RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 PTGS1P23219 599 aa22.49■■□□□ 1.19
USP48-201ENST00000308271 FKBP4Q02790 459 aaKnown RBP eCLIP22.49■■□□□ 1.19
USP48-201ENST00000308271 SKIDA1Q1XH10 827 aa22.49■■□□□ 1.19
USP48-201ENST00000308271 WASF1Q92558 559 aa22.49■■□□□ 1.19
USP48-201ENST00000308271 SLU7O95391 586 aaKnown RBP22.49■■□□□ 1.19
USP48-201ENST00000308271 LARP1Q6PKG0 1096 aaKnown RBP22.49■■□□□ 1.19
USP48-201ENST00000308271 CCDC69A6NI79 296 aa22.48■■□□□ 1.19
USP48-201ENST00000308271 MYL6BP14649 208 aa22.48■■□□□ 1.19
USP48-201ENST00000308271 RRP12Q5JTH9 1297 aaKnown RBP22.48■■□□□ 1.19
USP48-201ENST00000308271 ZNF397Q8NF99 534 aaPredicted RBP22.48■■□□□ 1.19
USP48-201ENST00000308271 STIM1Q13586 685 aa22.48■■□□□ 1.19
USP48-201ENST00000308271 NEK1Q96PY6 1258 aa22.48■■□□□ 1.19
USP48-201ENST00000308271 TRIM35Q9UPQ4 493 aa22.48■■□□□ 1.19
USP48-201ENST00000308271 AK2P54819 239 aa22.48■■□□□ 1.19
USP48-201ENST00000308271 GUCY1B3Q02153 619 aa22.48■■□□□ 1.19
USP48-201ENST00000308271 DBF4Q9UBU7 674 aaPredicted RBP22.48■■□□□ 1.19
USP48-201ENST00000308271 ABCC2Q92887 1545 aa22.48■■□□□ 1.19
USP48-201ENST00000308271 FBLN1P23142 703 aa22.47■■□□□ 1.19
USP48-201ENST00000308271 SYT1P21579 422 aa22.47■■□□□ 1.19
USP48-201ENST00000308271 DNAJC25Q9H1X3 360 aa22.47■■□□□ 1.19
USP48-201ENST00000308271 KIF4BQ2VIQ3 1234 aa22.47■■□□□ 1.19
USP48-201ENST00000308271 PDE4CQ08493 712 aa22.47■■□□□ 1.19
USP48-201ENST00000308271 TMEM63CQ9P1W3 806 aa22.47■■□□□ 1.19
USP48-201ENST00000308271 POTEB2H3BUK9 544 aa22.46■■□□□ 1.19
USP48-201ENST00000308271 ZFYVE9O95405 1425 aa22.46■■□□□ 1.19
USP48-201ENST00000308271 VPS53Q5VIR6 699 aa22.46■■□□□ 1.19
USP48-201ENST00000308271 CCDC148Q8NFR7 591 aa22.46■■□□□ 1.19
USP48-201ENST00000308271 CRACR2AQ9BSW2 395 aa22.45■■□□□ 1.19
USP48-201ENST00000308271 NACAP1Q9BZK3 213 aa22.45■■□□□ 1.19
USP48-201ENST00000308271 RBM8AQ9Y5S9 174 aaKnown RBP22.45■■□□□ 1.18
USP48-201ENST00000308271 KDM6BO15054 1643 aa22.45■■□□□ 1.18
USP48-201ENST00000308271 MAP9Q49MG5 647 aa22.45■■□□□ 1.18
USP48-201ENST00000308271 TRERF1Q96PN7 1200 aa22.45■■□□□ 1.18
USP48-201ENST00000308271 CCDC181Q5TID7 509 aa22.45■■□□□ 1.18
USP48-201ENST00000308271 PHACTR3Q96KR7 559 aa22.45■■□□□ 1.18
USP48-201ENST00000308271 TATP17735 454 aaPredicted RBP22.44■■□□□ 1.18
USP48-201ENST00000308271 MAPK8IP2Q13387 824 aaPredicted RBP22.44■■□□□ 1.18
USP48-201ENST00000308271 TXLNBQ8N3L3 684 aa22.44■■□□□ 1.18
USP48-201ENST00000308271 CEP131Q9UPN4 1083 aa22.44■■□□□ 1.18
USP48-201ENST00000308271 ADAMTS12P58397 1594 aa22.44■■□□□ 1.18
USP48-201ENST00000308271 FANCAO15360 1455 aa22.44■■□□□ 1.18
USP48-201ENST00000308271 CCDC57Q2TAC2 916 aa22.43■■□□□ 1.18
USP48-201ENST00000308271 BIN1O00499 593 aa22.43■■□□□ 1.18
USP48-201ENST00000308271 MCM3P25205 808 aa22.43■■□□□ 1.18
USP48-201ENST00000308271 LUC7LQ9NQ29 371 aaKnown RBP22.43■■□□□ 1.18
USP48-201ENST00000308271 SRRTQ9BXP5 876 aaKnown RBP22.43■■□□□ 1.18
USP48-201ENST00000308271 PATL2C9JE40 543 aaKnown RBP22.43■■□□□ 1.18
USP48-201ENST00000308271 CCT2P78371 535 aaKnown RBP22.43■■□□□ 1.18
USP48-201ENST00000308271 OTUD7AQ8TE49 926 aaPredicted RBP22.43■■□□□ 1.18
USP48-201ENST00000308271 PI4KAP2A4QPH2 592 aa22.42■■□□□ 1.18
USP48-201ENST00000308271 GOLGA6L10A6NI86 522 aa22.42■■□□□ 1.18
USP48-201ENST00000308271 PI4KAP1Q8N8J0 262 aa22.42■■□□□ 1.18
USP48-201ENST00000308271 BRD1O95696 1058 aa22.42■■□□□ 1.18
USP48-201ENST00000308271 EVA1CP58658 441 aa22.42■■□□□ 1.18
USP48-201ENST00000308271 MYO6Q9UM54 1294 aa22.42■■□□□ 1.18
USP48-201ENST00000308271 A0A1W2PP64 1363 aa22.41■■□□□ 1.18
USP48-201ENST00000308271 IBTKQ9P2D0 1353 aaPredicted RBP22.41■■□□□ 1.18
USP48-201ENST00000308271 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.41■■□□□ 1.18
USP48-201ENST00000308271 CNNM1Q9NRU3 951 aa22.41■■□□□ 1.18
USP48-201ENST00000308271 RIOK3O14730 519 aaKnown RBP22.41■■□□□ 1.18
USP48-201ENST00000308271 CNNM3Q8NE01 707 aa22.41■■□□□ 1.18
USP48-201ENST00000308271 MAGI2Q86UL8 1455 aa22.41■■□□□ 1.18
USP48-201ENST00000308271 EPS15P42566 896 aa22.4■■□□□ 1.18
USP48-201ENST00000308271 GNG11P61952 73 aa22.4■■□□□ 1.18
USP48-201ENST00000308271 STK11IPQ8N1F8 1099 aa22.4■■□□□ 1.18
USP48-201ENST00000308271 HYPKQ9NX55 129 aa22.4■■□□□ 1.18
USP48-201ENST00000308271 TTC41PQ6P2S7 1318 aa22.4■■□□□ 1.18
USP48-201ENST00000308271 FAM177BA6PVY3 158 aa22.4■■□□□ 1.18
USP48-201ENST00000308271 LUZP1Q86V48 1076 aa22.4■■□□□ 1.18
USP48-201ENST00000308271 FAM193AP78312 1265 aa22.4■■□□□ 1.18
USP48-201ENST00000308271 ESCO1Q5FWF5 840 aa22.4■■□□□ 1.18
USP48-201ENST00000308271 ARFGAP3Q9NP61 516 aa22.39■■□□□ 1.18
USP48-201ENST00000308271 DNAI1Q9UI46 699 aa22.39■■□□□ 1.18
USP48-201ENST00000308271 BRF1Q92994 677 aa22.39■■□□□ 1.17
USP48-201ENST00000308271 MRPS27Q92552 414 aaKnown RBP22.39■■□□□ 1.17
USP48-201ENST00000308271 KIAA1328Q86T90 577 aa22.38■■□□□ 1.17
USP48-201ENST00000308271 CCDC191Q8NCU4 936 aa22.38■■□□□ 1.17
USP48-201ENST00000308271 NUP133Q8WUM0 1156 aa22.38■■□□□ 1.17
USP48-201ENST00000308271 FAM107BQ9H098 131 aa22.38■■□□□ 1.17
USP48-201ENST00000308271 IFIT1P09914 478 aaKnown RBP22.38■■□□□ 1.17
USP48-201ENST00000308271 TCEANC2Q96MN5 208 aa22.38■■□□□ 1.17
USP48-201ENST00000308271 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.38■■□□□ 1.17
USP48-201ENST00000308271 V9GYY5 206 aaPredicted RBP22.38■■□□□ 1.17
USP48-201ENST00000308271 SOS1Q07889 1333 aaPredicted RBP22.38■■□□□ 1.17
USP48-201ENST00000308271 LMAN1P49257 510 aa22.38■■□□□ 1.17
USP48-201ENST00000308271 IGSF3O75054 1194 aa22.37■■□□□ 1.17
USP48-201ENST00000308271 PTPRTO14522 1441 aa22.37■■□□□ 1.17
USP48-201ENST00000308271 ADGBQ8N7X0 1667 aa22.37■■□□□ 1.17
USP48-201ENST00000308271 AMOTQ4VCS5 1084 aa22.37■■□□□ 1.17
USP48-201ENST00000308271 KIF6Q6ZMV9 814 aa22.37■■□□□ 1.17
USP48-201ENST00000308271 AOPEPQ8N6M6 819 aa22.37■■□□□ 1.17
USP48-201ENST00000308271 SLC26A8Q96RN1 970 aa22.37■■□□□ 1.17
USP48-201ENST00000308271 GOLGA8BA8MQT2 603 aa22.37■■□□□ 1.17
USP48-201ENST00000308271 KCNG4Q8TDN1 519 aa22.37■■□□□ 1.17
USP48-201ENST00000308271 USP19O94966 1318 aa22.36■■□□□ 1.17
USP48-201ENST00000308271 SHTN1A0MZ66 631 aa22.36■■□□□ 1.17
USP48-201ENST00000308271 GABPB1Q06547 395 aaPredicted RBP22.36■■□□□ 1.17
USP48-201ENST00000308271 ORC3Q9UBD5 711 aaPredicted RBP22.36■■□□□ 1.17
USP48-201ENST00000308271 TRAPPC8Q9Y2L5 1435 aa22.36■■□□□ 1.17
USP48-201ENST00000308271 MSH6P52701 1360 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms