RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 EIF4A1P60842 406 aaKnown RBP22.1■■□□□ 1.13
CLN3-256ENST00000637107 GNAI1P63096 354 aa22.1■■□□□ 1.13
CLN3-256ENST00000637107 HEG1Q9ULI3 1381 aa22.1■■□□□ 1.13
CLN3-256ENST00000637107 C5P01031 1676 aa22.1■■□□□ 1.13
CLN3-256ENST00000637107 PRAMEF22A3QJZ6 481 aa22.1■■□□□ 1.13
CLN3-256ENST00000637107 LINC00116Q8NCU8 138 aa22.1■■□□□ 1.13
CLN3-256ENST00000637107 ZNF831Q5JPB2 1677 aa22.09■■□□□ 1.13
CLN3-256ENST00000637107 TSR2Q969E8 191 aaKnown RBP22.09■■□□□ 1.13
CLN3-256ENST00000637107 TJP1Q07157 1748 aa22.09■■□□□ 1.13
CLN3-256ENST00000637107 KRT24Q2M2I5 525 aa22.08■■□□□ 1.13
CLN3-256ENST00000637107 DNAJC10Q8IXB1 793 aa22.08■■□□□ 1.13
CLN3-256ENST00000637107 IL16Q14005 1332 aa22.08■■□□□ 1.12
CLN3-256ENST00000637107 CENPQQ7L2Z9 268 aaPredicted RBP22.08■■□□□ 1.12
CLN3-256ENST00000637107 VSIG10Q8N0Z9 540 aa22.08■■□□□ 1.12
CLN3-256ENST00000637107 ANO8Q9HCE9 1232 aaPredicted RBP22.08■■□□□ 1.12
CLN3-256ENST00000637107 MS4A1P11836 297 aa22.06■■□□□ 1.12
CLN3-256ENST00000637107 CANXP27824 592 aaKnown RBP22.06■■□□□ 1.12
CLN3-256ENST00000637107 COL5A3P25940 1745 aaPredicted RBP22.06■■□□□ 1.12
CLN3-256ENST00000637107 MSH5O43196 834 aa22.06■■□□□ 1.12
CLN3-256ENST00000637107 CICQ96RK0 1608 aaPredicted RBP22.05■■□□□ 1.12
CLN3-256ENST00000637107 C4BP0C0L5 1744 aa22.05■■□□□ 1.12
CLN3-256ENST00000637107 GIGYF1O75420 1035 aaPredicted RBP22.05■■□□□ 1.12
CLN3-256ENST00000637107 ZNF827Q17R98 1081 aa22.05■■□□□ 1.12
CLN3-256ENST00000637107 USP16Q9Y5T5 823 aa22.05■■□□□ 1.12
CLN3-256ENST00000637107 SNRPA1P09661 255 aaKnown RBP22.04■■□□□ 1.12
CLN3-256ENST00000637107 MYH14Q7Z406 1995 aaKnown RBP22.04■■□□□ 1.12
CLN3-256ENST00000637107 CT47B1P0C2W7 299 aaPredicted RBP22.04■■□□□ 1.12
CLN3-256ENST00000637107 FRAT1Q92837 279 aaPredicted RBP22.04■■□□□ 1.12
CLN3-256ENST00000637107 CYP19A1P11511 503 aaPredicted RBP22.03■■□□□ 1.12
CLN3-256ENST00000637107 PANK1Q8TE04 598 aa22.03■■□□□ 1.12
CLN3-256ENST00000637107 AKT1S1Q96B36 256 aa22.03■■□□□ 1.12
CLN3-256ENST00000637107 CRKLP46109 303 aaKnown RBP22.02■■□□□ 1.11
CLN3-256ENST00000637107 EXOSC9Q06265 439 aaKnown RBP22.01■■□□□ 1.11
CLN3-256ENST00000637107 SLC15A2Q16348 729 aa22.01■■□□□ 1.11
CLN3-256ENST00000637107 NBPF14Q5TI25 921 aa22.01■■□□□ 1.11
CLN3-256ENST00000637107 SMIM5Q71RC9 77 aa22.01■■□□□ 1.11
CLN3-256ENST00000637107 AMIGO3Q86WK7 504 aa22.01■■□□□ 1.11
CLN3-256ENST00000637107 COG6Q9Y2V7 657 aa22.01■■□□□ 1.11
CLN3-256ENST00000637107 ELL2O00472 640 aaPredicted RBP22■■□□□ 1.11
CLN3-256ENST00000637107 C8orf58Q8NAV2 365 aa22■■□□□ 1.11
CLN3-256ENST00000637107 TEX13AQ9BXU3 409 aaPredicted RBP22■■□□□ 1.11
CLN3-256ENST00000637107 INTS5Q6P9B9 1019 aaKnown RBP22■■□□□ 1.11
CLN3-256ENST00000637107 TSPYL6Q8N831 410 aa22■■□□□ 1.11
CLN3-256ENST00000637107 BCL2L13Q9BXK5 485 aa22■■□□□ 1.11
CLN3-256ENST00000637107 STK32BQ9NY57 414 aa22■■□□□ 1.11
CLN3-256ENST00000637107 STARD3NLO95772 234 aa21.99■■□□□ 1.11
CLN3-256ENST00000637107 SKAP1Q86WV1 359 aa21.99■■□□□ 1.11
CLN3-256ENST00000637107 AK7Q96M32 723 aa21.99■■□□□ 1.11
CLN3-256ENST00000637107 CNTNAP4Q9C0A0 1308 aa21.99■■□□□ 1.11
CLN3-256ENST00000637107 TUBGCP6Q96RT7 1819 aa21.98■■□□□ 1.11
CLN3-256ENST00000637107 A1BGP04217 495 aa21.98■■□□□ 1.11
CLN3-256ENST00000637107 TFCP2L1Q9NZI6 479 aa21.98■■□□□ 1.11
CLN3-256ENST00000637107 GNPATO15228 680 aa21.98■■□□□ 1.11
CLN3-256ENST00000637107 PDE4AP27815 886 aa21.98■■□□□ 1.11
CLN3-256ENST00000637107 PIP4K2AP48426 406 aaPredicted RBP21.98■■□□□ 1.11
CLN3-256ENST00000637107 R3HDM1Q15032 1099 aaKnown RBP21.98■■□□□ 1.11
CLN3-256ENST00000637107 RC3H1Q5TC82 1133 aaKnown RBP21.98■■□□□ 1.11
CLN3-256ENST00000637107 ZBTB1Q9Y2K1 713 aa21.98■■□□□ 1.11
CLN3-256ENST00000637107 LAMB4A4D0S4 1761 aa21.98■■□□□ 1.11
CLN3-256ENST00000637107 UBR3Q6ZT12 1888 aa21.97■■□□□ 1.11
CLN3-256ENST00000637107 EIF2S2P20042 333 aaKnown RBP21.97■■□□□ 1.11
CLN3-256ENST00000637107 NECTIN2Q92692 538 aa21.97■■□□□ 1.11
CLN3-256ENST00000637107 CCDC87Q9NVE4 849 aa21.97■■□□□ 1.11
CLN3-256ENST00000637107 TNNQ9UQP3 1299 aa21.97■■□□□ 1.11
CLN3-256ENST00000637107 PSDA5PKW4 1024 aaPredicted RBP21.96■■□□□ 1.11
CLN3-256ENST00000637107 HMGB2P26583 209 aaKnown RBP21.96■■□□□ 1.11
CLN3-256ENST00000637107 CLUAP1Q96AJ1 413 aa21.96■■□□□ 1.11
CLN3-256ENST00000637107 RLBP1P12271 317 aa21.96■■□□□ 1.11
CLN3-256ENST00000637107 PHF14O94880 888 aa21.95■■□□□ 1.1
CLN3-256ENST00000637107 ANP32EQ9BTT0 268 aa21.95■■□□□ 1.1
CLN3-256ENST00000637107 BACH2Q9BYV9 841 aa21.95■■□□□ 1.1
CLN3-256ENST00000637107 PDGFDQ9GZP0 370 aaPredicted RBP21.95■■□□□ 1.1
CLN3-256ENST00000637107 AAMPQ13685 434 aa21.94■■□□□ 1.1
CLN3-256ENST00000637107 PNPLA7Q6ZV29 1317 aa21.94■■□□□ 1.1
CLN3-256ENST00000637107 RTCBQ9Y3I0 505 aaKnown RBP21.94■■□□□ 1.1
CLN3-256ENST00000637107 RPS6KA4O75676 772 aa21.93■■□□□ 1.1
CLN3-256ENST00000637107 TWISTNBQ3B726 338 aaPredicted RBP21.93■■□□□ 1.1
CLN3-256ENST00000637107 ZKSCAN2Q63HK3 967 aa21.93■■□□□ 1.1
CLN3-256ENST00000637107 SRCAPQ6ZRS2 3230 aa21.93■■□□□ 1.1
CLN3-256ENST00000637107 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.92■■□□□ 1.1
CLN3-256ENST00000637107 NBPF26B4DH59 902 aa21.92■■□□□ 1.1
CLN3-256ENST00000637107 IGHDP01880 384 aa21.92■■□□□ 1.1
CLN3-256ENST00000637107 HOXB7P09629 217 aa21.92■■□□□ 1.1
CLN3-256ENST00000637107 NBPF10Q6P3W6 841 aaKnown RBP21.92■■□□□ 1.1
CLN3-256ENST00000637107 NBPF15Q8N660 670 aa21.92■■□□□ 1.1
CLN3-256ENST00000637107 HDGFL1Q5TGJ6 251 aa21.92■■□□□ 1.1
CLN3-256ENST00000637107 SMC4Q9NTJ3 1288 aa21.92■■□□□ 1.1
CLN3-256ENST00000637107 COL23A1Q86Y22 540 aaPredicted RBP21.91■■□□□ 1.1
CLN3-256ENST00000637107 SSH1Q8WYL5 1049 aa21.91■■□□□ 1.1
CLN3-256ENST00000637107 ZNF330Q9Y3S2 320 aaPredicted RBP21.91■■□□□ 1.1
CLN3-256ENST00000637107 SOS1Q07889 1333 aaPredicted RBP21.91■■□□□ 1.1
CLN3-256ENST00000637107 QSER1Q2KHR3 1735 aa21.9■■□□□ 1.1
CLN3-256ENST00000637107 ANXA1P04083 346 aa21.9■■□□□ 1.1
CLN3-256ENST00000637107 SSFA2P28290 1259 aa21.9■■□□□ 1.1
CLN3-256ENST00000637107 PDIA6Q15084 440 aa21.9■■□□□ 1.1
CLN3-256ENST00000637107 VAMP4O75379 141 aa21.89■■□□□ 1.09
CLN3-256ENST00000637107 MYL6BP14649 208 aa21.89■■□□□ 1.09
CLN3-256ENST00000637107 ANP32AP39687 249 aaKnown RBP21.89■■□□□ 1.09
CLN3-256ENST00000637107 EIF5P55010 431 aaKnown RBP21.89■■□□□ 1.09
CLN3-256ENST00000637107 PROSER3Q2NL68 480 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms