RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 FKBP4Q02790 459 aaKnown RBP eCLIP15.29■□□□□ 0.04
MSH6-215ENST00000622629 ANKRD1Q15327 319 aa15.29■□□□□ 0.04
MSH6-215ENST00000622629 NFXL1Q6ZNB6 911 aa15.29■□□□□ 0.04
MSH6-215ENST00000622629 USP19O94966 1318 aa15.29■□□□□ 0.04
MSH6-215ENST00000622629 ABCC4O15439 1325 aa15.28■□□□□ 0.04
MSH6-215ENST00000622629 SYNE3Q6ZMZ3 975 aa15.28■□□□□ 0.04
MSH6-215ENST00000622629 TCEANC2Q96MN5 208 aa15.28■□□□□ 0.04
MSH6-215ENST00000622629 PRDM11Q9NQV5 511 aa15.28■□□□□ 0.04
MSH6-215ENST00000622629 PA2G4Q9UQ80 394 aaKnown RBP15.28■□□□□ 0.04
MSH6-215ENST00000622629 KIF1BO60333 1816 aa15.28■□□□□ 0.04
MSH6-215ENST00000622629 TET3O43151 1660 aa15.28■□□□□ 0.04
MSH6-215ENST00000622629 CCDC192P0DO97 292 aa15.28■□□□□ 0.04
MSH6-215ENST00000622629 ARAP3Q8WWN8 1544 aa15.28■□□□□ 0.04
MSH6-215ENST00000622629 SLC39A6Q13433 755 aa15.28■□□□□ 0.04
MSH6-215ENST00000622629 PHF23Q9BUL5 403 aaPredicted RBP15.27■□□□□ 0.04
MSH6-215ENST00000622629 TNMDQ9H2S6 317 aa15.27■□□□□ 0.04
MSH6-215ENST00000622629 PNMA6EA0A0J9YXQ4 647 aa15.27■□□□□ 0.04
MSH6-215ENST00000622629 NUTM2BA6NNL0 878 aaPredicted RBP15.27■□□□□ 0.04
MSH6-215ENST00000622629 NUTM2EB1AL46 878 aaPredicted RBP15.27■□□□□ 0.04
MSH6-215ENST00000622629 CAMK4Q16566 473 aa15.27■□□□□ 0.04
MSH6-215ENST00000622629 NUTM2AQ8IVF1 878 aaPredicted RBP15.27■□□□□ 0.04
MSH6-215ENST00000622629 FMNL2Q96PY5 1086 aa15.27■□□□□ 0.04
MSH6-215ENST00000622629 ATP5J2-PTCD1G3V325 749 aa15.27■□□□□ 0.03
MSH6-215ENST00000622629 HOXC9P31274 260 aa15.27■□□□□ 0.03
MSH6-215ENST00000622629 TRIM29Q14134 588 aa15.27■□□□□ 0.03
MSH6-215ENST00000622629 ANKRD24Q8TF21 1146 aa15.27■□□□□ 0.03
MSH6-215ENST00000622629 SPATA32Q96LK8 384 aa15.27■□□□□ 0.03
MSH6-215ENST00000622629 MADDQ8WXG6 1647 aa15.27■□□□□ 0.03
MSH6-215ENST00000622629 MAP3K4Q9Y6R4 1608 aa15.27■□□□□ 0.03
MSH6-215ENST00000622629 HYPKQ9NX55 129 aa15.26■□□□□ 0.03
MSH6-215ENST00000622629 CHMLP26374 656 aa15.26■□□□□ 0.03
MSH6-215ENST00000622629 METP08581 1390 aa15.26■□□□□ 0.03
MSH6-215ENST00000622629 EFCAB6Q5THR3 1501 aa15.26■□□□□ 0.03
MSH6-215ENST00000622629 STX6O43752 255 aa15.26■□□□□ 0.03
MSH6-215ENST00000622629 KINO60870 393 aaKnown RBP15.26■□□□□ 0.03
MSH6-215ENST00000622629 PIP4K2AP48426 406 aaPredicted RBP15.26■□□□□ 0.03
MSH6-215ENST00000622629 USP25Q9UHP3 1055 aa15.26■□□□□ 0.03
MSH6-215ENST00000622629 CWF19L2Q2TBE0 894 aaKnown RBP15.25■□□□□ 0.03
MSH6-215ENST00000622629 A0A087WZG4 1122 aa15.25■□□□□ 0.03
MSH6-215ENST00000622629 TPM2P07951 284 aa15.25■□□□□ 0.03
MSH6-215ENST00000622629 PRIM1P49642 420 aaKnown RBP15.25■□□□□ 0.03
MSH6-215ENST00000622629 NECAB1Q8N987 351 aa15.25■□□□□ 0.03
MSH6-215ENST00000622629 UBE3BQ7Z3V4 1068 aa15.25■□□□□ 0.03
MSH6-215ENST00000622629 CCDC34Q96HJ3 373 aa15.25■□□□□ 0.03
MSH6-215ENST00000622629 TFIP11Q9UBB9 837 aaKnown RBP15.25■□□□□ 0.03
MSH6-215ENST00000622629 TMEM2Q9UHN6 1383 aa15.25■□□□□ 0.03
MSH6-215ENST00000622629 DTNBO60941 627 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 CEP126Q9P2H0 1117 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 GJB2P29033 226 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 AKAP17AQ02040 695 aaKnown RBP15.24■□□□□ 0.03
MSH6-215ENST00000622629 KRT28Q7Z3Y7 464 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 SIRT2Q8IXJ6 389 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 RASSF8Q8NHQ8 419 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 NUP62CLQ9H1M0 184 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 PPFIA3O75145 1194 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 ME1P48163 572 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 CHRNA2Q15822 529 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 CCDC57Q2TAC2 916 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 EVI5LQ96CN4 794 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 ANTXR1Q9H6X2 564 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 RRAGDQ9NQL2 400 aaPredicted RBP15.24■□□□□ 0.03
MSH6-215ENST00000622629 E9PCH4 1651 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 CD2BP2O95400 341 aaKnown RBP15.24■□□□□ 0.03
MSH6-215ENST00000622629 CCDC158Q5M9N0 1113 aa15.24■□□□□ 0.03
MSH6-215ENST00000622629 TBX22Q9Y458 520 aa15.23■□□□□ 0.03
MSH6-215ENST00000622629 SOS1Q07889 1333 aaPredicted RBP15.23■□□□□ 0.03
MSH6-215ENST00000622629 TTC39AQ5SRH9 613 aa15.23■□□□□ 0.03
MSH6-215ENST00000622629 CPA1P15085 419 aa15.23■□□□□ 0.03
MSH6-215ENST00000622629 ATP2B1P20020 1258 aa15.23■□□□□ 0.03
MSH6-215ENST00000622629 ANAPC15P60006 121 aa15.23■□□□□ 0.03
MSH6-215ENST00000622629 CCDC183Q5T5S1 534 aa15.23■□□□□ 0.03
MSH6-215ENST00000622629 LGR6Q9HBX8 967 aa15.23■□□□□ 0.03
MSH6-215ENST00000622629 KRT32Q14532 448 aa15.22■□□□□ 0.03
MSH6-215ENST00000622629 SH2B1Q9NRF2 756 aaPredicted RBP15.22■□□□□ 0.03
MSH6-215ENST00000622629 MAP3K5Q99683 1374 aa15.22■□□□□ 0.03
MSH6-215ENST00000622629 POLR1AO95602 1720 aaPredicted RBP15.22■□□□□ 0.03
MSH6-215ENST00000622629 SPHKAPQ2M3C7 1700 aa15.22■□□□□ 0.03
MSH6-215ENST00000622629 PLEKHG3A1L390 1219 aa15.22■□□□□ 0.03
MSH6-215ENST00000622629 CLCN1P35523 988 aa15.22■□□□□ 0.03
MSH6-215ENST00000622629 CNNM1Q9NRU3 951 aa15.22■□□□□ 0.03
MSH6-215ENST00000622629 STK38Q15208 465 aa15.21■□□□□ 0.03
MSH6-215ENST00000622629 COPS6Q7L5N1 327 aa15.21■□□□□ 0.03
MSH6-215ENST00000622629 RTL1A6NKG5 1358 aa15.21■□□□□ 0.03
MSH6-215ENST00000622629 HCLS1P14317 486 aaPredicted RBP15.21■□□□□ 0.03
MSH6-215ENST00000622629 CKAP2LQ8IYA6 745 aa15.21■□□□□ 0.03
MSH6-215ENST00000622629 STK11IPQ8N1F8 1099 aa15.21■□□□□ 0.03
MSH6-215ENST00000622629 XAGE3Q8WTP9 111 aa15.21■□□□□ 0.03
MSH6-215ENST00000622629 CNPY2Q9Y2B0 182 aa15.21■□□□□ 0.03
MSH6-215ENST00000622629 UQCRHLA0A096LP55 91 aa15.21■□□□□ 0.02
MSH6-215ENST00000622629 GRM8O00222 908 aa15.21■□□□□ 0.02
MSH6-215ENST00000622629 UQCRHP07919 91 aa15.21■□□□□ 0.02
MSH6-215ENST00000622629 NBPF7P0C2Y1 421 aaPredicted RBP15.21■□□□□ 0.02
MSH6-215ENST00000622629 CDK11BP21127 795 aaKnown RBP15.21■□□□□ 0.02
MSH6-215ENST00000622629 USP48Q86UV5 1035 aa15.21■□□□□ 0.02
MSH6-215ENST00000622629 MAP3K11Q16584 847 aa15.2■□□□□ 0.02
MSH6-215ENST00000622629 AKAP4Q5JQC9 854 aa15.2■□□□□ 0.02
MSH6-215ENST00000622629 LRSAM1Q6UWE0 723 aa15.2■□□□□ 0.02
MSH6-215ENST00000622629 KSR2Q6VAB6 950 aa15.2■□□□□ 0.02
MSH6-215ENST00000622629 KIF6Q6ZMV9 814 aa15.2■□□□□ 0.02
MSH6-215ENST00000622629 ZBTB3Q9H5J0 574 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms