RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 IFIT1P09914 478 aaKnown RBP13.06□□□□□ -0.32
PTPN4-201ENST00000263708 ZBTB16Q05516 673 aa13.06□□□□□ -0.32
PTPN4-201ENST00000263708 ATF7IPQ6VMQ6 1270 aa13.06□□□□□ -0.32
PTPN4-201ENST00000263708 CHD1LQ86WJ1 897 aa13.06□□□□□ -0.32
PTPN4-201ENST00000263708 FAM114A1Q8IWE2 563 aa13.06□□□□□ -0.32
PTPN4-201ENST00000263708 STX6O43752 255 aa13.06□□□□□ -0.32
PTPN4-201ENST00000263708 CKAP4Q07065 602 aaKnown RBP13.06□□□□□ -0.32
PTPN4-201ENST00000263708 DDX46Q7L014 1031 aaKnown RBP13.06□□□□□ -0.32
PTPN4-201ENST00000263708 TMCO4Q5TGY1 634 aa13.06□□□□□ -0.32
PTPN4-201ENST00000263708 JPH4Q96JJ6 628 aa13.06□□□□□ -0.32
PTPN4-201ENST00000263708 TTC12Q9H892 705 aaPredicted RBP13.06□□□□□ -0.32
PTPN4-201ENST00000263708 IDEP14735 1019 aa13.06□□□□□ -0.32
PTPN4-201ENST00000263708 EPSTI1Q96J88 318 aa13.06□□□□□ -0.32
PTPN4-201ENST00000263708 TCP11L1Q9NUJ3 509 aa13.06□□□□□ -0.32
PTPN4-201ENST00000263708 SIRT1Q96EB6 747 aa13.06□□□□□ -0.32
PTPN4-201ENST00000263708 CGNQ9P2M7 1197 aaKnown RBP13.06□□□□□ -0.32
PTPN4-201ENST00000263708 GMNNO75496 209 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 C16orf71Q8IYS4 520 aaPredicted RBP13.05□□□□□ -0.32
PTPN4-201ENST00000263708 PPP1R9BQ96SB3 815 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 SMC6Q96SB8 1091 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 SLC5A1P13866 664 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 HSPA4P34932 840 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 KIF5AQ12840 1032 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 MAP3K12Q12852 859 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 NSRP1Q9H0G5 558 aaKnown RBP13.05□□□□□ -0.32
PTPN4-201ENST00000263708 CRCPO75575 148 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 MSL1Q68DK7 614 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 HAUS7Q99871 368 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 CCDC88BA6NC98 1476 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 GOLGA8BA8MQT2 603 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 FAM212AQ96EL1 285 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 C16orf45Q96MC5 204 aaPredicted RBP13.05□□□□□ -0.32
PTPN4-201ENST00000263708 CLGNO14967 610 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 TBCAO75347 108 aaKnown RBP13.05□□□□□ -0.32
PTPN4-201ENST00000263708 KRT13P13646 458 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 IFI16Q16666 785 aaKnown RBP13.05□□□□□ -0.32
PTPN4-201ENST00000263708 ATP2B3Q16720 1220 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 MRVI1Q9Y6F6 885 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 RFX1P22670 979 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 PLS1Q14651 629 aa13.05□□□□□ -0.32
PTPN4-201ENST00000263708 PROCA1Q8NCQ7 364 aaPredicted RBP13.05□□□□□ -0.32
PTPN4-201ENST00000263708 PRAM1Q96QH2 718 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 RASAL2Q9UJF2 1139 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 GOLGA8AA7E2F4 631 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 PTCD1O75127 700 aaKnown RBP13.04□□□□□ -0.32
PTPN4-201ENST00000263708 TMOD3Q9NYL9 352 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 POTEB2H3BUK9 544 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 MNAT1P51948 309 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 ISM2Q6H9L7 571 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 TMC6Q7Z403 805 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 ARHGAP5Q13017 1502 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 EEF2P13639 858 aaKnown RBP13.04□□□□□ -0.32
PTPN4-201ENST00000263708 CCDC50Q8IVM0 306 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 PRPF31Q8WWY3 499 aaKnown RBP13.04□□□□□ -0.32
PTPN4-201ENST00000263708 PLVAPQ9BX97 442 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 HYPKQ9NX55 129 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 CWC25Q9NXE8 425 aaPredicted RBP13.04□□□□□ -0.32
PTPN4-201ENST00000263708 CALCOCO1Q9P1Z2 691 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 C6orf229H3BNL8 230 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 PRPF40BQ6NWY9 871 aaKnown RBP13.04□□□□□ -0.32
PTPN4-201ENST00000263708 CCDC183Q5T5S1 534 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 EXOC1Q9NV70 894 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 BIN1O00499 593 aa13.04□□□□□ -0.32
PTPN4-201ENST00000263708 IFIT3O14879 490 aaKnown RBP13.04□□□□□ -0.32
PTPN4-201ENST00000263708 CCDC12Q8WUD4 166 aaPredicted RBP13.03□□□□□ -0.32
PTPN4-201ENST00000263708 HMGB2P26583 209 aaKnown RBP13.03□□□□□ -0.32
PTPN4-201ENST00000263708 IL27Q8NEV9 243 aa13.03□□□□□ -0.32
PTPN4-201ENST00000263708 ANKS4BQ8N8V4 417 aa13.03□□□□□ -0.32
PTPN4-201ENST00000263708 ZNF213O14771 459 aa13.03□□□□□ -0.32
PTPN4-201ENST00000263708 CCDC172P0C7W6 258 aa13.03□□□□□ -0.32
PTPN4-201ENST00000263708 CCT2P78371 535 aaKnown RBP13.03□□□□□ -0.32
PTPN4-201ENST00000263708 GEN1Q17RS7 908 aa13.03□□□□□ -0.32
PTPN4-201ENST00000263708 BOLA2Q9H3K6 86 aa13.03□□□□□ -0.32
PTPN4-201ENST00000263708 TXNDC16Q9P2K2 825 aa13.03□□□□□ -0.32
PTPN4-201ENST00000263708 CFAP157Q5JU67 520 aa13.03□□□□□ -0.32
PTPN4-201ENST00000263708 CCDC117Q8IWD4 279 aaPredicted RBP13.03□□□□□ -0.32
PTPN4-201ENST00000263708 ZSWIM4Q9H7M6 989 aa13.03□□□□□ -0.32
PTPN4-201ENST00000263708 CCT6BQ92526 530 aa13.02□□□□□ -0.32
PTPN4-201ENST00000263708 ZNF526Q8TF50 670 aaPredicted RBP13.02□□□□□ -0.33
PTPN4-201ENST00000263708 CLEC11AQ9Y240 323 aa13.02□□□□□ -0.33
PTPN4-201ENST00000263708 DYNC1I1O14576 645 aa13.02□□□□□ -0.33
PTPN4-201ENST00000263708 IFIT5Q13325 482 aaKnown RBP13.02□□□□□ -0.33
PTPN4-201ENST00000263708 CABP5Q9NP86 173 aa13.02□□□□□ -0.33
PTPN4-201ENST00000263708 NCBP1Q09161 790 aaKnown RBP13.02□□□□□ -0.33
PTPN4-201ENST00000263708 CDK19Q9BWU1 502 aa13.02□□□□□ -0.33
PTPN4-201ENST00000263708 BIRC2Q13490 618 aa13.01□□□□□ -0.33
PTPN4-201ENST00000263708 FYCO1Q9BQS8 1478 aa13.01□□□□□ -0.33
PTPN4-201ENST00000263708 KIF5BP33176 963 aa13.01□□□□□ -0.33
PTPN4-201ENST00000263708 KAT14Q9H8E8 782 aa13.01□□□□□ -0.33
PTPN4-201ENST00000263708 GAS8O95995 478 aa13.01□□□□□ -0.33
PTPN4-201ENST00000263708 HLA-DOAP06340 250 aa13.01□□□□□ -0.33
PTPN4-201ENST00000263708 RAPGEF2Q9Y4G8 1499 aa13.01□□□□□ -0.33
PTPN4-201ENST00000263708 RRP9O43818 475 aaKnown RBP13.01□□□□□ -0.33
PTPN4-201ENST00000263708 CCDC14Q49A88 953 aa13.01□□□□□ -0.33
PTPN4-201ENST00000263708 MYD88Q99836 296 aa13.01□□□□□ -0.33
PTPN4-201ENST00000263708 PANK2Q9BZ23 570 aa13.01□□□□□ -0.33
PTPN4-201ENST00000263708 PTPRGP23470 1445 aa13□□□□□ -0.33
PTPN4-201ENST00000263708 ZNF622Q969S3 477 aaKnown RBP eCLIP13□□□□□ -0.33
PTPN4-201ENST00000263708 SELENOOQ9BVL4 669 aa13□□□□□ -0.33
PTPN4-201ENST00000263708 RNF41Q9H4P4 317 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms