RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 KCNQ3O43525 872 aa13□□□□□ -0.33
UPF1-213ENST00000601981 ZNF853P0CG23 659 aa13□□□□□ -0.33
UPF1-213ENST00000601981 SLFN5Q08AF3 891 aa13□□□□□ -0.33
UPF1-213ENST00000601981 ITPK1Q13572 414 aa13□□□□□ -0.33
UPF1-213ENST00000601981 SLC15A2Q16348 729 aa13□□□□□ -0.33
UPF1-213ENST00000601981 RC3H1Q5TC82 1133 aaKnown RBP13□□□□□ -0.33
UPF1-213ENST00000601981 DNAJC10Q8IXB1 793 aa13□□□□□ -0.33
UPF1-213ENST00000601981 TRMT2AQ8IZ69 625 aaKnown RBP13□□□□□ -0.33
UPF1-213ENST00000601981 LINC00116Q8NCU8 138 aa13□□□□□ -0.33
UPF1-213ENST00000601981 FLAD1Q8NFF5 587 aa13□□□□□ -0.33
UPF1-213ENST00000601981 TFCP2L1Q9NZI6 479 aa13□□□□□ -0.33
UPF1-213ENST00000601981 CACNA1FO60840 1977 aa13□□□□□ -0.33
UPF1-213ENST00000601981 SOS1Q07889 1333 aaPredicted RBP12.99□□□□□ -0.33
UPF1-213ENST00000601981 E9PSI1 815 aa12.99□□□□□ -0.33
UPF1-213ENST00000601981 HOXB7P09629 217 aa12.99□□□□□ -0.33
UPF1-213ENST00000601981 DUSP27Q5VZP5 1158 aa12.99□□□□□ -0.33
UPF1-213ENST00000601981 SLC4A9Q96Q91 983 aa12.99□□□□□ -0.33
UPF1-213ENST00000601981 GNPATO15228 680 aa12.98□□□□□ -0.33
UPF1-213ENST00000601981 GIGYF1O75420 1035 aaPredicted RBP12.98□□□□□ -0.33
UPF1-213ENST00000601981 CRKLP46109 303 aaKnown RBP12.98□□□□□ -0.33
UPF1-213ENST00000601981 AKT1S1Q96B36 256 aa12.98□□□□□ -0.33
UPF1-213ENST00000601981 ANO8Q9HCE9 1232 aaPredicted RBP12.98□□□□□ -0.33
UPF1-213ENST00000601981 CCDC87Q9NVE4 849 aa12.98□□□□□ -0.33
UPF1-213ENST00000601981 RCAN3Q9UKA8 241 aa12.98□□□□□ -0.33
UPF1-213ENST00000601981 RTCBQ9Y3I0 505 aaKnown RBP12.98□□□□□ -0.33
UPF1-213ENST00000601981 CYP19A1P11511 503 aaPredicted RBP12.97□□□□□ -0.33
UPF1-213ENST00000601981 SSFA2P28290 1259 aa12.97□□□□□ -0.33
UPF1-213ENST00000601981 ZNF827Q17R98 1081 aa12.97□□□□□ -0.33
UPF1-213ENST00000601981 ERBB4Q15303 1308 aa12.96□□□□□ -0.33
UPF1-213ENST00000601981 FANCIQ9NVI1 1328 aa12.96□□□□□ -0.33
UPF1-213ENST00000601981 ADRA2BP18089 450 aa12.96□□□□□ -0.33
UPF1-213ENST00000601981 R3HDM1Q15032 1099 aaKnown RBP12.96□□□□□ -0.33
UPF1-213ENST00000601981 TSR2Q969E8 191 aaKnown RBP12.96□□□□□ -0.33
UPF1-213ENST00000601981 A0A087WZG4 1122 aa12.95□□□□□ -0.34
UPF1-213ENST00000601981 MSH5O43196 834 aa12.95□□□□□ -0.34
UPF1-213ENST00000601981 RPS6KA4O75676 772 aa12.95□□□□□ -0.34
UPF1-213ENST00000601981 TRAPPC3LQ5T215 181 aa12.95□□□□□ -0.34
UPF1-213ENST00000601981 USP16Q9Y5T5 823 aa12.95□□□□□ -0.34
UPF1-213ENST00000601981 C4AP0C0L4 1744 aa12.95□□□□□ -0.34
UPF1-213ENST00000601981 CASZ1Q86V15 1759 aa12.94□□□□□ -0.34
UPF1-213ENST00000601981 PHF14O94880 888 aa12.94□□□□□ -0.34
UPF1-213ENST00000601981 EIF2S2P20042 333 aaKnown RBP12.94□□□□□ -0.34
UPF1-213ENST00000601981 CANXP27824 592 aaKnown RBP12.94□□□□□ -0.34
UPF1-213ENST00000601981 IL6STP40189 918 aaPredicted RBP12.94□□□□□ -0.34
UPF1-213ENST00000601981 RRP1P56182 461 aaKnown RBP12.94□□□□□ -0.34
UPF1-213ENST00000601981 HDGFL1Q5TGJ6 251 aa12.94□□□□□ -0.34
UPF1-213ENST00000601981 ZBTB1Q9Y2K1 713 aa12.94□□□□□ -0.34
UPF1-213ENST00000601981 ZNF330Q9Y3S2 320 aaPredicted RBP12.94□□□□□ -0.34
UPF1-213ENST00000601981 COL15A1P39059 1388 aa12.94□□□□□ -0.34
UPF1-213ENST00000601981 PNPLA7Q6ZV29 1317 aa12.93□□□□□ -0.34
UPF1-213ENST00000601981 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.93□□□□□ -0.34
UPF1-213ENST00000601981 PRAMEF22A3QJZ6 481 aa12.93□□□□□ -0.34
UPF1-213ENST00000601981 RFC4P35249 363 aa12.93□□□□□ -0.34
UPF1-213ENST00000601981 TWISTNBQ3B726 338 aaPredicted RBP12.93□□□□□ -0.34
UPF1-213ENST00000601981 INTS5Q6P9B9 1019 aaKnown RBP12.93□□□□□ -0.34
UPF1-213ENST00000601981 SLC16A10Q8TF71 515 aa12.93□□□□□ -0.34
UPF1-213ENST00000601981 SPINK5Q9NQ38 1064 aaPredicted RBP12.93□□□□□ -0.34
UPF1-213ENST00000601981 CCDC30Q5VVM6 783 aa12.92□□□□□ -0.34
UPF1-213ENST00000601981 STK31Q9BXU1 1019 aa12.92□□□□□ -0.34
UPF1-213ENST00000601981 ELL2O00472 640 aaPredicted RBP12.91□□□□□ -0.34
UPF1-213ENST00000601981 ZPR1O75312 459 aa12.91□□□□□ -0.34
UPF1-213ENST00000601981 A1BGP04217 495 aa12.91□□□□□ -0.34
UPF1-213ENST00000601981 IRX6P78412 446 aaPredicted RBP12.91□□□□□ -0.34
UPF1-213ENST00000601981 EXOSC9Q06265 439 aaKnown RBP12.91□□□□□ -0.34
UPF1-213ENST00000601981 KRT24Q2M2I5 525 aa12.91□□□□□ -0.34
UPF1-213ENST00000601981 C8orf58Q8NAV2 365 aa12.91□□□□□ -0.34
UPF1-213ENST00000601981 DBF4Q9UBU7 674 aaPredicted RBP12.91□□□□□ -0.34
UPF1-213ENST00000601981 BCORQ6W2J9 1755 aa12.91□□□□□ -0.34
UPF1-213ENST00000601981 SCN7AQ01118 1682 aa12.9□□□□□ -0.34
UPF1-213ENST00000601981 EIF5P55010 431 aaKnown RBP12.9□□□□□ -0.34
UPF1-213ENST00000601981 COL23A1Q86Y22 540 aaPredicted RBP12.9□□□□□ -0.34
UPF1-213ENST00000601981 ARXQ96QS3 562 aa12.9□□□□□ -0.34
UPF1-213ENST00000601981 DDX21Q9NR30 783 aaKnown RBP eCLIP12.9□□□□□ -0.34
UPF1-213ENST00000601981 CT47B1P0C2W7 299 aaPredicted RBP12.89□□□□□ -0.35
UPF1-213ENST00000601981 MYL6BP14649 208 aa12.89□□□□□ -0.35
UPF1-213ENST00000601981 KIF6Q6ZMV9 814 aa12.89□□□□□ -0.35
UPF1-213ENST00000601981 NECTIN2Q92692 538 aa12.89□□□□□ -0.35
UPF1-213ENST00000601981 ARHGEF1Q92888 912 aaKnown RBP12.89□□□□□ -0.35
UPF1-213ENST00000601981 ZNF428Q96B54 188 aa12.89□□□□□ -0.35
UPF1-213ENST00000601981 MTFR1LQ9H019 292 aa12.89□□□□□ -0.35
UPF1-213ENST00000601981 HYPKQ9NX55 129 aa12.89□□□□□ -0.35
UPF1-213ENST00000601981 NUP98P52948 1817 aa12.88□□□□□ -0.35
UPF1-213ENST00000601981 DZIP3Q86Y13 1208 aaKnown RBP12.88□□□□□ -0.35
UPF1-213ENST00000601981 TSPYL6Q8N831 410 aa12.88□□□□□ -0.35
UPF1-213ENST00000601981 PPP4R2Q9NY27 417 aa12.88□□□□□ -0.35
UPF1-213ENST00000601981 CHPF2Q9P2E5 772 aa12.88□□□□□ -0.35
UPF1-213ENST00000601981 NARFQ9UHQ1 456 aa12.88□□□□□ -0.35
UPF1-213ENST00000601981 ZNF652Q9Y2D9 606 aa12.88□□□□□ -0.35
UPF1-213ENST00000601981 USP42Q9H9J4 1324 aaKnown RBP12.88□□□□□ -0.35
UPF1-213ENST00000601981 NBPF26B4DH59 902 aa12.87□□□□□ -0.35
UPF1-213ENST00000601981 POLD1P28340 1107 aa12.87□□□□□ -0.35
UPF1-213ENST00000601981 PIP4K2AP48426 406 aaPredicted RBP12.87□□□□□ -0.35
UPF1-213ENST00000601981 NBPF10Q6P3W6 841 aaKnown RBP12.87□□□□□ -0.35
UPF1-213ENST00000601981 NLGN1Q8N2Q7 840 aa12.87□□□□□ -0.35
UPF1-213ENST00000601981 NBPF15Q8N660 670 aa12.87□□□□□ -0.35
UPF1-213ENST00000601981 SPON1Q9HCB6 807 aa12.87□□□□□ -0.35
UPF1-213ENST00000601981 COL24A1Q17RW2 1714 aa12.87□□□□□ -0.35
UPF1-213ENST00000601981 RGL2O15211 777 aa12.86□□□□□ -0.35
UPF1-213ENST00000601981 VAMP4O75379 141 aa12.86□□□□□ -0.35
UPF1-213ENST00000601981 AMIGO3Q86WK7 504 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms