RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPC40	YPR110C	ERR2	P0CX11	437 aa		4.2	□□□□□ -1.74
RPC40	YPR110C	SAM35	P14693	329 aa		4.2	□□□□□ -1.74
RPC40	YPR110C	NAM7	P30771	971 aa	Known RBP	4.2	□□□□□ -1.74
RPC40	YPR110C	CDC12	P32468	407 aa	Known RBP	4.2	□□□□□ -1.74
RPC40	YPR110C	YKL151C	P36059	337 aa		4.2	□□□□□ -1.74
RPC40	YPR110C	TAT1	P38085	619 aa		4.2	□□□□□ -1.74
RPC40	YPR110C	SAF1	P38352	637 aa		4.2	□□□□□ -1.74
RPC40	YPR110C	NMD3	P38861	518 aa	Known RBP	4.2	□□□□□ -1.74
RPC40	YPR110C	MMM1	P41800	426 aa		4.2	□□□□□ -1.74
RPC40	YPR110C	CIT3	P43635	486 aa		4.2	□□□□□ -1.74
RPC40	YPR110C	TPO2	P53283	614 aa		4.2	□□□□□ -1.74
RPC40	YPR110C	POB3	Q04636	552 aa	Known RBP	4.2	□□□□□ -1.74
RPC40	YPR110C	YDR306C	Q06640	478 aa		4.2	□□□□□ -1.74
RPC40	YPR110C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
RPC40	YPR110C	YLL058W	Q12198	575 aa		4.2	□□□□□ -1.74
RPC40	YPR110C	MSH2	P25847	964 aa		4.19	□□□□□ -1.74
RPC40	YPR110C	THI4	P32318	326 aa		4.19	□□□□□ -1.74
RPC40	YPR110C	MDL2	P33311	773 aa		4.19	□□□□□ -1.74
RPC40	YPR110C	CCC2	P38995	1004 aa		4.19	□□□□□ -1.74
RPC40	YPR110C	SRP1	Q02821	542 aa	Known RBP	4.19	□□□□□ -1.74
RPC40	YPR110C	UTP14	Q04500	899 aa	Known RBP	4.19	□□□□□ -1.74
RPC40	YPR110C	DUS3	Q06053	668 aa	Known RBP	4.19	□□□□□ -1.74
RPC40	YPR110C	ATG13	Q06628	738 aa		4.19	□□□□□ -1.74
RPC40	YPR110C	RCL1	Q08096	367 aa	Predicted RBP	4.19	□□□□□ -1.74
RPC40	YPR110C	ADE8	P04161	214 aa		4.18	□□□□□ -1.74
RPC40	YPR110C	MSB1	P21339	1137 aa	Known RBP	4.18	□□□□□ -1.74
RPC40	YPR110C	PRO1	P32264	428 aa		4.18	□□□□□ -1.74
RPC40	YPR110C	AAR2	P32357	355 aa	Predicted RBP	4.18	□□□□□ -1.74
RPC40	YPR110C	WHI3	P34761	661 aa	Known RBP	4.18	□□□□□ -1.74
RPC40	YPR110C	UGA2	P38067	497 aa		4.18	□□□□□ -1.74
RPC40	YPR110C	YHL012W	P38709	493 aa		4.18	□□□□□ -1.74
RPC40	YPR110C	AKR1	P39010	764 aa		4.18	□□□□□ -1.74
RPC40	YPR110C	UBP6	P43593	499 aa	Known RBP	4.18	□□□□□ -1.74
RPC40	YPR110C	MTC3	P53077	123 aa		4.18	□□□□□ -1.74
RPC40	YPR110C	RCM1	P53972	490 aa		4.18	□□□□□ -1.74
RPC40	YPR110C	YPL034W	Q03083	165 aa		4.18	□□□□□ -1.74
RPC40	YPR110C	BUL2	Q03758	920 aa	Known RBP	4.18	□□□□□ -1.74
RPC40	YPR110C	HRQ1	Q05549	1077 aa		4.18	□□□□□ -1.74
RPC40	YPR110C	AFR1	P33304	620 aa		4.17	□□□□□ -1.74
RPC40	YPR110C	DOM34	P33309	386 aa		4.17	□□□□□ -1.74
RPC40	YPR110C	PET10	P36139	283 aa		4.17	□□□□□ -1.74
RPC40	YPR110C	CCZ1	P38273	704 aa		4.17	□□□□□ -1.74
RPC40	YPR110C	MNN1	P39106	762 aa		4.17	□□□□□ -1.74
RPC40	YPR110C	PEX7	P39108	375 aa		4.17	□□□□□ -1.74
RPC40	YPR110C	GDH3	P39708	457 aa		4.17	□□□□□ -1.74
RPC40	YPR110C	OYE3	P41816	400 aa	Predicted RBP	4.17	□□□□□ -1.74
RPC40	YPR110C	YFL054C	P43549	646 aa		4.17	□□□□□ -1.74
RPC40	YPR110C	GYP7	P48365	746 aa		4.17	□□□□□ -1.74
RPC40	YPR110C	MAL11	P53048	616 aa		4.17	□□□□□ -1.74
RPC40	YPR110C	LCD1	Q04377	747 aa		4.17	□□□□□ -1.74
RPC40	YPR110C	TOP3	P13099	656 aa		4.16	□□□□□ -1.74
RPC40	YPR110C	MSD1	P15179	658 aa	Known RBP	4.16	□□□□□ -1.74
RPC40	YPR110C	PPH3	P32345	308 aa		4.16	□□□□□ -1.74
RPC40	YPR110C	COQ2	P32378	372 aa		4.16	□□□□□ -1.74
RPC40	YPR110C	YKR078W	P36158	585 aa	Known RBP	4.16	□□□□□ -1.74
RPC40	YPR110C	SAH1	P39954	449 aa	Known RBP	4.16	□□□□□ -1.74
RPC40	YPR110C	RRT14	P40470	206 aa		4.16	□□□□□ -1.74
RPC40	YPR110C	ALO1	P54783	526 aa	Known RBP	4.16	□□□□□ -1.74
RPC40	YPR110C	UGO1	Q03327	502 aa		4.16	□□□□□ -1.74
RPC40	YPR110C	RSC58	Q07979	502 aa		4.16	□□□□□ -1.74
RPC40	YPR110C	YLR122C	Q12312	125 aa		4.16	□□□□□ -1.74
RPC40	YPR110C	BI4	P03879	638 aa		4.15	□□□□□ -1.75
RPC40	YPR110C	CHS2	P14180	963 aa		4.15	□□□□□ -1.75
RPC40	YPR110C	YRO2	P38079	344 aa		4.15	□□□□□ -1.75
RPC40	YPR110C	YBR284W	P38150	797 aa		4.15	□□□□□ -1.75
RPC40	YPR110C	YBR238C	P38330	731 aa	Known RBP	4.15	□□□□□ -1.75
RPC40	YPR110C	YGL081W	P53156	320 aa		4.15	□□□□□ -1.75
RPC40	YPR110C	MDM38	Q08179	573 aa		4.15	□□□□□ -1.75
RPC40	YPR110C	TRE1	Q08919	783 aa		4.15	□□□□□ -1.75
RPC40	YPR110C	YPR071W	Q12346	211 aa		4.15	□□□□□ -1.75
RPC40	YPR110C	MDM12	Q92328	271 aa		4.15	□□□□□ -1.75
RPC40	YPR110C	GLT1	Q12680	2145 aa	Known RBP	4.15	□□□□□ -1.75
RPC40	YPR110C	TOM70	P07213	617 aa	Known RBP	4.14	□□□□□ -1.75
RPC40	YPR110C	NPP1	P25353	742 aa		4.14	□□□□□ -1.75
RPC40	YPR110C	TSL1	P38427	1098 aa	Known RBP	4.14	□□□□□ -1.75
RPC40	YPR110C	CCM1	P48237	864 aa	Predicted RBP	4.14	□□□□□ -1.75
RPC40	YPR110C	HSV2	P50079	448 aa	Predicted RBP	4.14	□□□□□ -1.75
RPC40	YPR110C	YKE2	P52553	114 aa		4.14	□□□□□ -1.75
RPC40	YPR110C	NTG2	Q08214	380 aa		4.14	□□□□□ -1.75
RPC40	YPR110C	NBA1	Q08229	501 aa	Known RBP	4.14	□□□□□ -1.75
RPC40	YPR110C	NOP14	Q99207	810 aa	Known RBP	4.14	□□□□□ -1.75
RPC40	YPR110C	ACE2	P21192	770 aa		4.13	□□□□□ -1.75
RPC40	YPR110C	FUN30	P31380	1131 aa		4.13	□□□□□ -1.75
RPC40	YPR110C	REC104	P33323	182 aa		4.13	□□□□□ -1.75
RPC40	YPR110C	PEX6	P33760	1030 aa		4.13	□□□□□ -1.75
RPC40	YPR110C	KAE1	P36132	386 aa		4.13	□□□□□ -1.75
RPC40	YPR110C	GIC1	P38785	314 aa		4.13	□□□□□ -1.75
RPC40	YPR110C	TOK1	P40310	691 aa		4.13	□□□□□ -1.75
RPC40	YPR110C	SRT1	Q03175	343 aa		4.13	□□□□□ -1.75
RPC40	YPR110C	RSB1	Q08417	382 aa		4.13	□□□□□ -1.75
RPC40	YPR110C	NSI1	Q12457	570 aa		4.13	□□□□□ -1.75
RPC40	YPR110C	RPC82	P32349	654 aa		4.12	□□□□□ -1.75
RPC40	YPR110C	MAC1	P35192	417 aa		4.12	□□□□□ -1.75
RPC40	YPR110C	NPP2	P39997	493 aa		4.12	□□□□□ -1.75
RPC40	YPR110C	ALG2	P43636	503 aa		4.12	□□□□□ -1.75
RPC40	YPR110C	YJR142W	P47173	342 aa		4.12	□□□□□ -1.75
RPC40	YPR110C	ORC3	P54790	616 aa		4.12	□□□□□ -1.75
RPC40	YPR110C	DNM1	P54861	757 aa		4.12	□□□□□ -1.75
RPC40	YPR110C	SVS1	Q12254	260 aa		4.12	□□□□□ -1.75
RPC40	YPR110C	YGR161W-C	Q3E744	92 aa		4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 42.3 ms