RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ZSCAN23Q3MJ62 389 aa15.92■□□□□ 0.14
CSPG4-201ENST00000308508 ZSCAN29Q8IWY8 852 aaPredicted RBP15.92■□□□□ 0.14
CSPG4-201ENST00000308508 CALML4Q96GE6 196 aa15.92■□□□□ 0.14
CSPG4-201ENST00000308508 CTAGE9A4FU28 777 aa15.92■□□□□ 0.14
CSPG4-201ENST00000308508 STX6O43752 255 aa15.92■□□□□ 0.14
CSPG4-201ENST00000308508 LRSAM1Q6UWE0 723 aa15.91■□□□□ 0.14
CSPG4-201ENST00000308508 STXBP4Q6ZWJ1 553 aa15.91■□□□□ 0.14
CSPG4-201ENST00000308508 ZSWIM4Q9H7M6 989 aa15.91■□□□□ 0.14
CSPG4-201ENST00000308508 PABPN1LA6NDY0 278 aaKnown RBP15.91■□□□□ 0.14
CSPG4-201ENST00000308508 CCDC94Q9BW85 323 aaPredicted RBP15.91■□□□□ 0.14
CSPG4-201ENST00000308508 CCDC40Q4G0X9 1142 aa15.91■□□□□ 0.14
CSPG4-201ENST00000308508 ANAPC4Q9UJX5 808 aa15.91■□□□□ 0.14
CSPG4-201ENST00000308508 NAPBQ9H115 298 aa15.91■□□□□ 0.14
CSPG4-201ENST00000308508 NUTM1Q86Y26 1132 aa15.91■□□□□ 0.14
CSPG4-201ENST00000308508 RAB3IL1Q8TBN0 382 aa15.91■□□□□ 0.14
CSPG4-201ENST00000308508 GOLGA1Q92805 767 aa15.91■□□□□ 0.14
CSPG4-201ENST00000308508 TTC21AQ8NDW8 1320 aa15.91■□□□□ 0.14
CSPG4-201ENST00000308508 NOLC1Q14978 699 aaKnown RBP eCLIP15.91■□□□□ 0.14
CSPG4-201ENST00000308508 GBP6Q6ZN66 633 aa15.91■□□□□ 0.14
CSPG4-201ENST00000308508 CCDC96Q2M329 555 aa15.9■□□□□ 0.14
CSPG4-201ENST00000308508 PAIP2Q9BPZ3 127 aaKnown RBP15.9■□□□□ 0.14
CSPG4-201ENST00000308508 CCDC77Q9BR77 488 aa15.9■□□□□ 0.14
CSPG4-201ENST00000308508 TCP11L1Q9NUJ3 509 aa15.9■□□□□ 0.14
CSPG4-201ENST00000308508 CYLC1P35663 651 aaPredicted RBP15.9■□□□□ 0.14
CSPG4-201ENST00000308508 PRPHP41219 470 aa15.9■□□□□ 0.14
CSPG4-201ENST00000308508 CCDC129Q6ZRS4 1044 aa15.9■□□□□ 0.14
CSPG4-201ENST00000308508 LRRC9Q6ZRR7 1453 aa15.9■□□□□ 0.14
CSPG4-201ENST00000308508 TTC12Q9H892 705 aaPredicted RBP15.9■□□□□ 0.14
CSPG4-201ENST00000308508 SPG7Q9UQ90 795 aa15.9■□□□□ 0.14
CSPG4-201ENST00000308508 CCDC194A0A1B0GVG4 234 aa15.9■□□□□ 0.14
CSPG4-201ENST00000308508 IQCA1Q86XH1 822 aa15.9■□□□□ 0.14
CSPG4-201ENST00000308508 DRC1Q96MC2 740 aa15.9■□□□□ 0.14
CSPG4-201ENST00000308508 KIF21BO75037 1637 aa15.9■□□□□ 0.14
CSPG4-201ENST00000308508 IGHMBP2P38935 993 aaKnown RBP15.9■□□□□ 0.14
CSPG4-201ENST00000308508 BTBD11A6QL63 1104 aa15.89■□□□□ 0.14
CSPG4-201ENST00000308508 BAG4O95429 457 aaKnown RBP15.89■□□□□ 0.14
CSPG4-201ENST00000308508 ZFYP08048 801 aaPredicted RBP15.89■□□□□ 0.14
CSPG4-201ENST00000308508 SCLT1Q96NL6 688 aa15.89■□□□□ 0.14
CSPG4-201ENST00000308508 STIM2Q9P246 746 aa15.89■□□□□ 0.14
CSPG4-201ENST00000308508 EHMT1Q9H9B1 1298 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 RMND1Q9NWS8 449 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 UBASH3AP57075 661 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 EXOC6BQ9Y2D4 811 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 GOLGA8BA8MQT2 603 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 LRRC27Q9C0I9 530 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 BIN1O00499 593 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 TBC1D5Q92609 795 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 ZBTB16Q05516 673 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 PTPRGP23470 1445 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 ERBINQ96RT1 1412 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 KIF3CO14782 793 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 GJB2P29033 226 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 CUL5Q93034 780 aa15.89■□□□□ 0.13
CSPG4-201ENST00000308508 ZSCAN16Q9H4T2 348 aaPredicted RBP15.89■□□□□ 0.13
CSPG4-201ENST00000308508 TMEM132EQ6IEE7 984 aa15.88■□□□□ 0.13
CSPG4-201ENST00000308508 RNF41Q9H4P4 317 aaPredicted RBP15.88■□□□□ 0.13
CSPG4-201ENST00000308508 MKNK2Q9HBH9 465 aa15.88■□□□□ 0.13
CSPG4-201ENST00000308508 CCDC102BQ68D86 513 aa15.88■□□□□ 0.13
CSPG4-201ENST00000308508 NBPF11Q86T75 865 aa15.88■□□□□ 0.13
CSPG4-201ENST00000308508 SSX2IPQ9Y2D8 614 aa15.88■□□□□ 0.13
CSPG4-201ENST00000308508 MYO1BO43795 1136 aa15.88■□□□□ 0.13
CSPG4-201ENST00000308508 GUCY1B3Q02153 619 aa15.88■□□□□ 0.13
CSPG4-201ENST00000308508 SLU7O95391 586 aaKnown RBP15.88■□□□□ 0.13
CSPG4-201ENST00000308508 SLFN5Q08AF3 891 aa15.88■□□□□ 0.13
CSPG4-201ENST00000308508 TCERG1LQ5VWI1 586 aa15.88■□□□□ 0.13
CSPG4-201ENST00000308508 ZNF530Q6P9A1 599 aaPredicted RBP15.88■□□□□ 0.13
CSPG4-201ENST00000308508 LRRC45Q96CN5 670 aa15.88■□□□□ 0.13
CSPG4-201ENST00000308508 ZNF692Q9BU19 519 aaPredicted RBP15.88■□□□□ 0.13
CSPG4-201ENST00000308508 SKILP12757 684 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 RASSF4Q9H2L5 321 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 ZNF213O14771 459 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 CATIPQ7Z7H3 387 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 HFM1A2PYH4 1435 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 ALDH1L2Q3SY69 923 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 CCDC114Q96M63 670 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 A0A1B0GUA9 196 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 TUBBP07437 444 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 N4BP3O15049 544 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 NLRP5P59047 1200 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 AKR1B10O60218 316 aa15.87■□□□□ 0.13
CSPG4-201ENST00000308508 FCHSD2O94868 740 aa15.86■□□□□ 0.13
CSPG4-201ENST00000308508 MAP7D1Q3KQU3 841 aa15.86■□□□□ 0.13
CSPG4-201ENST00000308508 KAT6BQ8WYB5 2073 aa15.86■□□□□ 0.13
CSPG4-201ENST00000308508 MINDY4BA8MYZ0 360 aa15.86■□□□□ 0.13
CSPG4-201ENST00000308508 PRC1O43663 620 aa15.86■□□□□ 0.13
CSPG4-201ENST00000308508 ATP2A1O14983 1001 aa15.86■□□□□ 0.13
CSPG4-201ENST00000308508 DNAI1Q9UI46 699 aa15.86■□□□□ 0.13
CSPG4-201ENST00000308508 STRN4Q9NRL3 753 aa15.86■□□□□ 0.13
CSPG4-201ENST00000308508 SWAP70Q9UH65 585 aa15.86■□□□□ 0.13
CSPG4-201ENST00000308508 SETSIPP0DME0 302 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 METTL24Q5JXM2 366 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 ARHGAP5Q13017 1502 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 APBB1IPQ7Z5R6 666 aaPredicted RBP15.85■□□□□ 0.13
CSPG4-201ENST00000308508 CPLX4Q7Z7G2 160 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 HCLS1P14317 486 aaPredicted RBP15.85■□□□□ 0.13
CSPG4-201ENST00000308508 VPS18Q9P253 973 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 ABCF2Q9UG63 623 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 MAP3K9P80192 1104 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 SPINK5Q9NQ38 1064 aaPredicted RBP15.85■□□□□ 0.13
CSPG4-201ENST00000308508 LACTBP83111 547 aaPredicted RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms