RNA–Protein interactions for RNA: YEL005C

VAB2, Transcript of Subunit of the BLOC-1 complex involved in endosomal maturation, yeast

Gene VAB2, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAB2	YEL005C	SNO2	P53823	222 aa		4.63	□□□□□ -1.67
VAB2	YEL005C	SHE9	Q04172	456 aa		4.63	□□□□□ -1.67
VAB2	YEL005C	FPR4	Q06205	392 aa	Predicted RBP	4.63	□□□□□ -1.67
VAB2	YEL005C	NBA1	Q08229	501 aa	Known RBP	4.63	□□□□□ -1.67
VAB2	YEL005C	PUS9	Q12069	462 aa		4.63	□□□□□ -1.67
VAB2	YEL005C	RAD4	P14736	754 aa		4.62	□□□□□ -1.67
VAB2	YEL005C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
VAB2	YEL005C	PRP9	P19736	530 aa	Known RBP	4.62	□□□□□ -1.67
VAB2	YEL005C	CCZ1	P38273	704 aa		4.62	□□□□□ -1.67
VAB2	YEL005C	GPB2	P39717	880 aa		4.62	□□□□□ -1.67
VAB2	YEL005C	IRR1	P40541	1150 aa		4.62	□□□□□ -1.67
VAB2	YEL005C	OSW7	P43611	510 aa		4.62	□□□□□ -1.67
VAB2	YEL005C	VBA5	P36172	582 aa		4.61	□□□□□ -1.67
VAB2	YEL005C	YHL012W	P38709	493 aa		4.61	□□□□□ -1.67
VAB2	YEL005C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
VAB2	YEL005C	MPH1	P40562	993 aa		4.61	□□□□□ -1.67
VAB2	YEL005C	NSE3	Q05541	303 aa		4.61	□□□□□ -1.67
VAB2	YEL005C	ESC2	Q06340	456 aa		4.61	□□□□□ -1.67
VAB2	YEL005C	PBY1	P38254	753 aa		4.6	□□□□□ -1.67
VAB2	YEL005C	YBR184W	P38299	523 aa		4.6	□□□□□ -1.67
VAB2	YEL005C	TAT2	P38967	592 aa		4.6	□□□□□ -1.67
VAB2	YEL005C	ERP6	P53198	216 aa		4.6	□□□□□ -1.67
VAB2	YEL005C	YGR125W	P53273	1036 aa		4.6	□□□□□ -1.67
VAB2	YEL005C	TNA1	P53322	534 aa		4.6	□□□□□ -1.67
VAB2	YEL005C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
VAB2	YEL005C	HOS3	Q02959	697 aa	Known RBP	4.6	□□□□□ -1.67
VAB2	YEL005C	RSB1	Q08417	382 aa		4.6	□□□□□ -1.67
VAB2	YEL005C	YER152C	P10356	443 aa		4.59	□□□□□ -1.67
VAB2	YEL005C	HSP60	P19882	572 aa	Known RBP	4.59	□□□□□ -1.67
VAB2	YEL005C	ARE1	P25628	610 aa		4.59	□□□□□ -1.67
VAB2	YEL005C	YSC84	P32793	468 aa		4.59	□□□□□ -1.67
VAB2	YEL005C	RPN3	P40016	523 aa	Known RBP	4.59	□□□□□ -1.67
VAB2	YEL005C	EAF1	Q06337	982 aa		4.59	□□□□□ -1.67
VAB2	YEL005C	THS1	P04801	734 aa	Known RBP	4.58	□□□□□ -1.68
VAB2	YEL005C	HUL4	P40985	892 aa		4.58	□□□□□ -1.68
VAB2	YEL005C	HUL5	P53119	910 aa		4.58	□□□□□ -1.68
VAB2	YEL005C	YDR132C	Q03900	495 aa		4.58	□□□□□ -1.68
VAB2	YEL005C	BDF2	Q07442	638 aa		4.58	□□□□□ -1.68
VAB2	YEL005C	YPL066W	Q12194	479 aa		4.58	□□□□□ -1.68
VAB2	YEL005C	PPH3	P32345	308 aa		4.57	□□□□□ -1.68
VAB2	YEL005C	CDC11	P32458	415 aa		4.57	□□□□□ -1.68
VAB2	YEL005C	MDL2	P33311	773 aa		4.57	□□□□□ -1.68
VAB2	YEL005C	TRM2	P33753	639 aa		4.57	□□□□□ -1.68
VAB2	YEL005C	MBP1	P39678	833 aa		4.57	□□□□□ -1.68
VAB2	YEL005C	ALR2	P43553	858 aa		4.57	□□□□□ -1.68
VAB2	YEL005C	IOC3	P43596	787 aa		4.57	□□□□□ -1.68
VAB2	YEL005C	FOL2	P51601	243 aa	Known RBP	4.57	□□□□□ -1.68
VAB2	YEL005C	ORC1	P54784	914 aa	Predicted RBP	4.57	□□□□□ -1.68
VAB2	YEL005C	SRP1	Q02821	542 aa	Known RBP	4.57	□□□□□ -1.68
VAB2	YEL005C	ACM1	Q08981	209 aa		4.57	□□□□□ -1.68
VAB2	YEL005C	RPL11A	P0C0W9	174 aa	Known RBP	4.56	□□□□□ -1.68
VAB2	YEL005C	GAL11	P19659	1081 aa		4.56	□□□□□ -1.68
VAB2	YEL005C	SRO9	P25567	434 aa	Known RBP	4.56	□□□□□ -1.68
VAB2	YEL005C	AAR2	P32357	355 aa	Predicted RBP	4.56	□□□□□ -1.68
VAB2	YEL005C	PPG1	P32838	368 aa		4.56	□□□□□ -1.68
VAB2	YEL005C	MSE1	P48525	536 aa		4.56	□□□□□ -1.68
VAB2	YEL005C	DUS3	Q06053	668 aa	Known RBP	4.56	□□□□□ -1.68
VAB2	YEL005C	YDR306C	Q06640	478 aa		4.56	□□□□□ -1.68
VAB2	YEL005C	YDL124W	Q07551	312 aa	Known RBP	4.56	□□□□□ -1.68
VAB2	YEL005C	FLC1	Q08967	793 aa		4.56	□□□□□ -1.68
VAB2	YEL005C	RPL11B	Q3E757	174 aa	Predicted RBP	4.56	□□□□□ -1.68
VAB2	YEL005C	SAM35	P14693	329 aa		4.55	□□□□□ -1.68
VAB2	YEL005C	RPL8B	P29453	256 aa	Known RBP	4.55	□□□□□ -1.68
VAB2	YEL005C	AIM26	P32858	118 aa		4.55	□□□□□ -1.68
VAB2	YEL005C	UGA2	P38067	497 aa		4.55	□□□□□ -1.68
VAB2	YEL005C	GGA2	P38817	585 aa	Known RBP	4.55	□□□□□ -1.68
VAB2	YEL005C	GEM1	P39722	662 aa		4.55	□□□□□ -1.68
VAB2	YEL005C	STE5	P32917	917 aa		4.54	□□□□□ -1.68
VAB2	YEL005C	PNT1	P38969	423 aa		4.54	□□□□□ -1.68
VAB2	YEL005C	CCC2	P38995	1004 aa		4.54	□□□□□ -1.68
VAB2	YEL005C	PIK1	P39104	1066 aa		4.54	□□□□□ -1.68
VAB2	YEL005C	CHZ1	P40019	153 aa	Predicted RBP	4.54	□□□□□ -1.68
VAB2	YEL005C	MXR1	P40029	184 aa		4.54	□□□□□ -1.68
VAB2	YEL005C	SPT20	P50875	604 aa		4.54	□□□□□ -1.68
VAB2	YEL005C	RPN4	Q03465	531 aa		4.54	□□□□□ -1.68
VAB2	YEL005C	UBX5	Q06682	500 aa		4.54	□□□□□ -1.68
VAB2	YEL005C	FMP25	Q08023	583 aa		4.54	□□□□□ -1.68
VAB2	YEL005C	CIT1	P00890	479 aa		4.53	□□□□□ -1.68
VAB2	YEL005C	SPS1	P08458	490 aa		4.53	□□□□□ -1.68
VAB2	YEL005C	SAH1	P39954	449 aa	Known RBP	4.53	□□□□□ -1.68
VAB2	YEL005C	SIP5	P40210	489 aa	Known RBP	4.53	□□□□□ -1.68
VAB2	YEL005C	SUN4	P53616	420 aa		4.53	□□□□□ -1.68
VAB2	YEL005C	ADE8	P04161	214 aa		4.52	□□□□□ -1.69
VAB2	YEL005C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.52	□□□□□ -1.69	not detected
VAB2	YEL005C	PFD1	P46988	109 aa		4.52	□□□□□ -1.69
VAB2	YEL005C	UTP8	P53276	713 aa	Known RBP	4.52	□□□□□ -1.69
VAB2	YEL005C	RSC58	Q07979	502 aa		4.52	□□□□□ -1.69
VAB2	YEL005C	BAP2	P38084	609 aa		4.51	□□□□□ -1.69
VAB2	YEL005C	YLR125W	Q12138	136 aa		4.51	□□□□□ -1.69
VAB2	YEL005C	TOM70	P07213	617 aa	Known RBP	4.5	□□□□□ -1.69
VAB2	YEL005C	SNF5	P18480	905 aa		4.5	□□□□□ -1.69
VAB2	YEL005C	DBP2	P24783	546 aa	Known RBP	4.5	□□□□□ -1.69
VAB2	YEL005C	YRO2	P38079	344 aa		4.5	□□□□□ -1.69
VAB2	YEL005C	RFC5	P38251	354 aa		4.5	□□□□□ -1.69
VAB2	YEL005C	YHR020W	P38708	688 aa	Known RBP	4.5	□□□□□ -1.69
VAB2	YEL005C	RSP5	P39940	809 aa	Known RBP	4.5	□□□□□ -1.69
VAB2	YEL005C	YOR352W	Q08816	343 aa		4.5	□□□□□ -1.69
VAB2	YEL005C	SVS1	Q12254	260 aa		4.5	□□□□□ -1.69
VAB2	YEL005C	MET6	P05694	767 aa	Known RBP	4.49	□□□□□ -1.69
VAB2	YEL005C	KIN2	P13186	1147 aa	Known RBP	4.49	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 15.8 ms