RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 DmtnQ9WV69 405 aa13.67□□□□□ -0.22
Trim56-201ENSMUST00000054384 Cbfa2t2O70374 594 aa13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 Sugp2Q8CH09 1067 aa13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 Bag3Q9JLV1 577 aaKnown RBP13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 Zkscan7E9PVW1 718 aa13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 Mtmr3Q8K296 1196 aa13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 Vps18Q8R307 973 aa13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 PdiltQ9DAN1 588 aa13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 VeztQ3ZK22 780 aa13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 Cep19Q9CQA8 163 aa13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 Bicd1Q8BR07 835 aa13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 Strn4P58404 760 aa13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 DonsonQ9QXP4 560 aa13.66□□□□□ -0.22
Trim56-201ENSMUST00000054384 Mtus1Q5HZI1 1210 aa13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 Specc1lQ2KN98 1118 aaKnown RBP13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 Gas8Q60779 478 aa13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 Krt15Q61414 452 aa13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 Nek5Q7TSC3 627 aa13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 Klhl10Q9D5V2 608 aa13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 Fez2Q6TYB5 348 aa13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 Cnksr2Q80YA9 1032 aa13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 Gramd4Q8CB44 633 aa13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 4931400O07RikQ9D4M5 137 aa13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 GmnnO88513 206 aa13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 Plekhg5Q66T02 1073 aa13.65□□□□□ -0.22
Trim56-201ENSMUST00000054384 Nucb2P81117 420 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Tmem266Q8BZB3 538 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Cdr1E9Q0B4 517 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Prkar2bP31324 416 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Tacc3Q9JJ11 631 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Pkd2l2Q9JLG4 621 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Mmel1Q9JLI3 765 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Epb41l3Q9WV92 929 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Naip1Q9QWK5 1403 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Sh2d4bA6X942 431 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Map4k4P97820 1233 aaKnown RBP13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Hs1bp3Q3TC93 395 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Atp2b1G5E829 1220 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ssrp1Q08943 708 aaKnown RBP13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Gm7298A0A0N4SVU1 1476 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ccdc148Q6P5U8 527 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Atf7Q8R0S1 413 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ces1aE9PYP1 563 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Metap2O08663 478 aaKnown RBP13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Hmg20bQ9Z104 317 aa13.64□□□□□ -0.23
Trim56-201ENSMUST00000054384 Usp11Q99K46 921 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Kdm3aQ6PCM1 1323 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Gm28919A0A087WP35 240 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 ZfxP17012 799 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ano10Q8BH79 659 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Cdca8Q8BHX3 289 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Dapk3O54784 448 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Zhx1P70121 873 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 EvcP57680 1005 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Yeats4Q9CR11 227 aaKnown RBP13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Syap1Q9D5V6 365 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 TchhA0A0B4J1F9 1599 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Sec62Q8BU14 398 aaKnown RBP13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Rasa1E9PYG6 1038 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Cfap57Q9D180 1249 aa13.63□□□□□ -0.23
Trim56-201ENSMUST00000054384 Map7d1A2AJI0 846 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Tspyl2Q7TQI8 677 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ttc21aQ8C0S4 1314 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Zmym4A2A791 1549 aaKnown RBP13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Tmem87bQ8BKU8 555 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Hip1rQ9JKY5 1068 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Krt79Q8VED5 531 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Cfap100Q80VN0 613 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Taok3Q8BYC6 898 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Dhx9O70133 1380 aaKnown RBP13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Arl1P61211 181 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Mcm6P97311 821 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Top1Q04750 767 aaKnown RBP13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Kmt5bQ3U8K7 883 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ppfibp1Q8C8U0 969 aaKnown RBP13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 HnrnpmQ9D0E1 729 aaKnown RBP13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Psmc4P54775 418 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ccdc129Q14B48 1034 aa13.62□□□□□ -0.23
Trim56-201ENSMUST00000054384 Znf692Q3U381 531 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Fam76aQ922G2 307 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Rfc1P35601 1131 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ppp1r9bQ6R891 817 aaKnown RBP13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Haus2Q9CQS9 234 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Slc5a1Q8C3K6 665 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Sept14Q9DA97 430 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Speer4f2E9Q366 295 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Speer4aF8VPX6 267 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Fbln2P37889 1221 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Clip2Q9Z0H8 1047 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Opa1P58281 960 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Kcnh5Q920E3 988 aa13.61□□□□□ -0.23
Trim56-201ENSMUST00000054384 Tbc1d9Q3UYK3 1264 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Setdb1O88974 1307 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 TnikP83510 1323 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Camsap2Q8C1B1 1461 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Usp25P57080 1055 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 NrkQ9R0G8 1455 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Serpinb6bO08804 377 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Kif2aP28740 705 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Mctp2Q5RJH2 878 aa13.6□□□□□ -0.23
Retrieved 100 of 22,080 RNA–protein pairs in 17.8 ms