ENST00000340437 MTMR6Q9Y217 621 aa17.18■□□□□ 0.34
CPSF7-201ENST00000340437 TAF6LQ9Y6J9 622 aa17.18■□□□□ 0.34
CPSF7-201ENST00000340437 TPCN1Q9ULQ1 816 aa17.17■□□□□ 0.34
CPSF7-201ENST00000340437 MCM5P33992 734 aa17.17■□□□□ 0.34
CPSF7-201ENST00000340437 CDC37L1Q7L3B6 337 aa17.17■□□□□ 0.34
CPSF7-201ENST00000340437 ITSN1Q15811 1721 aa17.17■□□□□ 0.34
CPSF7-201ENST00000340437 CREB3L3Q68CJ9 461 aa17.17■□□□□ 0.34
CPSF7-201ENST00000340437 KDM4AO75164 1064 aa17.16■□□□□ 0.34
CPSF7-201ENST00000340437 CHGBP05060 677 aa17.16■□□□□ 0.34
CPSF7-201ENST00000340437 DNAJC2Q99543 621 aaKnown RBP17.16■□□□□ 0.34
CPSF7-201ENST00000340437 KDRP35968 1356 aa17.16■□□□□ 0.34
CPSF7-201ENST00000340437 LUZP1Q86V48 1076 aa17.16■□□□□ 0.34
CPSF7-201ENST00000340437 FAM184AQ8NB25 1140 aa17.16■□□□□ 0.34
CPSF7-201ENST00000340437 BICD2Q8TD16 824 aa17.16■□□□□ 0.34
CPSF7-201ENST00000340437 EAF2Q96CJ1 260 aaPredicted RBP17.16■□□□□ 0.34
CPSF7-201ENST00000340437 BICC1Q9H694 974 aaKnown RBP17.16■□□□□ 0.34
CPSF7-201ENST00000340437 C3P01024 1663 aa17.16■□□□□ 0.34
CPSF7-201ENST00000340437 DBF4Q9UBU7 674 aaPredicted RBP17.16■□□□□ 0.34
CPSF7-201ENST00000340437 PHF8Q9UPP1 1060 aa17.16■□□□□ 0.34
CPSF7-201ENST00000340437 NRXN3Q9Y4C0 1643 aa17.15■□□□□ 0.34
CPSF7-201ENST00000340437 SPATA31D1Q6ZQQ2 1576 aa17.15■□□□□ 0.34
CPSF7-201ENST00000340437 LIG1P18858 919 aa17.15■□□□□ 0.34
CPSF7-201ENST00000340437 BLOC1S2Q6QNY1 142 aa17.15■□□□□ 0.34
CPSF7-201ENST00000340437 SUCLG2Q96I99 432 aa17.15■□□□□ 0.34
CPSF7-201ENST00000340437 SSH2Q76I76 1423 aa17.15■□□□□ 0.34
CPSF7-201ENST00000340437 A0A0D9SFI3 127 aa17.15■□□□□ 0.34
CPSF7-201ENST00000340437 AP5Z1O43299 807 aa17.15■□□□□ 0.34
CPSF7-201ENST00000340437 AOX1Q06278 1338 aa17.14■□□□□ 0.33
CPSF7-201ENST00000340437 PLEKHO1Q53GL0 409 aaPredicted RBP17.14■□□□□ 0.33
CPSF7-201ENST00000340437 TTC6Q86TZ1 520 aa17.14■□□□□ 0.33
CPSF7-201ENST00000340437 CCDC171Q6TFL3 1326 aa17.14■□□□□ 0.33
CPSF7-201ENST00000340437 KRT85P78386 507 aa17.14■□□□□ 0.33
CPSF7-201ENST00000340437 DACT1Q9NYF0 836 aa17.14■□□□□ 0.33
CPSF7-201ENST00000340437 PYCARDQ9ULZ3 195 aa17.14■□□□□ 0.33
CPSF7-201ENST00000340437 MON2Q7Z3U7 1717 aa17.13■□□□□ 0.33
CPSF7-201ENST00000340437 DYNC1I1O14576 645 aa17.13■□□□□ 0.33
CPSF7-201ENST00000340437 CCDC192P0DO97 292 aa17.13■□□□□ 0.33
CPSF7-201ENST00000340437 CCDC129Q6ZRS4 1044 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms